Wall clock time and date at job start Tue Mar 31 2020 20:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46788 * 2 1 4 4 C 1.38032 * 119.50853 * 125.00578 * 3 2 1 5 5 C 1.39919 * 119.12868 * 179.97438 * 4 3 2 6 6 C 1.48166 * 120.88988 * 179.97438 * 5 4 3 7 7 O 1.21507 * 119.99985 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99870 * 179.72325 * 6 5 4 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47042 * 180.02562 * 9 8 6 11 11 H 1.09004 * 110.88414 * 51.12384 * 10 9 8 12 12 C 1.54910 * 111.00502 * 287.19596 * 10 9 8 13 13 N 1.47427 * 104.83108 * 204.91605 * 12 10 9 14 14 C 1.36935 * 125.64691 * 204.15136 * 13 12 10 15 15 H 1.07995 * 120.00421 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99819 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99861 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00089 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47021 * 89.99885 * 18 16 14 20 20 H 1.48499 * 109.47084 * 210.00470 * 18 16 14 21 21 H 1.48506 * 109.46801 * 330.00025 * 18 16 14 22 22 C 1.47025 * 108.70473 * 24.13215 * 13 12 10 23 23 C 1.54330 * 107.26915 * 358.93700 * 22 13 12 24 24 H 1.09006 * 110.86832 * 96.23923 * 23 22 13 25 25 O 1.42896 * 110.71956 * 219.44330 * 23 22 13 26 26 C 1.39608 * 118.21983 * 0.27161 * 5 4 3 27 27 C 1.38853 * 118.94707 * 359.46517 * 26 5 4 28 28 O 1.35691 * 119.62020 * 180.27025 * 27 26 5 29 29 N 1.31871 * 119.51777 * 304.97761 * 3 2 1 30 30 H 1.09003 * 109.47260 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46823 * 299.99641 * 1 2 3 32 32 H 1.09003 * 109.47503 * 59.99359 * 1 2 3 33 33 H 1.08997 * 109.46554 * 240.00337 * 2 1 3 34 34 H 1.08997 * 109.47214 * 120.00024 * 2 1 3 35 35 H 1.07997 * 120.43246 * 359.94839 * 4 3 2 36 36 H 0.96998 * 120.00530 * 0.02562 * 8 6 5 37 37 H 1.08995 * 109.47073 * 300.00728 * 9 8 6 38 38 H 1.09001 * 109.46812 * 60.00615 * 9 8 6 39 39 H 1.08994 * 110.36803 * 323.76026 * 12 10 9 40 40 H 1.09001 * 110.36357 * 86.08385 * 12 10 9 41 41 H 0.97004 * 119.99715 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.88381 * 239.52486 * 22 13 12 43 43 H 1.09001 * 110.01044 * 118.42400 * 22 13 12 44 44 H 0.96695 * 114.00280 * 293.52022 * 25 23 22 45 45 H 1.08000 * 120.52782 * 179.72354 * 26 5 4 46 46 H 0.96691 * 113.99865 * 270.27053 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9086 1.8322 0.9840 5 6 3.3703 3.1530 0.9760 6 6 4.3112 3.6361 2.0137 7 8 4.6924 2.8818 2.8867 8 7 4.7488 4.9105 1.9857 9 6 5.6796 5.3881 3.0113 10 6 6.0149 6.8580 2.7510 11 1 5.1066 7.4474 2.6250 12 6 6.9485 7.0057 1.5237 13 7 7.6593 8.2788 1.7413 14 6 8.2187 9.0577 0.7638 15 1 8.1579 8.7528 -0.2704 16 6 8.8638 10.2394 1.1023 17 7 8.9383 10.6107 2.3628 18 14 9.6274 11.3016 -0.2311 19 1 8.6233 12.2805 -0.7197 20 1 10.7976 12.0280 0.3243 21 1 10.0685 10.4406 -1.3579 22 6 7.6679 8.5738 3.1816 23 6 6.8998 7.4361 3.8869 24 1 7.5873 6.6787 4.2635 25 8 6.0905 7.9527 4.9452 26 6 2.9158 4.0051 -0.0321 27 6 2.0385 3.5086 -0.9869 28 8 1.5925 4.3234 -1.9760 29 7 1.6286 2.2526 -0.9403 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.2332 1.1437 1.7501 36 1 4.4477 5.5115 1.2864 37 1 5.2190 5.2893 3.9942 38 1 6.5935 4.7950 2.9770 39 1 7.6563 6.1779 1.4837 40 1 6.3633 7.0503 0.6052 41 1 9.3895 11.4362 2.5993 42 1 7.1723 9.5266 3.3679 43 1 8.6936 8.6116 3.5485 44 1 6.5956 8.3260 5.6804 45 1 3.2447 5.0331 -0.0711 46 1 0.7810 4.8010 -1.7562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958267369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:53 Heat of formation + Delta-G solvation = -97.220222 kcal Electronic energy + Delta-G solvation = -28378.758767 eV Core-core repulsion = 24268.089248 eV Total energy + Delta-G solvation = -4110.669519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.97250 -40.67174 -39.73716 -38.28687 -36.65923 -36.22984 -35.06248 -34.03443 -33.29158 -31.45765 -30.41312 -29.33741 -27.45705 -26.29300 -25.33063 -24.22875 -23.31990 -22.24681 -21.69883 -21.08673 -19.83409 -18.92043 -18.45531 -18.22892 -17.88649 -17.09683 -16.83885 -16.75146 -16.52336 -16.30460 -15.81527 -15.68496 -15.27804 -15.20369 -14.79192 -14.75752 -14.41358 -14.13529 -13.99458 -13.70468 -13.48366 -13.21058 -13.11172 -12.90363 -12.78123 -12.73932 -12.45666 -12.36884 -12.30836 -11.95050 -11.92805 -11.80881 -11.64175 -11.34184 -11.05019 -10.84523 -10.74048 -10.53822 -10.22620 -9.92235 -8.94726 -7.87659 -5.23974 -0.48479 -0.14317 1.46161 1.47327 1.55960 1.66028 1.87419 2.42873 2.47045 2.65452 3.20909 3.30874 3.33686 3.44446 3.54755 3.70259 3.83576 3.86280 3.88113 4.13493 4.15146 4.24511 4.39329 4.41029 4.42468 4.46138 4.59399 4.67750 4.73446 4.79726 4.85370 4.91925 4.93176 5.08460 5.16812 5.20489 5.31005 5.33611 5.41367 5.47380 5.48016 5.70750 6.15489 6.31468 6.54853 6.81146 6.88265 6.96132 7.06255 7.72953 8.35858 9.22358 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.002412 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.392339 B =11603.729437 C =12901.088585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 C 0.150 3.850 4 C -0.129 4.129 5 C -0.075 4.075 6 C 0.560 3.440 7 O -0.562 6.562 8 N -0.706 5.706 9 C 0.145 3.855 10 C -0.090 4.090 11 H 0.089 0.911 12 C 0.137 3.863 13 N -0.625 5.625 14 C -0.242 4.242 15 H 0.087 0.913 16 C -0.067 4.067 17 N -0.951 5.951 18 Si 0.978 3.022 19 H -0.286 1.286 20 H -0.296 1.296 21 H -0.268 1.268 22 C 0.161 3.839 23 C 0.097 3.903 24 H 0.077 0.923 25 O -0.569 6.569 26 C -0.158 4.158 27 C 0.310 3.690 28 O -0.487 6.487 29 N -0.502 5.502 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.158 0.842 36 H 0.413 0.587 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.057 0.943 41 H 0.247 0.753 42 H 0.020 0.980 43 H 0.013 0.987 44 H 0.393 0.607 45 H 0.164 0.836 46 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.748 -18.069 -1.928 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C 0.012 3.988 4 C -0.150 4.150 5 C -0.086 4.086 6 C 0.347 3.653 7 O -0.442 6.442 8 N -0.357 5.357 9 C 0.022 3.978 10 C -0.110 4.110 11 H 0.108 0.892 12 C 0.012 3.988 13 N -0.352 5.352 14 C -0.370 4.370 15 H 0.104 0.896 16 C -0.260 4.260 17 N -0.600 5.600 18 Si 0.807 3.193 19 H -0.213 1.213 20 H -0.223 1.223 21 H -0.193 1.193 22 C 0.035 3.965 23 C 0.037 3.963 24 H 0.095 0.905 25 O -0.376 6.376 26 C -0.179 4.179 27 C 0.131 3.869 28 O -0.297 6.297 29 N -0.223 5.223 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.176 0.824 36 H 0.250 0.750 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.031 0.969 44 H 0.243 0.757 45 H 0.181 0.819 46 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -16.915 -19.005 -2.663 25.581 hybrid contribution 1.302 2.241 0.303 2.610 sum -15.613 -16.764 -2.360 23.030 Atomic orbital electron populations 1.21652 0.93488 1.02833 1.01850 1.20681 0.97493 0.88175 1.04901 1.21410 0.92185 0.96862 0.88344 1.22280 0.96899 0.95408 1.00383 1.20195 0.97600 0.95282 0.95480 1.18290 0.80647 0.81983 0.84411 1.90767 1.59052 1.56024 1.38329 1.45843 1.46825 1.11733 1.31310 1.21218 0.92999 0.92326 0.91294 1.22420 0.98924 0.94817 0.94791 0.89248 1.21819 0.92849 0.87809 0.96274 1.44607 1.65223 1.22457 1.02929 1.19472 1.27981 1.00946 0.88635 0.89571 1.25663 1.02026 0.99722 0.98592 1.70156 1.48800 1.24342 1.16708 0.85079 0.77342 0.78607 0.78308 1.21263 1.22251 1.19313 1.21593 0.96456 0.94738 0.83734 1.22883 0.91703 0.94518 0.87235 0.90546 1.86382 1.37468 1.81494 1.32294 1.22446 0.99816 1.02217 0.93447 1.19081 0.93387 0.87367 0.87093 1.84776 1.48255 1.58088 1.38611 1.66843 1.26195 1.04482 1.24755 0.90385 0.93109 0.92884 0.89003 0.87879 0.82448 0.74975 0.90586 0.91018 0.95179 0.92521 0.94387 0.96226 0.96928 0.75701 0.81882 0.71589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.77 71.98 0.70 -0.86 16 2 C -0.07 -0.89 6.33 29.85 0.19 -0.70 16 3 C 0.15 2.67 6.17 42.50 0.26 2.93 16 4 C -0.13 -2.47 9.27 22.63 0.21 -2.26 16 5 C -0.07 -1.56 5.91 -19.90 -0.12 -1.67 16 6 C 0.56 13.95 7.80 86.88 0.68 14.62 16 7 O -0.56 -17.57 16.44 -3.74 -0.06 -17.63 16 8 N -0.71 -16.03 5.46 -465.66 -2.54 -18.57 16 9 C 0.15 3.80 5.13 86.38 0.44 4.25 16 10 C -0.09 -2.80 2.77 -9.40 -0.03 -2.82 16 11 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 12 C 0.14 5.08 6.65 86.85 0.58 5.66 16 13 N -0.63 -30.73 3.39 -691.97 -2.35 -33.08 16 14 C -0.24 -13.11 10.28 84.04 0.86 -12.25 16 15 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 16 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 17 N -0.95 -56.11 10.31 21.65 0.22 -55.89 16 18 Si 0.98 44.94 29.55 68.60 2.03 46.97 16 19 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 C 0.16 7.60 5.15 86.73 0.45 8.05 16 23 C 0.10 3.38 3.80 31.79 0.12 3.50 16 24 H 0.08 2.41 8.04 -2.38 -0.02 2.40 16 25 O -0.57 -18.24 13.39 -148.98 -1.99 -20.23 16 26 C -0.16 -2.83 9.55 22.75 0.22 -2.61 16 27 C 0.31 5.95 7.74 84.78 0.66 6.60 16 28 O -0.49 -7.93 13.56 -90.10 -1.22 -9.16 16 29 N -0.50 -10.28 9.87 -297.15 -2.93 -13.21 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.05 0.73 7.94 -2.39 -0.02 0.71 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 0.84 7.86 -2.39 -0.02 0.82 16 35 H 0.16 2.76 7.62 -2.91 -0.02 2.73 16 36 H 0.41 7.70 6.61 -92.71 -0.61 7.09 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 1.95 7.96 -2.39 -0.02 1.93 16 39 H 0.03 1.10 7.91 -2.39 -0.02 1.08 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 41 H 0.25 14.22 8.31 -92.71 -0.77 13.44 16 42 H 0.02 1.06 7.30 -2.39 -0.02 1.05 16 43 H 0.01 0.67 7.50 -2.39 -0.02 0.65 16 44 H 0.39 9.70 9.12 -74.06 -0.68 9.02 16 45 H 0.16 2.25 6.53 -2.91 -0.02 2.23 16 46 H 0.42 2.56 9.06 -74.06 -0.67 1.89 16 Total: -1.00 -75.40 383.54 -4.08 -79.48 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -0.92 Total: 22.16 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 5.69 Total: 19.16 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -7.60 Total: -120.75 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -3.28 Total: -47.02 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -75.40 -4.08 -79.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958267369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.738 kcal (2) G-P(sol) polarization free energy of solvation -75.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds