Wall clock time and date at job start Tue Mar 31 2020 19:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29937 * 125.38140 * 2 1 4 4 C 1.36060 * 108.47858 * 180.16582 * 3 2 1 5 5 C 1.47417 * 126.45121 * 179.82537 * 4 3 2 6 6 O 1.21613 * 120.00326 * 184.26212 * 5 4 3 7 7 N 1.34781 * 119.99652 * 4.25978 * 5 4 3 8 8 C 1.46925 * 120.64100 * 174.92900 * 7 5 4 9 9 C 1.53191 * 108.77564 * 233.65401 * 8 7 5 10 10 C 1.52988 * 109.34971 * 305.42647 * 9 8 7 11 11 C 1.52996 * 109.63600 * 61.20339 * 10 9 8 12 12 C 1.46930 * 120.64291 * 354.90441 * 7 5 4 13 13 C 1.53256 * 109.36050 * 181.13776 * 10 9 8 14 14 N 1.47157 * 108.40508 * 172.10475 * 13 10 9 15 15 C 1.36944 * 120.98872 * 129.52319 * 14 13 10 16 16 H 1.07993 * 120.00126 * 216.87833 * 15 14 13 17 17 C 1.38814 * 119.99654 * 36.87867 * 15 14 13 18 18 N 1.31614 * 120.00401 * 22.10098 * 17 15 14 19 19 Si 1.86805 * 119.99635 * 202.10536 * 17 15 14 20 20 H 1.48499 * 109.47188 * 59.99852 * 19 17 15 21 21 H 1.48504 * 109.46856 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47119 * 299.99810 * 19 17 15 23 23 C 1.47153 * 118.02535 * 309.78897 * 14 13 10 24 24 C 1.52839 * 108.61644 * 50.25620 * 23 14 13 25 25 O 1.42897 * 109.55738 * 300.94156 * 10 9 8 26 26 C 1.36096 * 107.10305 * 359.56605 * 4 3 2 27 27 O 1.34052 * 125.37748 * 179.68477 * 2 1 3 28 28 H 1.09001 * 109.47194 * 180.34648 * 1 2 3 29 29 H 1.08994 * 109.47210 * 300.34486 * 1 2 3 30 30 H 1.09003 * 109.47175 * 60.34518 * 1 2 3 31 31 H 1.08998 * 109.58805 * 113.86549 * 8 7 5 32 32 H 1.09005 * 109.58586 * 353.44208 * 8 7 5 33 33 H 1.09006 * 109.49074 * 185.46421 * 9 8 7 34 34 H 1.09002 * 109.49309 * 65.39138 * 9 8 7 35 35 H 1.08989 * 109.48656 * 58.75839 * 11 10 9 36 36 H 1.08995 * 109.48707 * 178.83605 * 11 10 9 37 37 H 1.08997 * 109.59010 * 246.13456 * 12 7 5 38 38 H 1.08992 * 109.58691 * 6.42183 * 12 7 5 39 39 H 1.08994 * 109.67562 * 52.37950 * 13 10 9 40 40 H 1.09001 * 109.70749 * 291.85029 * 13 10 9 41 41 H 0.97005 * 119.99897 * 6.15902 * 18 17 15 42 42 H 1.09002 * 109.68593 * 170.03657 * 23 14 13 43 43 H 1.09002 * 109.68363 * 290.59762 * 23 14 13 44 44 H 1.09006 * 109.58576 * 187.89444 * 24 23 14 45 45 H 1.09004 * 109.39391 * 67.82466 * 24 23 14 46 46 H 1.08001 * 126.52377 * 180.24211 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5611 0.6638 -0.0037 5 6 4.7439 1.5437 -0.0087 6 8 5.8585 1.0639 -0.0900 7 7 4.5900 2.8800 0.0769 8 6 5.7594 3.7630 0.1848 9 6 5.5854 4.6638 1.4116 10 6 4.2479 5.4002 1.3141 11 6 3.1029 4.3857 1.2916 12 6 3.2497 3.4818 0.0635 13 6 4.0864 6.3229 2.5271 14 7 2.8923 7.1577 2.3201 15 6 1.9296 7.2636 3.2883 16 1 0.8881 7.3254 3.0097 17 6 2.2927 7.2917 4.6278 18 7 3.5113 7.6504 4.9721 19 14 1.0515 6.8201 5.9419 20 1 0.6036 5.4217 5.7207 21 1 1.6826 6.9313 7.2815 22 1 -0.1182 7.7320 5.8680 23 6 2.7605 7.8705 1.0395 24 6 2.9871 6.8755 -0.0983 25 8 4.2182 6.1817 0.1182 26 6 3.5659 -0.6971 0.0038 27 8 2.2831 -1.0930 0.0060 28 1 -0.3634 -1.0277 0.0062 29 1 -0.3633 0.5191 0.8868 30 1 -0.3634 0.5085 -0.8931 31 1 5.8371 4.3777 -0.7119 32 1 6.6618 3.1621 0.2977 33 1 6.3981 5.3893 1.4483 34 1 5.6001 4.0546 2.3153 35 1 3.1371 3.7787 2.1962 36 1 2.1505 4.9134 1.2430 37 1 3.1240 4.0738 -0.8431 38 1 2.4957 2.6954 0.0938 39 1 4.9663 6.9588 2.6242 40 1 3.9641 5.7249 3.4302 41 1 4.1279 7.9805 4.2998 42 1 1.7610 8.2978 0.9583 43 1 3.5054 8.6642 0.9828 44 1 3.0323 7.4098 -1.0474 45 1 2.1652 6.1598 -0.1223 46 1 4.4361 -1.3368 0.0071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949346747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:18 Heat of formation + Delta-G solvation = -39.505013 kcal Electronic energy + Delta-G solvation = -30787.970068 eV Core-core repulsion = 26679.803268 eV Total energy + Delta-G solvation = -4108.166800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.53360 -41.66291 -40.30044 -37.59857 -36.44380 -36.10136 -33.93583 -33.18408 -33.14034 -32.09290 -30.01990 -28.85902 -28.22970 -26.02982 -25.13592 -24.39173 -24.17111 -22.82011 -22.23295 -20.93768 -20.20524 -19.37894 -18.79885 -17.99280 -17.81946 -17.08193 -17.03159 -16.72184 -16.17542 -16.13438 -15.93831 -15.66618 -15.40138 -15.29373 -14.96167 -14.66122 -14.55796 -14.46330 -13.99432 -13.90424 -13.86417 -13.59630 -13.26654 -13.02693 -12.93535 -12.63366 -12.49799 -12.41006 -12.32566 -12.22908 -11.99864 -11.88543 -11.72084 -11.54270 -11.06671 -10.90131 -10.57531 -10.36217 -10.12800 -9.69280 -8.91292 -8.20943 -5.57057 0.03228 0.87931 1.55260 1.55986 1.62629 1.81252 1.85019 2.13080 2.58924 2.77232 2.79778 3.16203 3.40072 3.46577 3.73788 3.77149 3.85029 3.92251 4.05466 4.23340 4.28523 4.32934 4.37203 4.41376 4.44297 4.51925 4.55632 4.64206 4.68371 4.68903 4.72924 4.75084 4.82775 4.86546 4.87151 4.96625 5.04516 5.10998 5.21058 5.21556 5.34750 5.68811 5.84566 6.20952 6.30595 6.33710 6.46664 6.93258 6.98531 7.67823 8.18295 8.94169 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.004024 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.298866 B = 6956.823477 C = 8037.869595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.209 3.791 3 N -0.488 5.488 4 C -0.099 4.099 5 C 0.595 3.405 6 O -0.571 6.571 7 N -0.589 5.589 8 C 0.125 3.875 9 C -0.113 4.113 10 C 0.110 3.890 11 C -0.128 4.128 12 C 0.078 3.922 13 C 0.151 3.849 14 N -0.612 5.612 15 C -0.355 4.355 16 H 0.051 0.949 17 C -0.068 4.068 18 N -0.939 5.939 19 Si 1.113 2.887 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.271 1.271 23 C 0.106 3.894 24 C 0.053 3.947 25 O -0.380 6.380 26 C 0.032 3.968 27 O -0.191 6.191 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.162 0.838 39 H -0.001 1.001 40 H 0.040 0.960 41 H 0.251 0.749 42 H 0.066 0.934 43 H 0.011 0.989 44 H 0.116 0.884 45 H 0.055 0.945 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 -17.194 -13.273 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.001 3.999 3 N -0.218 5.218 4 C -0.217 4.217 5 C 0.384 3.616 6 O -0.452 6.452 7 N -0.319 5.319 8 C 0.003 3.997 9 C -0.151 4.151 10 C 0.069 3.931 11 C -0.166 4.166 12 C -0.044 4.044 13 C 0.025 3.975 14 N -0.338 5.338 15 C -0.485 4.485 16 H 0.068 0.932 17 C -0.265 4.265 18 N -0.579 5.579 19 Si 0.936 3.064 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.197 1.197 23 C -0.019 4.019 24 C -0.024 4.024 25 O -0.299 6.299 26 C -0.042 4.042 27 O -0.077 6.077 28 H 0.134 0.866 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.178 0.822 39 H 0.017 0.983 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.029 0.971 44 H 0.134 0.866 45 H 0.073 0.927 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -5.230 -17.036 -11.819 21.383 hybrid contribution 0.762 0.584 -0.989 1.378 sum -4.467 -16.452 -12.808 21.323 Atomic orbital electron populations 1.20667 0.77685 1.07004 1.06521 1.27442 0.98090 0.77724 0.96608 1.70124 1.01033 1.29648 1.21036 1.21636 0.91703 0.93848 1.14503 1.17122 0.86645 0.81714 0.76106 1.90760 1.25599 1.75433 1.53412 1.47998 1.08941 1.05061 1.69931 1.21517 0.88396 0.91651 0.98120 1.21824 0.96221 0.98303 0.98771 1.21812 0.95679 0.90125 0.85511 1.22077 0.99270 0.96785 0.98482 1.22958 0.84860 0.99865 0.96680 1.21299 0.88497 0.91789 0.95881 1.44226 1.22765 1.51688 1.15087 1.20103 0.88214 1.51694 0.88476 0.93173 1.27382 1.01530 0.97441 1.00151 1.70901 1.08463 1.42089 1.36439 0.82909 0.73131 0.77063 0.73249 1.20267 1.21969 1.19667 1.21704 0.99453 0.93926 0.86837 1.22969 0.86795 0.94309 0.98332 1.87797 1.36908 1.63706 1.41463 1.25694 0.85649 0.94782 0.98108 1.84450 1.16500 1.37719 1.69078 0.86639 0.87404 0.86688 0.90120 0.88928 0.89554 0.91060 0.93177 0.90833 0.91870 0.82221 0.98291 0.94105 0.93899 0.91518 0.97085 0.86572 0.92719 0.72693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 71.24 0.75 0.27 16 2 C 0.21 3.64 8.30 88.39 0.73 4.37 16 3 N -0.49 -11.74 7.67 -293.04 -2.25 -13.98 16 4 C -0.10 -2.56 6.75 40.41 0.27 -2.29 16 5 C 0.60 18.56 7.69 86.66 0.67 19.23 16 6 O -0.57 -19.67 16.33 -4.07 -0.07 -19.74 16 7 N -0.59 -18.48 2.97 -822.77 -2.44 -20.93 16 8 C 0.13 3.84 6.19 86.36 0.53 4.37 16 9 C -0.11 -3.82 5.10 30.65 0.16 -3.66 16 10 C 0.11 4.22 0.68 -10.71 -0.01 4.21 16 11 C -0.13 -4.65 4.33 30.66 0.13 -4.51 16 12 C 0.08 2.41 6.10 86.36 0.53 2.94 16 13 C 0.15 7.33 3.67 86.34 0.32 7.64 16 14 N -0.61 -30.88 2.27 -698.48 -1.59 -32.46 16 15 C -0.36 -19.67 9.45 84.03 0.79 -18.88 16 16 H 0.05 2.75 7.92 -2.91 -0.02 2.73 16 17 C -0.07 -3.83 4.76 84.86 0.40 -3.43 16 18 N -0.94 -57.89 12.82 21.65 0.28 -57.61 16 19 Si 1.11 50.38 29.97 68.60 2.06 52.44 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 C 0.11 4.47 6.71 86.20 0.58 5.05 16 24 C 0.05 1.82 6.58 71.93 0.47 2.30 16 25 O -0.38 -14.01 9.00 -148.98 -1.34 -15.36 16 26 C 0.03 0.60 11.95 67.32 0.80 1.41 16 27 O -0.19 -3.27 10.73 0.39 0.00 -3.26 16 28 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 2.40 7.83 -2.39 -0.02 2.38 16 32 H 0.09 2.77 7.04 -2.38 -0.02 2.75 16 33 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.89 6.15 -2.39 -0.01 2.88 16 37 H 0.06 1.92 7.83 -2.39 -0.02 1.90 16 38 H 0.16 4.70 3.59 -60.12 -0.22 4.49 16 39 H 0.00 -0.04 7.73 -2.39 -0.02 -0.06 16 40 H 0.04 2.21 7.10 -2.39 -0.02 2.19 16 41 H 0.25 16.02 6.85 -92.70 -0.64 15.38 16 42 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 43 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.12 3.17 8.14 -2.38 -0.02 3.15 16 45 H 0.05 1.82 6.29 -2.39 -0.02 1.80 16 46 H 0.26 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -74.40 361.32 2.72 -71.68 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.93 Total: 20.22 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 7.14 Total: 19.02 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -6.00 Total: -124.99 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -1.40 Total: -38.36 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.06 Total: 52.44 kcal Total: -74.40 2.72 -71.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949346747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.177 kcal (2) G-P(sol) polarization free energy of solvation -74.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds