Wall clock time and date at job start Tue Mar 31 2020 19:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29937 * 125.38140 * 2 1 4 4 C 1.36060 * 108.47858 * 180.16582 * 3 2 1 5 5 C 1.47417 * 126.45121 * 179.82537 * 4 3 2 6 6 O 1.21613 * 120.00326 * 184.26212 * 5 4 3 7 7 N 1.34781 * 119.99652 * 4.25978 * 5 4 3 8 8 C 1.46925 * 120.64100 * 174.92900 * 7 5 4 9 9 C 1.53191 * 108.77564 * 233.65401 * 8 7 5 10 10 C 1.52988 * 109.34971 * 305.42647 * 9 8 7 11 11 C 1.52996 * 109.63600 * 61.20339 * 10 9 8 12 12 C 1.46930 * 120.64291 * 354.90441 * 7 5 4 13 13 C 1.53256 * 109.36050 * 181.13776 * 10 9 8 14 14 N 1.47157 * 108.40508 * 172.10475 * 13 10 9 15 15 C 1.36944 * 120.98872 * 129.52319 * 14 13 10 16 16 H 1.07993 * 120.00126 * 216.87833 * 15 14 13 17 17 C 1.38814 * 119.99654 * 36.87867 * 15 14 13 18 18 N 1.31614 * 120.00401 * 22.10098 * 17 15 14 19 19 Si 1.86805 * 119.99635 * 202.10536 * 17 15 14 20 20 H 1.48499 * 109.47188 * 59.99852 * 19 17 15 21 21 H 1.48504 * 109.46856 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47119 * 299.99810 * 19 17 15 23 23 C 1.47153 * 118.02535 * 309.78897 * 14 13 10 24 24 C 1.52839 * 108.61644 * 50.25620 * 23 14 13 25 25 O 1.42897 * 109.55738 * 300.94156 * 10 9 8 26 26 C 1.36096 * 107.10305 * 359.56605 * 4 3 2 27 27 O 1.34052 * 125.37748 * 179.68477 * 2 1 3 28 28 H 1.09001 * 109.47194 * 180.34648 * 1 2 3 29 29 H 1.08994 * 109.47210 * 300.34486 * 1 2 3 30 30 H 1.09003 * 109.47175 * 60.34518 * 1 2 3 31 31 H 1.08998 * 109.58805 * 113.86549 * 8 7 5 32 32 H 1.09005 * 109.58586 * 353.44208 * 8 7 5 33 33 H 1.09006 * 109.49074 * 185.46421 * 9 8 7 34 34 H 1.09002 * 109.49309 * 65.39138 * 9 8 7 35 35 H 1.08989 * 109.48656 * 58.75839 * 11 10 9 36 36 H 1.08995 * 109.48707 * 178.83605 * 11 10 9 37 37 H 1.08997 * 109.59010 * 246.13456 * 12 7 5 38 38 H 1.08992 * 109.58691 * 6.42183 * 12 7 5 39 39 H 1.08994 * 109.67562 * 52.37950 * 13 10 9 40 40 H 1.09001 * 109.70749 * 291.85029 * 13 10 9 41 41 H 0.97005 * 119.99897 * 6.15902 * 18 17 15 42 42 H 1.09002 * 109.68593 * 170.03657 * 23 14 13 43 43 H 1.09002 * 109.68363 * 290.59762 * 23 14 13 44 44 H 1.09006 * 109.58576 * 187.89444 * 24 23 14 45 45 H 1.09004 * 109.39391 * 67.82466 * 24 23 14 46 46 H 1.08001 * 126.52377 * 180.24211 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5611 0.6638 -0.0037 5 6 4.7439 1.5437 -0.0087 6 8 5.8585 1.0639 -0.0900 7 7 4.5900 2.8800 0.0769 8 6 5.7594 3.7630 0.1848 9 6 5.5854 4.6638 1.4116 10 6 4.2479 5.4002 1.3141 11 6 3.1029 4.3857 1.2916 12 6 3.2497 3.4818 0.0635 13 6 4.0864 6.3229 2.5271 14 7 2.8923 7.1577 2.3201 15 6 1.9296 7.2636 3.2883 16 1 0.8881 7.3254 3.0097 17 6 2.2927 7.2917 4.6278 18 7 3.5113 7.6504 4.9721 19 14 1.0515 6.8201 5.9419 20 1 0.6036 5.4217 5.7207 21 1 1.6826 6.9313 7.2815 22 1 -0.1182 7.7320 5.8680 23 6 2.7605 7.8705 1.0395 24 6 2.9871 6.8755 -0.0983 25 8 4.2182 6.1817 0.1182 26 6 3.5659 -0.6971 0.0038 27 8 2.2831 -1.0930 0.0060 28 1 -0.3634 -1.0277 0.0062 29 1 -0.3633 0.5191 0.8868 30 1 -0.3634 0.5085 -0.8931 31 1 5.8371 4.3777 -0.7119 32 1 6.6618 3.1621 0.2977 33 1 6.3981 5.3893 1.4483 34 1 5.6001 4.0546 2.3153 35 1 3.1371 3.7787 2.1962 36 1 2.1505 4.9134 1.2430 37 1 3.1240 4.0738 -0.8431 38 1 2.4957 2.6954 0.0938 39 1 4.9663 6.9588 2.6242 40 1 3.9641 5.7249 3.4302 41 1 4.1279 7.9805 4.2998 42 1 1.7610 8.2978 0.9583 43 1 3.5054 8.6642 0.9828 44 1 3.0323 7.4098 -1.0474 45 1 2.1652 6.1598 -0.1223 46 1 4.4361 -1.3368 0.0071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949346747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:19 Heat of formation + Delta-G solvation = -16.361739 kcal Electronic energy + Delta-G solvation = -30786.966500 eV Core-core repulsion = 26679.803268 eV Total energy + Delta-G solvation = -4107.163232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.70638 -40.25317 -38.88341 -36.15188 -35.25062 -34.55570 -32.68751 -32.24102 -31.19915 -30.71679 -28.53139 -28.01796 -26.46114 -24.72657 -23.49576 -22.88717 -22.81392 -21.84400 -20.83051 -19.64693 -18.75112 -17.67304 -17.35618 -17.16918 -16.83184 -15.91086 -15.43418 -15.20932 -14.79418 -14.57924 -14.35285 -14.32456 -14.07325 -13.86110 -13.56376 -13.52072 -13.47145 -13.19293 -12.89847 -12.71444 -12.57155 -12.38473 -12.02522 -11.52057 -11.50792 -11.22446 -10.89110 -10.88382 -10.78051 -10.65396 -10.37353 -10.29093 -10.08407 -9.85555 -9.64259 -9.26146 -9.20548 -8.98416 -8.43480 -8.35903 -6.83277 -6.06143 -3.39481 0.91071 1.76509 2.31488 2.98406 3.24021 3.44785 3.47214 3.61545 3.65842 4.28445 4.46449 4.53351 4.54410 4.95837 5.04060 5.04463 5.08914 5.19773 5.33475 5.37104 5.39303 5.41237 5.44764 5.52270 5.62416 5.67500 5.81200 5.81690 5.87911 5.95206 6.09255 6.14353 6.22793 6.30977 6.44268 6.48716 6.63342 6.65954 6.72155 6.80972 6.87483 7.03438 7.22359 7.54050 7.87179 8.01365 8.13262 8.54118 9.04880 9.77024 10.26585 11.15961 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.004024 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.298866 B = 6956.823477 C = 8037.869595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.199 3.801 3 N -0.456 5.456 4 C -0.060 4.060 5 C 0.597 3.403 6 O -0.549 6.549 7 N -0.583 5.583 8 C 0.118 3.882 9 C -0.116 4.116 10 C 0.100 3.900 11 C -0.140 4.140 12 C 0.066 3.934 13 C 0.141 3.859 14 N -0.596 5.596 15 C -0.353 4.353 16 H 0.051 0.949 17 C -0.016 4.016 18 N -0.910 5.910 19 Si 1.064 2.936 20 H -0.292 1.292 21 H -0.285 1.285 22 H -0.291 1.291 23 C 0.111 3.889 24 C 0.046 3.954 25 O -0.380 6.380 26 C 0.008 3.992 27 O -0.196 6.196 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.150 0.850 39 H 0.024 0.976 40 H 0.073 0.927 41 H 0.269 0.731 42 H 0.061 0.939 43 H 0.022 0.978 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 -15.221 -11.775 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.008 4.008 3 N -0.187 5.187 4 C -0.180 4.180 5 C 0.384 3.616 6 O -0.428 6.428 7 N -0.313 5.313 8 C -0.004 4.004 9 C -0.155 4.155 10 C 0.059 3.941 11 C -0.178 4.178 12 C -0.056 4.056 13 C 0.015 3.985 14 N -0.321 5.321 15 C -0.482 4.482 16 H 0.069 0.931 17 C -0.220 4.220 18 N -0.548 5.548 19 Si 0.894 3.106 20 H -0.219 1.219 21 H -0.210 1.210 22 H -0.218 1.218 23 C -0.015 4.015 24 C -0.032 4.032 25 O -0.299 6.299 26 C -0.066 4.066 27 O -0.083 6.083 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.166 0.834 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.039 0.961 44 H 0.097 0.903 45 H 0.065 0.935 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.470 -15.071 -10.275 18.567 hybrid contribution 0.268 -0.035 -1.416 1.442 sum -3.202 -15.105 -11.691 19.368 Atomic orbital electron populations 1.20373 0.80780 1.05016 1.05692 1.26622 0.96788 0.78493 0.98932 1.70357 1.01053 1.28131 1.19143 1.21827 0.91952 0.93028 1.11149 1.16816 0.86056 0.81738 0.77013 1.90787 1.24524 1.75149 1.52366 1.47943 1.09044 1.04682 1.69616 1.21600 0.88063 0.91845 0.98912 1.21862 0.97344 0.98171 0.98127 1.21999 0.93978 0.90765 0.87366 1.22236 1.00624 0.97110 0.97838 1.23021 0.84333 1.00035 0.98254 1.21486 0.89903 0.92071 0.95088 1.44004 1.23032 1.50716 1.14326 1.19841 0.87627 1.53073 0.87694 0.93095 1.26010 1.00757 0.97630 0.97616 1.70764 1.07495 1.39476 1.37062 0.83544 0.74627 0.76215 0.76233 1.21938 1.21030 1.21813 1.21535 0.99458 0.93332 0.87185 1.22926 0.86952 0.94924 0.98369 1.87784 1.36173 1.63755 1.42195 1.25213 0.84755 0.95534 1.01068 1.84393 1.16762 1.37815 1.69293 0.89168 0.87895 0.88105 0.90636 0.89417 0.90073 0.90473 0.91540 0.89362 0.92096 0.83388 0.95789 0.90831 0.91977 0.92023 0.96055 0.90263 0.93463 0.75306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 36.00 0.38 0.04 16 2 C 0.20 1.98 8.30 -13.08 -0.11 1.87 16 3 N -0.46 -5.87 7.67 -7.66 -0.06 -5.92 16 4 C -0.06 -0.82 6.75 -83.02 -0.56 -1.38 16 5 C 0.60 9.55 7.69 -12.52 -0.10 9.45 16 6 O -0.55 -9.67 16.33 5.27 0.09 -9.58 16 7 N -0.58 -9.34 2.97 -174.04 -0.52 -9.86 16 8 C 0.12 1.84 6.19 -3.71 -0.02 1.82 16 9 C -0.12 -1.95 5.10 -26.64 -0.14 -2.09 16 10 C 0.10 1.90 0.68 -90.50 -0.06 1.84 16 11 C -0.14 -2.54 4.33 -26.63 -0.12 -2.65 16 12 C 0.07 1.04 6.10 -3.71 -0.02 1.02 16 13 C 0.14 3.27 3.67 -3.55 -0.01 3.25 16 14 N -0.60 -14.69 2.27 -172.12 -0.39 -15.08 16 15 C -0.35 -9.63 9.45 -15.05 -0.14 -9.77 16 16 H 0.05 1.40 7.92 -52.49 -0.42 0.98 16 17 C -0.02 -0.45 4.76 -17.43 -0.08 -0.54 16 18 N -0.91 -27.08 12.82 55.49 0.71 -26.37 16 19 Si 1.06 24.82 29.97 -169.99 -5.10 19.73 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 23 C 0.11 2.35 6.71 -3.77 -0.03 2.32 16 24 C 0.05 0.83 6.58 37.07 0.24 1.07 16 25 O -0.38 -7.20 9.00 -35.23 -0.32 -7.52 16 26 C 0.01 0.08 11.95 29.96 0.36 0.44 16 27 O -0.20 -1.95 10.73 6.51 0.07 -1.88 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 1.17 7.83 -51.93 -0.41 0.77 16 32 H 0.09 1.34 7.04 -51.93 -0.37 0.97 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.09 1.74 6.15 -51.93 -0.32 1.42 16 37 H 0.06 0.98 7.83 -51.93 -0.41 0.57 16 38 H 0.15 2.26 3.59 -81.17 -0.29 1.97 16 39 H 0.02 0.60 7.73 -51.93 -0.40 0.19 16 40 H 0.07 1.89 7.10 -51.93 -0.37 1.52 16 41 H 0.27 8.17 6.85 -40.82 -0.28 7.89 16 42 H 0.06 1.27 7.96 -51.93 -0.41 0.86 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.05 0.83 6.29 -51.93 -0.33 0.50 16 46 H 0.23 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 361.32 15.07 5.45 5.45 Total: -1.00 -33.48 361.32 -7.07 -40.55 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.60 Total: 3.81 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -0.41 Total: 6.70 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.26 Total: -57.25 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.16 Total: -18.98 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.10 Total: 19.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.48 -7.07 -40.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949346747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.189 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds