Wall clock time and date at job start Tue Mar 31 2020 20:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46788 * 2 1 4 4 C 1.38032 * 119.50853 * 125.00578 * 3 2 1 5 5 C 1.39919 * 119.12868 * 179.97438 * 4 3 2 6 6 C 1.48166 * 120.88988 * 179.97438 * 5 4 3 7 7 O 1.21507 * 119.99985 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99870 * 179.72325 * 6 5 4 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47042 * 180.02562 * 9 8 6 11 11 H 1.09004 * 110.88414 * 51.12384 * 10 9 8 12 12 C 1.54910 * 111.00502 * 287.19596 * 10 9 8 13 13 N 1.47427 * 104.83108 * 204.91605 * 12 10 9 14 14 C 1.36935 * 125.64691 * 204.15136 * 13 12 10 15 15 H 1.07995 * 120.00421 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99819 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99861 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00089 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47021 * 89.99885 * 18 16 14 20 20 H 1.48499 * 109.47084 * 210.00470 * 18 16 14 21 21 H 1.48506 * 109.46801 * 330.00025 * 18 16 14 22 22 C 1.47025 * 108.70473 * 24.13215 * 13 12 10 23 23 C 1.54330 * 107.26915 * 358.93700 * 22 13 12 24 24 H 1.09006 * 110.86832 * 96.23923 * 23 22 13 25 25 O 1.42896 * 110.71956 * 219.44330 * 23 22 13 26 26 C 1.39608 * 118.21983 * 0.27161 * 5 4 3 27 27 C 1.38853 * 118.94707 * 359.46517 * 26 5 4 28 28 O 1.35691 * 119.62020 * 180.27025 * 27 26 5 29 29 N 1.31871 * 119.51777 * 304.97761 * 3 2 1 30 30 H 1.09003 * 109.47260 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46823 * 299.99641 * 1 2 3 32 32 H 1.09003 * 109.47503 * 59.99359 * 1 2 3 33 33 H 1.08997 * 109.46554 * 240.00337 * 2 1 3 34 34 H 1.08997 * 109.47214 * 120.00024 * 2 1 3 35 35 H 1.07997 * 120.43246 * 359.94839 * 4 3 2 36 36 H 0.96998 * 120.00530 * 0.02562 * 8 6 5 37 37 H 1.08995 * 109.47073 * 300.00728 * 9 8 6 38 38 H 1.09001 * 109.46812 * 60.00615 * 9 8 6 39 39 H 1.08994 * 110.36803 * 323.76026 * 12 10 9 40 40 H 1.09001 * 110.36357 * 86.08385 * 12 10 9 41 41 H 0.97004 * 119.99715 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.88381 * 239.52486 * 22 13 12 43 43 H 1.09001 * 110.01044 * 118.42400 * 22 13 12 44 44 H 0.96695 * 114.00280 * 293.52022 * 25 23 22 45 45 H 1.08000 * 120.52782 * 179.72354 * 26 5 4 46 46 H 0.96691 * 113.99865 * 270.27053 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9086 1.8322 0.9840 5 6 3.3703 3.1530 0.9760 6 6 4.3112 3.6361 2.0137 7 8 4.6924 2.8818 2.8867 8 7 4.7488 4.9105 1.9857 9 6 5.6796 5.3881 3.0113 10 6 6.0149 6.8580 2.7510 11 1 5.1066 7.4474 2.6250 12 6 6.9485 7.0057 1.5237 13 7 7.6593 8.2788 1.7413 14 6 8.2187 9.0577 0.7638 15 1 8.1579 8.7528 -0.2704 16 6 8.8638 10.2394 1.1023 17 7 8.9383 10.6107 2.3628 18 14 9.6274 11.3016 -0.2311 19 1 8.6233 12.2805 -0.7197 20 1 10.7976 12.0280 0.3243 21 1 10.0685 10.4406 -1.3579 22 6 7.6679 8.5738 3.1816 23 6 6.8998 7.4361 3.8869 24 1 7.5873 6.6787 4.2635 25 8 6.0905 7.9527 4.9452 26 6 2.9158 4.0051 -0.0321 27 6 2.0385 3.5086 -0.9869 28 8 1.5925 4.3234 -1.9760 29 7 1.6286 2.2526 -0.9403 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.2332 1.1437 1.7501 36 1 4.4477 5.5115 1.2864 37 1 5.2190 5.2893 3.9942 38 1 6.5935 4.7950 2.9770 39 1 7.6563 6.1779 1.4837 40 1 6.3633 7.0503 0.6052 41 1 9.3895 11.4362 2.5993 42 1 7.1723 9.5266 3.3679 43 1 8.6936 8.6116 3.5485 44 1 6.5956 8.3260 5.6804 45 1 3.2447 5.0331 -0.0711 46 1 0.7810 4.8010 -1.7562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958267369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:54 Heat of formation + Delta-G solvation = -67.278596 kcal Electronic energy + Delta-G solvation = -28377.460401 eV Core-core repulsion = 24268.089248 eV Total energy + Delta-G solvation = -4109.371153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.15820 -39.61033 -38.28764 -37.58499 -35.28389 -34.82326 -34.31105 -32.68566 -32.15097 -30.02995 -29.53772 -27.68059 -26.02666 -25.18990 -24.20458 -23.16395 -22.51138 -20.76203 -20.32791 -19.92113 -18.97648 -17.53434 -17.34616 -16.94717 -16.66991 -16.07838 -15.87176 -15.68099 -15.31195 -14.96878 -14.66720 -14.59406 -14.33085 -13.99017 -13.72383 -13.53542 -13.19019 -12.77438 -12.70804 -12.50867 -12.28381 -12.14002 -12.09640 -11.82804 -11.54388 -11.41950 -11.28727 -11.04367 -10.86319 -10.66026 -10.50983 -10.21990 -10.10208 -9.94100 -9.87280 -9.72936 -9.28176 -9.20416 -9.13913 -8.70781 -6.95879 -5.80649 -3.15398 0.34356 0.58444 2.57789 2.88490 3.13718 3.35028 3.40236 3.42049 3.43879 4.03011 4.25689 4.39937 4.56962 4.58636 4.66669 4.77105 4.84506 4.94236 4.95916 5.07531 5.10928 5.33191 5.36521 5.40274 5.44693 5.53177 5.59769 5.63256 5.74205 5.78254 5.89063 5.92148 5.96142 6.06054 6.12840 6.22239 6.31387 6.45787 6.73795 7.09752 7.30631 7.33389 7.44060 7.51056 7.69690 7.96593 8.12759 8.14290 9.10805 9.71264 10.34987 11.30938 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.002412 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.392339 B =11603.729437 C =12901.088585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C 0.151 3.849 4 C -0.125 4.125 5 C -0.064 4.064 6 C 0.556 3.444 7 O -0.530 6.530 8 N -0.713 5.713 9 C 0.132 3.868 10 C -0.109 4.109 11 H 0.090 0.910 12 C 0.141 3.859 13 N -0.602 5.602 14 C -0.231 4.231 15 H 0.080 0.920 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.152 3.848 23 C 0.083 3.917 24 H 0.057 0.943 25 O -0.567 6.567 26 C -0.161 4.161 27 C 0.315 3.685 28 O -0.478 6.478 29 N -0.486 5.486 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.152 0.848 36 H 0.403 0.597 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.024 0.976 40 H 0.042 0.958 41 H 0.253 0.747 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.377 0.623 45 H 0.147 0.853 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.620 -16.700 -1.104 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C 0.013 3.987 4 C -0.146 4.146 5 C -0.075 4.075 6 C 0.342 3.658 7 O -0.407 6.407 8 N -0.364 5.364 9 C 0.009 3.991 10 C -0.128 4.128 11 H 0.108 0.892 12 C 0.014 3.986 13 N -0.329 5.329 14 C -0.359 4.359 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.570 5.570 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.027 3.973 23 C 0.023 3.977 24 H 0.075 0.925 25 O -0.372 6.372 26 C -0.183 4.183 27 C 0.136 3.864 28 O -0.285 6.285 29 N -0.206 5.206 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.170 0.830 36 H 0.238 0.762 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.224 0.776 45 H 0.165 0.835 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -15.747 -17.632 -1.821 23.710 hybrid contribution 1.002 1.830 0.070 2.088 sum -14.745 -15.802 -1.752 21.684 Atomic orbital electron populations 1.21684 0.93862 1.01963 1.02696 1.20552 0.97240 0.89663 1.03737 1.21006 0.92729 0.95896 0.89024 1.22140 0.96833 0.95545 1.00048 1.20320 0.97227 0.94572 0.95398 1.18062 0.80906 0.82317 0.84562 1.90783 1.57756 1.55210 1.36917 1.45969 1.47322 1.11629 1.31460 1.21477 0.92614 0.94261 0.90755 1.22627 0.99996 0.93309 0.96913 0.89157 1.21633 0.92564 0.90012 0.94361 1.44304 1.64863 1.20949 1.02811 1.19063 1.28579 1.00657 0.87632 0.90231 1.24826 1.00837 0.98146 0.96581 1.69938 1.47795 1.24246 1.14976 0.86085 0.78590 0.80346 0.80529 1.21503 1.21614 1.20622 1.21823 0.97948 0.94138 0.83423 1.23121 0.91479 0.96280 0.86822 0.92467 1.86412 1.37254 1.81434 1.32082 1.22351 1.00244 1.01651 0.94031 1.18936 0.93304 0.87235 0.86940 1.84825 1.46848 1.58041 1.38772 1.66768 1.25697 1.04022 1.24160 0.92096 0.92796 0.91557 0.89550 0.89701 0.83016 0.76184 0.90775 0.90919 0.95833 0.93927 0.93639 0.92385 0.93585 0.77633 0.83502 0.73962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.77 37.16 0.36 -0.56 16 2 C -0.07 -0.51 6.33 -27.88 -0.18 -0.68 16 3 C 0.15 1.46 6.17 -82.65 -0.51 0.95 16 4 C -0.12 -1.28 9.27 -39.03 -0.36 -1.64 16 5 C -0.06 -0.72 5.91 -104.68 -0.62 -1.34 16 6 C 0.56 7.37 7.80 -12.18 -0.10 7.28 16 7 O -0.53 -8.60 16.44 5.36 0.09 -8.52 16 8 N -0.71 -8.85 5.46 -61.15 -0.33 -9.19 16 9 C 0.13 1.87 5.13 -4.04 -0.02 1.85 16 10 C -0.11 -1.79 2.77 -88.47 -0.25 -2.03 16 11 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 12 C 0.14 2.70 6.65 -2.53 -0.02 2.68 16 13 N -0.60 -14.77 3.39 -170.07 -0.58 -15.35 16 14 C -0.23 -6.27 10.28 -15.06 -0.15 -6.42 16 15 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 16 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 17 N -0.92 -26.42 10.31 55.49 0.57 -25.85 16 18 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.15 3.52 5.15 -3.06 -0.02 3.51 16 23 C 0.08 1.49 3.80 -24.89 -0.09 1.39 16 24 H 0.06 0.95 8.04 -51.93 -0.42 0.54 16 25 O -0.57 -9.46 13.39 -35.23 -0.47 -9.94 16 26 C -0.16 -1.59 9.55 -38.84 -0.37 -1.96 16 27 C 0.31 3.27 7.74 -17.17 -0.13 3.14 16 28 O -0.48 -4.31 13.56 -18.78 -0.25 -4.56 16 29 N -0.49 -5.31 9.87 -9.59 -0.09 -5.40 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.49 7.94 -51.93 -0.41 0.08 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.44 7.86 -51.93 -0.41 0.03 16 35 H 0.15 1.43 7.62 -52.49 -0.40 1.03 16 36 H 0.40 4.25 6.61 -40.82 -0.27 3.98 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 39 H 0.02 0.46 7.91 -51.93 -0.41 0.05 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.06 1.52 7.30 -51.93 -0.38 1.14 16 43 H 0.05 1.17 7.50 -51.93 -0.39 0.78 16 44 H 0.38 4.85 9.12 45.56 0.42 5.27 16 45 H 0.15 1.19 6.53 -52.49 -0.34 0.84 16 46 H 0.40 1.59 9.06 45.56 0.41 2.00 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -34.74 383.54 -7.96 -42.70 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.10 Total: 7.79 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -2.55 Total: 5.87 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.43 Total: -55.79 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.64 Total: -23.02 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.74 -7.96 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958267369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.577 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds