Wall clock time and date at job start Tue Mar 31 2020 20:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.46836 * 2 1 4 4 C 1.38025 * 119.51426 * 125.02528 * 3 2 1 5 5 C 1.39922 * 119.13328 * 179.97438 * 4 3 2 6 6 C 1.48166 * 120.89058 * 179.97438 * 5 4 3 7 7 O 1.21507 * 119.99849 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99829 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99777 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46777 * 180.02562 * 9 8 6 11 11 H 1.09005 * 110.88515 * 302.56916 * 10 9 8 12 12 C 1.54905 * 111.00871 * 66.45444 * 10 9 8 13 13 N 1.47420 * 104.83405 * 155.07915 * 12 10 9 14 14 C 1.36941 * 125.64745 * 155.83694 * 13 12 10 15 15 H 1.07996 * 120.00026 * 0.02562 * 14 13 12 16 16 C 1.38809 * 119.99891 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00209 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99909 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46820 * 90.00143 * 18 16 14 20 20 H 1.48500 * 109.46987 * 209.99965 * 18 16 14 21 21 H 1.48496 * 109.47415 * 330.00272 * 18 16 14 22 22 C 1.47020 * 108.70254 * 335.87493 * 13 12 10 23 23 C 1.54320 * 107.27447 * 1.05458 * 22 13 12 24 24 H 1.08993 * 110.72412 * 263.83447 * 23 22 13 25 25 O 1.42899 * 110.71882 * 140.55441 * 23 22 13 26 26 C 1.39609 * 118.21760 * 359.74677 * 5 4 3 27 27 C 1.38851 * 118.94745 * 0.47014 * 26 5 4 28 28 O 1.35686 * 119.62199 * 179.79785 * 27 26 5 29 29 N 1.31874 * 119.51693 * 304.99541 * 3 2 1 30 30 H 1.08998 * 109.46868 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47222 * 300.00322 * 1 2 3 32 32 H 1.08996 * 109.46896 * 60.00252 * 1 2 3 33 33 H 1.08992 * 109.46884 * 239.99861 * 2 1 3 34 34 H 1.08996 * 109.46896 * 119.99748 * 2 1 3 35 35 H 1.08005 * 120.43034 * 0.02562 * 4 3 2 36 36 H 0.97001 * 120.00142 * 0.02562 * 8 6 5 37 37 H 1.09003 * 109.47197 * 300.00315 * 9 8 6 38 38 H 1.08992 * 109.46739 * 60.00461 * 9 8 6 39 39 H 1.09000 * 110.36478 * 273.92563 * 12 10 9 40 40 H 1.09008 * 110.36195 * 36.13209 * 12 10 9 41 41 H 0.96999 * 120.00452 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.88414 * 120.47460 * 22 13 12 43 43 H 1.09005 * 109.87706 * 241.48337 * 22 13 12 44 44 H 0.96698 * 113.99660 * 66.48854 * 25 23 22 45 45 H 1.08000 * 120.52807 * 180.24760 * 26 5 4 46 46 H 0.96700 * 114.00082 * 269.72762 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9089 1.8321 0.9836 5 6 3.3706 3.1530 0.9757 6 6 4.3118 3.6360 2.0130 7 8 4.6926 2.8819 2.8864 8 7 4.7455 4.9119 1.9879 9 6 5.6757 5.3896 3.0140 10 6 6.0062 6.8613 2.7572 11 1 6.4259 6.9971 1.7604 12 6 4.7571 7.7546 2.9602 13 7 5.2954 9.0865 3.2913 14 6 4.6469 10.2782 3.1053 15 1 3.6531 10.2920 2.6827 16 6 5.2669 11.4684 3.4598 17 7 6.4782 11.4517 3.9743 18 14 4.3826 13.0941 3.2055 19 1 3.6001 13.4277 4.4228 20 1 5.3790 14.1648 2.9487 21 1 3.4655 12.9822 2.0428 22 6 6.6441 8.9235 3.8534 23 6 6.9647 7.4140 3.8450 24 1 6.7453 6.9678 4.8149 25 8 8.3277 7.1886 3.4798 26 6 2.9245 4.0021 -0.0387 27 6 2.0386 3.5086 -0.9872 28 8 1.5930 4.3231 -1.9766 29 7 1.6284 2.2527 -0.9401 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.2348 1.1432 1.7489 36 1 4.4412 5.5139 1.2909 37 1 5.2163 5.2869 3.9971 38 1 6.5913 4.7995 2.9773 39 1 4.1700 7.7999 2.0430 40 1 4.1485 7.3748 3.7810 41 1 6.9116 12.2835 4.2218 42 1 7.3685 9.4597 3.2404 43 1 6.6686 9.3044 4.8744 44 1 8.9675 7.5157 4.1269 45 1 3.2602 5.0277 -0.0829 46 1 0.7814 4.8008 -1.7572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958267368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:49 Heat of formation + Delta-G solvation = -97.190102 kcal Electronic energy + Delta-G solvation = -28423.276884 eV Core-core repulsion = 24312.608670 eV Total energy + Delta-G solvation = -4110.668213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97216 -40.67654 -39.73473 -38.28287 -36.66667 -36.22675 -35.06189 -34.02240 -33.28927 -31.45523 -30.41288 -29.33253 -27.46287 -26.29744 -25.33111 -24.23658 -23.32875 -22.25239 -21.63025 -21.10809 -19.83910 -18.91634 -18.45760 -18.21646 -17.89226 -17.08698 -16.80867 -16.78918 -16.48535 -16.38611 -15.77504 -15.67133 -15.28886 -15.22024 -14.83489 -14.73902 -14.41089 -14.08230 -14.01057 -13.69846 -13.49333 -13.21066 -13.10957 -12.90551 -12.76638 -12.72493 -12.47710 -12.37205 -12.30921 -11.93469 -11.93074 -11.80303 -11.63485 -11.34783 -11.05006 -10.84374 -10.73889 -10.53791 -10.22749 -9.91925 -8.94383 -7.87134 -5.23573 -0.48381 -0.14214 1.46558 1.47808 1.56360 1.66298 1.86965 2.42754 2.47393 2.65832 3.21060 3.31055 3.34144 3.44487 3.54440 3.71686 3.83657 3.86184 3.88624 4.13369 4.14869 4.24627 4.39068 4.41052 4.42480 4.46119 4.59253 4.67632 4.72620 4.79830 4.85297 4.92197 4.93799 5.08375 5.17624 5.20552 5.30808 5.33134 5.41731 5.47416 5.48207 5.71001 6.15856 6.31337 6.54531 6.80973 6.88241 6.96019 7.06386 7.73406 8.36366 9.22982 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014631 B = 0.002487 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.245502 B =11257.685513 C =12664.454496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 C 0.150 3.850 4 C -0.129 4.129 5 C -0.075 4.075 6 C 0.560 3.440 7 O -0.562 6.562 8 N -0.706 5.706 9 C 0.146 3.854 10 C -0.091 4.091 11 H 0.087 0.913 12 C 0.139 3.861 13 N -0.625 5.625 14 C -0.241 4.241 15 H 0.088 0.912 16 C -0.068 4.068 17 N -0.952 5.952 18 Si 0.978 3.022 19 H -0.287 1.287 20 H -0.297 1.297 21 H -0.266 1.266 22 C 0.160 3.840 23 C 0.097 3.903 24 H 0.077 0.923 25 O -0.570 6.570 26 C -0.158 4.158 27 C 0.310 3.690 28 O -0.487 6.487 29 N -0.502 5.502 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.158 0.842 36 H 0.413 0.587 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.032 0.968 41 H 0.247 0.753 42 H 0.019 0.981 43 H 0.013 0.987 44 H 0.393 0.607 45 H 0.163 0.837 46 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 -20.731 -7.068 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C 0.012 3.988 4 C -0.150 4.150 5 C -0.085 4.085 6 C 0.347 3.653 7 O -0.442 6.442 8 N -0.357 5.357 9 C 0.022 3.978 10 C -0.111 4.111 11 H 0.105 0.895 12 C 0.014 3.986 13 N -0.352 5.352 14 C -0.370 4.370 15 H 0.106 0.894 16 C -0.261 4.261 17 N -0.601 5.601 18 Si 0.807 3.193 19 H -0.214 1.214 20 H -0.224 1.224 21 H -0.191 1.191 22 C 0.034 3.966 23 C 0.037 3.963 24 H 0.095 0.905 25 O -0.377 6.377 26 C -0.179 4.179 27 C 0.131 3.869 28 O -0.297 6.297 29 N -0.223 5.223 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.176 0.824 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.031 0.969 44 H 0.243 0.757 45 H 0.181 0.819 46 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -9.111 -21.704 -7.893 24.827 hybrid contribution 0.253 2.615 1.036 2.824 sum -8.858 -19.089 -6.857 22.133 Atomic orbital electron populations 1.21653 0.93553 1.02826 1.01831 1.20678 0.97435 0.88175 1.04925 1.21410 0.92161 0.96876 0.88358 1.22280 0.96915 0.95378 1.00402 1.20193 0.97682 0.95292 0.95381 1.18289 0.80606 0.81990 0.84433 1.90766 1.58982 1.56123 1.38284 1.45842 1.46952 1.11498 1.31439 1.21207 0.92959 0.92361 0.91250 1.22431 0.95684 0.93039 0.99961 0.89485 1.21793 0.94062 0.84190 0.98599 1.44605 1.15108 1.01722 1.73768 1.19485 0.98901 0.83588 1.34988 0.89380 1.25667 0.97601 1.01222 1.01564 1.70155 1.14705 1.25891 1.49340 0.85080 0.77188 0.79051 0.78027 1.21368 1.22383 1.19078 1.21602 0.86892 0.91842 0.96247 1.22887 0.81967 0.94524 0.96960 0.90504 1.86390 1.15745 1.83563 1.51986 1.22436 0.99827 1.02213 0.93446 1.19076 0.93314 0.87375 0.87162 1.84765 1.48285 1.58102 1.38588 1.66843 1.26280 1.04439 1.24718 0.90371 0.93187 0.92882 0.88927 0.87880 0.82435 0.74987 0.90921 0.90726 0.92358 0.95035 0.94420 0.96304 0.96887 0.75711 0.81922 0.71573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.77 71.98 0.70 -0.90 16 2 C -0.07 -0.89 6.33 29.85 0.19 -0.70 16 3 C 0.15 2.68 6.17 42.50 0.26 2.94 16 4 C -0.13 -2.47 9.27 22.63 0.21 -2.26 16 5 C -0.07 -1.56 5.91 -19.90 -0.12 -1.68 16 6 C 0.56 13.98 7.80 86.88 0.68 14.66 16 7 O -0.56 -17.57 16.44 -3.74 -0.06 -17.63 16 8 N -0.71 -16.10 5.37 -465.66 -2.50 -18.60 16 9 C 0.15 3.82 5.12 86.38 0.44 4.27 16 10 C -0.09 -2.85 2.83 -9.40 -0.03 -2.88 16 11 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 12 C 0.14 5.01 6.41 86.85 0.56 5.57 16 13 N -0.62 -30.42 3.39 -692.01 -2.35 -32.76 16 14 C -0.24 -12.92 10.28 84.03 0.86 -12.06 16 15 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 16 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 17 N -0.95 -56.03 10.31 21.65 0.22 -55.81 16 18 Si 0.98 44.54 29.55 68.60 2.03 46.57 16 19 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 C 0.16 7.56 5.15 86.73 0.45 8.00 16 23 C 0.10 3.39 3.80 31.78 0.12 3.51 16 24 H 0.08 2.42 8.04 -2.39 -0.02 2.41 16 25 O -0.57 -18.46 13.39 -148.98 -1.99 -20.45 16 26 C -0.16 -2.85 9.55 22.75 0.22 -2.64 16 27 C 0.31 5.99 7.74 84.78 0.66 6.64 16 28 O -0.49 -8.01 13.56 -90.05 -1.22 -9.23 16 29 N -0.50 -10.32 9.87 -297.17 -2.93 -13.25 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.74 7.94 -2.39 -0.02 0.73 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 0.84 7.86 -2.39 -0.02 0.82 16 35 H 0.16 2.76 7.62 -2.91 -0.02 2.74 16 36 H 0.41 7.79 6.48 -92.71 -0.60 7.19 16 37 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.03 1.12 8.00 -2.38 -0.02 1.10 16 41 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 42 H 0.02 1.02 7.29 -2.39 -0.02 1.01 16 43 H 0.01 0.69 7.50 -2.38 -0.02 0.67 16 44 H 0.39 9.81 9.12 -74.06 -0.68 9.13 16 45 H 0.16 2.29 6.53 -2.91 -0.02 2.27 16 46 H 0.42 2.80 9.06 -74.06 -0.67 2.13 16 Total: -1.00 -74.96 383.34 -4.05 -79.01 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.91 Total: 22.96 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 5.67 Total: 19.19 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -7.56 Total: -120.42 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -3.28 Total: -47.31 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -74.96 -4.05 -79.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958267368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.179 kcal (2) G-P(sol) polarization free energy of solvation -74.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds