Wall clock time and date at job start Tue Mar 31 2020 20:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.46836 * 2 1 4 4 C 1.38025 * 119.51426 * 125.02528 * 3 2 1 5 5 C 1.39922 * 119.13328 * 179.97438 * 4 3 2 6 6 C 1.48166 * 120.89058 * 179.97438 * 5 4 3 7 7 O 1.21507 * 119.99849 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99829 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99777 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46777 * 180.02562 * 9 8 6 11 11 H 1.09005 * 110.88515 * 302.56916 * 10 9 8 12 12 C 1.54905 * 111.00871 * 66.45444 * 10 9 8 13 13 N 1.47420 * 104.83405 * 155.07915 * 12 10 9 14 14 C 1.36941 * 125.64745 * 155.83694 * 13 12 10 15 15 H 1.07996 * 120.00026 * 0.02562 * 14 13 12 16 16 C 1.38809 * 119.99891 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00209 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99909 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46820 * 90.00143 * 18 16 14 20 20 H 1.48500 * 109.46987 * 209.99965 * 18 16 14 21 21 H 1.48496 * 109.47415 * 330.00272 * 18 16 14 22 22 C 1.47020 * 108.70254 * 335.87493 * 13 12 10 23 23 C 1.54320 * 107.27447 * 1.05458 * 22 13 12 24 24 H 1.08993 * 110.72412 * 263.83447 * 23 22 13 25 25 O 1.42899 * 110.71882 * 140.55441 * 23 22 13 26 26 C 1.39609 * 118.21760 * 359.74677 * 5 4 3 27 27 C 1.38851 * 118.94745 * 0.47014 * 26 5 4 28 28 O 1.35686 * 119.62199 * 179.79785 * 27 26 5 29 29 N 1.31874 * 119.51693 * 304.99541 * 3 2 1 30 30 H 1.08998 * 109.46868 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47222 * 300.00322 * 1 2 3 32 32 H 1.08996 * 109.46896 * 60.00252 * 1 2 3 33 33 H 1.08992 * 109.46884 * 239.99861 * 2 1 3 34 34 H 1.08996 * 109.46896 * 119.99748 * 2 1 3 35 35 H 1.08005 * 120.43034 * 0.02562 * 4 3 2 36 36 H 0.97001 * 120.00142 * 0.02562 * 8 6 5 37 37 H 1.09003 * 109.47197 * 300.00315 * 9 8 6 38 38 H 1.08992 * 109.46739 * 60.00461 * 9 8 6 39 39 H 1.09000 * 110.36478 * 273.92563 * 12 10 9 40 40 H 1.09008 * 110.36195 * 36.13209 * 12 10 9 41 41 H 0.96999 * 120.00452 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.88414 * 120.47460 * 22 13 12 43 43 H 1.09005 * 109.87706 * 241.48337 * 22 13 12 44 44 H 0.96698 * 113.99660 * 66.48854 * 25 23 22 45 45 H 1.08000 * 120.52807 * 180.24760 * 26 5 4 46 46 H 0.96700 * 114.00082 * 269.72762 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9089 1.8321 0.9836 5 6 3.3706 3.1530 0.9757 6 6 4.3118 3.6360 2.0130 7 8 4.6926 2.8819 2.8864 8 7 4.7455 4.9119 1.9879 9 6 5.6757 5.3896 3.0140 10 6 6.0062 6.8613 2.7572 11 1 6.4259 6.9971 1.7604 12 6 4.7571 7.7546 2.9602 13 7 5.2954 9.0865 3.2913 14 6 4.6469 10.2782 3.1053 15 1 3.6531 10.2920 2.6827 16 6 5.2669 11.4684 3.4598 17 7 6.4782 11.4517 3.9743 18 14 4.3826 13.0941 3.2055 19 1 3.6001 13.4277 4.4228 20 1 5.3790 14.1648 2.9487 21 1 3.4655 12.9822 2.0428 22 6 6.6441 8.9235 3.8534 23 6 6.9647 7.4140 3.8450 24 1 6.7453 6.9678 4.8149 25 8 8.3277 7.1886 3.4798 26 6 2.9245 4.0021 -0.0387 27 6 2.0386 3.5086 -0.9872 28 8 1.5930 4.3231 -1.9766 29 7 1.6284 2.2527 -0.9401 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.2348 1.1432 1.7489 36 1 4.4412 5.5139 1.2909 37 1 5.2163 5.2869 3.9971 38 1 6.5913 4.7995 2.9773 39 1 4.1700 7.7999 2.0430 40 1 4.1485 7.3748 3.7810 41 1 6.9116 12.2835 4.2218 42 1 7.3685 9.4597 3.2404 43 1 6.6686 9.3044 4.8744 44 1 8.9675 7.5157 4.1269 45 1 3.2602 5.0277 -0.0829 46 1 0.7814 4.8008 -1.7572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958267368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:50 Heat of formation + Delta-G solvation = -67.505442 kcal Electronic energy + Delta-G solvation = -28421.989660 eV Core-core repulsion = 24312.608670 eV Total energy + Delta-G solvation = -4109.380990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15201 -39.61099 -38.29071 -37.57431 -35.29335 -34.81549 -34.30583 -32.67989 -32.14842 -30.03065 -29.53680 -27.68376 -26.03118 -25.20235 -24.20624 -23.16451 -22.51429 -20.77370 -20.27434 -19.92998 -18.97878 -17.53513 -17.33216 -16.95625 -16.66903 -16.08451 -15.85623 -15.61919 -15.42860 -14.92286 -14.64717 -14.60029 -14.31332 -14.05001 -13.78467 -13.43465 -13.21462 -12.77437 -12.70784 -12.51514 -12.27639 -12.15481 -12.06000 -11.81888 -11.54915 -11.41411 -11.29738 -11.06574 -10.86688 -10.66988 -10.50063 -10.21444 -10.11287 -9.94338 -9.88666 -9.72667 -9.28819 -9.19561 -9.13500 -8.71834 -6.97066 -5.81723 -3.16665 0.34958 0.59153 2.58466 2.88367 3.14638 3.33851 3.38788 3.40960 3.44624 4.03712 4.25988 4.38906 4.57717 4.59324 4.66610 4.77647 4.85032 4.94962 4.95846 5.08275 5.12434 5.34100 5.35230 5.40816 5.43169 5.53880 5.59383 5.63801 5.74932 5.78017 5.90186 5.92019 5.95652 6.06828 6.11742 6.23590 6.29358 6.43556 6.72804 7.10692 7.31042 7.32812 7.42979 7.51688 7.68649 7.96912 8.12579 8.13878 9.09468 9.70071 10.33802 11.29833 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014631 B = 0.002487 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.245502 B =11257.685513 C =12664.454496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C 0.151 3.849 4 C -0.125 4.125 5 C -0.064 4.064 6 C 0.556 3.444 7 O -0.530 6.530 8 N -0.713 5.713 9 C 0.133 3.867 10 C -0.109 4.109 11 H 0.091 0.909 12 C 0.141 3.859 13 N -0.602 5.602 14 C -0.232 4.232 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.151 3.849 23 C 0.083 3.917 24 H 0.057 0.943 25 O -0.566 6.566 26 C -0.161 4.161 27 C 0.315 3.685 28 O -0.478 6.478 29 N -0.487 5.487 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.152 0.848 36 H 0.403 0.597 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.024 0.976 41 H 0.254 0.746 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.377 0.623 45 H 0.147 0.853 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.790 -19.337 -6.247 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C 0.013 3.987 4 C -0.146 4.146 5 C -0.075 4.075 6 C 0.342 3.658 7 O -0.407 6.407 8 N -0.364 5.364 9 C 0.010 3.990 10 C -0.129 4.129 11 H 0.109 0.891 12 C 0.015 3.985 13 N -0.329 5.329 14 C -0.360 4.360 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.569 5.569 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.026 3.974 23 C 0.023 3.977 24 H 0.075 0.925 25 O -0.371 6.371 26 C -0.182 4.182 27 C 0.136 3.864 28 O -0.286 6.286 29 N -0.207 5.207 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.170 0.830 36 H 0.238 0.762 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.041 0.959 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.224 0.776 45 H 0.165 0.835 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -7.808 -20.302 -7.048 22.865 hybrid contribution -0.112 2.209 0.814 2.356 sum -7.920 -18.093 -6.234 20.711 Atomic orbital electron populations 1.21684 0.93843 1.01962 1.02737 1.20549 0.97264 0.89658 1.03698 1.21004 0.92711 0.95906 0.89045 1.22137 0.96859 0.95521 1.00070 1.20318 0.97322 0.94581 0.95302 1.18063 0.80869 0.82323 0.84578 1.90783 1.57694 1.55325 1.36880 1.45967 1.47438 1.11390 1.31603 1.21462 0.92511 0.94295 0.90781 1.22630 0.97458 0.92097 1.00730 0.89118 1.21604 0.92896 0.86256 0.97766 1.44298 1.14571 1.00356 1.73677 1.19052 0.98487 0.82372 1.36093 0.90250 1.24825 0.96712 0.97874 1.00934 1.69933 1.13272 1.25799 1.47895 0.86088 0.78360 0.83284 0.77822 1.21523 1.21595 1.20621 1.21837 0.87836 0.88559 0.99174 1.23109 0.80987 0.98250 0.95314 0.92468 1.86421 1.15984 1.83800 1.50920 1.22343 1.00230 1.01663 0.94010 1.18932 0.93227 0.87239 0.87007 1.84810 1.46941 1.58061 1.38758 1.66768 1.25786 1.03987 1.24122 0.92102 0.92758 0.91553 0.89587 0.89710 0.83023 0.76155 0.90985 0.90773 0.94039 0.95883 0.93613 0.92365 0.93554 0.77634 0.83497 0.73844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.77 37.16 0.36 -0.58 16 2 C -0.07 -0.51 6.33 -27.88 -0.18 -0.69 16 3 C 0.15 1.47 6.17 -82.65 -0.51 0.96 16 4 C -0.13 -1.29 9.27 -39.03 -0.36 -1.65 16 5 C -0.06 -0.72 5.91 -104.68 -0.62 -1.34 16 6 C 0.56 7.40 7.80 -12.18 -0.09 7.30 16 7 O -0.53 -8.62 16.44 5.36 0.09 -8.53 16 8 N -0.71 -8.90 5.37 -61.15 -0.33 -9.22 16 9 C 0.13 1.88 5.12 -4.04 -0.02 1.86 16 10 C -0.11 -1.80 2.83 -88.47 -0.25 -2.05 16 11 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 12 C 0.14 2.67 6.41 -2.53 -0.02 2.65 16 13 N -0.60 -14.65 3.39 -170.08 -0.58 -15.23 16 14 C -0.23 -6.23 10.28 -15.06 -0.15 -6.38 16 15 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 16 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 17 N -0.92 -26.31 10.31 55.49 0.57 -25.74 16 18 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.15 3.50 5.15 -3.07 -0.02 3.48 16 23 C 0.08 1.50 3.80 -24.90 -0.09 1.40 16 24 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 25 O -0.57 -9.51 13.39 -35.23 -0.47 -9.99 16 26 C -0.16 -1.60 9.55 -38.84 -0.37 -1.97 16 27 C 0.32 3.30 7.74 -17.17 -0.13 3.17 16 28 O -0.48 -4.36 13.56 -18.76 -0.25 -4.61 16 29 N -0.49 -5.34 9.87 -9.60 -0.09 -5.43 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.50 7.94 -51.93 -0.41 0.09 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.45 7.86 -51.93 -0.41 0.04 16 35 H 0.15 1.43 7.62 -52.48 -0.40 1.03 16 36 H 0.40 4.31 6.48 -40.82 -0.26 4.04 16 37 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.02 0.44 8.00 -51.92 -0.42 0.02 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.06 1.53 7.29 -51.93 -0.38 1.15 16 43 H 0.05 1.18 7.50 -51.93 -0.39 0.79 16 44 H 0.38 4.88 9.12 45.56 0.42 5.30 16 45 H 0.15 1.21 6.53 -52.49 -0.34 0.87 16 46 H 0.40 1.71 9.06 45.56 0.41 2.12 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -34.52 383.34 -7.97 -42.48 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.10 Total: 8.12 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -2.55 Total: 5.87 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.43 Total: -55.63 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.64 Total: -23.12 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.52 -7.97 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958267368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.022 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds