Wall clock time and date at job start Tue Mar 31 2020 20:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47311 * 2 1 4 4 C 1.38021 * 119.51547 * 125.26096 * 3 2 1 5 5 C 1.39927 * 119.13463 * 180.25199 * 4 3 2 6 6 C 1.48155 * 120.89233 * 179.77273 * 5 4 3 7 7 O 1.21513 * 120.00065 * 359.71890 * 6 5 4 8 8 N 1.34777 * 120.00158 * 179.71773 * 6 5 4 9 9 C 1.46496 * 120.00371 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47280 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.91790 * 51.10268 * 10 9 8 12 12 C 1.54904 * 111.00688 * 287.19860 * 10 9 8 13 13 N 1.47435 * 104.83391 * 204.91696 * 12 10 9 14 14 C 1.36934 * 125.64724 * 204.16628 * 13 12 10 15 15 H 1.08001 * 120.00082 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99885 * 179.97438 * 14 13 12 17 17 N 1.31622 * 120.00122 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00256 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46807 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47389 * 119.99675 * 18 16 14 21 21 H 1.48506 * 109.47318 * 240.00098 * 18 16 14 22 22 C 1.47022 * 108.70089 * 24.12919 * 13 12 10 23 23 C 1.54322 * 107.27269 * 358.93984 * 22 13 12 24 24 H 1.09002 * 110.71963 * 219.44477 * 23 22 13 25 25 O 1.42896 * 110.71801 * 96.34675 * 23 22 13 26 26 C 1.39613 * 118.21553 * 359.49908 * 5 4 3 27 27 C 1.38853 * 118.94922 * 0.25521 * 26 5 4 28 28 O 1.35690 * 119.62293 * 179.97438 * 27 26 5 29 29 N 1.31882 * 119.51331 * 305.00351 * 3 2 1 30 30 H 1.09005 * 109.47056 * 299.99848 * 1 2 3 31 31 H 1.09005 * 109.47194 * 59.99756 * 1 2 3 32 32 H 1.08997 * 109.47417 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47056 * 240.00151 * 2 1 3 34 34 H 1.08992 * 109.47184 * 119.99977 * 2 1 3 35 35 H 1.08002 * 120.42892 * 0.02562 * 4 3 2 36 36 H 0.97005 * 119.99874 * 0.02562 * 8 6 5 37 37 H 1.09004 * 109.47035 * 60.00168 * 9 8 6 38 38 H 1.08997 * 109.47364 * 300.00303 * 9 8 6 39 39 H 1.08997 * 110.37110 * 86.08075 * 12 10 9 40 40 H 1.09005 * 110.37140 * 323.74975 * 12 10 9 41 41 H 0.96995 * 120.00311 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.87665 * 239.52284 * 22 13 12 43 43 H 1.08996 * 110.00949 * 118.43459 * 22 13 12 44 44 H 0.96702 * 113.99631 * 63.84596 * 25 23 22 45 45 H 1.07998 * 120.52900 * 180.27374 * 26 5 4 46 46 H 0.96705 * 113.99774 * 89.99761 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9127 1.8307 0.9807 5 6 3.3700 3.1531 0.9762 6 6 4.3116 3.6360 2.0132 7 8 4.6931 2.8816 2.8861 8 7 4.7450 4.9119 1.9885 9 6 5.6755 5.3895 3.0142 10 6 6.0065 6.8610 2.7571 11 1 5.0969 7.4486 2.6332 12 6 6.9382 7.0142 1.5291 13 7 7.6459 8.2888 1.7490 14 6 8.2017 9.0718 0.7727 15 1 8.1409 8.7689 -0.2622 16 6 8.8431 10.2547 1.1132 17 7 8.9167 10.6241 2.3744 18 14 9.6019 11.3226 -0.2185 19 1 9.3848 10.6895 -1.5442 20 1 8.9654 12.6641 -0.1999 21 1 11.0594 11.4627 0.0298 22 6 7.6554 8.5802 3.1900 23 6 6.8913 7.4387 3.8934 24 1 6.2738 7.8291 4.7023 25 8 7.7989 6.4503 4.3844 26 6 2.9197 4.0038 -0.0350 27 6 2.0378 3.5089 -0.9866 28 8 1.5911 4.3239 -1.9752 29 7 1.6282 2.2528 -0.9401 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.2415 1.1407 1.7438 36 1 4.4401 5.5142 1.2919 37 1 6.5914 4.7996 2.9768 38 1 5.2167 5.2863 3.9975 39 1 6.3519 7.0594 0.6113 40 1 7.6485 6.1885 1.4862 41 1 9.3653 11.4505 2.6123 42 1 7.1574 9.5312 3.3791 43 1 8.6814 8.6200 3.5558 44 1 8.4002 6.7740 5.0691 45 1 3.2521 5.0305 -0.0768 46 1 2.1438 4.3192 -2.7687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958267371.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:01 Heat of formation + Delta-G solvation = -65.927005 kcal Electronic energy + Delta-G solvation = -28473.075056 eV Core-core repulsion = 24363.762512 eV Total energy + Delta-G solvation = -4109.312544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13577 -39.57487 -38.33589 -37.57113 -35.09759 -34.70321 -34.28767 -32.64656 -32.08306 -30.00292 -29.51380 -27.83402 -25.99107 -25.16760 -24.21627 -23.16767 -22.49005 -20.72747 -20.23907 -19.83911 -18.93969 -17.47285 -17.44012 -17.17261 -16.43106 -15.94705 -15.91001 -15.39255 -15.24853 -14.96332 -14.86245 -14.38326 -14.14703 -13.97540 -13.79070 -13.48598 -13.35930 -12.81226 -12.64159 -12.61774 -12.35306 -12.14396 -11.96231 -11.78337 -11.49428 -11.40193 -11.28613 -10.88568 -10.70673 -10.57331 -10.44647 -10.20056 -10.10517 -10.04010 -9.86337 -9.69853 -9.24894 -9.18880 -9.06161 -8.72228 -6.92987 -5.80461 -3.13785 0.36431 0.59811 2.61246 2.93125 3.16199 3.34346 3.40040 3.42392 3.45414 4.05266 4.29305 4.41227 4.58711 4.60449 4.64093 4.80225 4.86454 4.94944 5.03402 5.11530 5.24728 5.32637 5.35508 5.41648 5.47691 5.52860 5.54737 5.65184 5.76260 5.82895 5.92206 5.96452 6.02656 6.08073 6.28073 6.29995 6.34721 6.51379 6.80866 7.10742 7.31858 7.35721 7.42174 7.52230 7.68438 8.01606 8.14413 8.17924 9.12272 9.72872 10.37993 11.31655 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.002435 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.883919 B =11497.149741 C =12910.526700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C 0.151 3.849 4 C -0.125 4.125 5 C -0.064 4.064 6 C 0.555 3.445 7 O -0.528 6.528 8 N -0.715 5.715 9 C 0.140 3.860 10 C -0.110 4.110 11 H 0.090 0.910 12 C 0.144 3.856 13 N -0.603 5.603 14 C -0.227 4.227 15 H 0.079 0.921 16 C -0.009 4.009 17 N -0.924 5.924 18 Si 0.913 3.087 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.153 3.847 23 C 0.083 3.917 24 H 0.057 0.943 25 O -0.565 6.565 26 C -0.161 4.161 27 C 0.315 3.685 28 O -0.479 6.479 29 N -0.487 5.487 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.152 0.848 36 H 0.401 0.599 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.036 0.964 40 H 0.026 0.974 41 H 0.252 0.748 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.376 0.624 45 H 0.147 0.853 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.189 -16.625 -2.588 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C 0.013 3.987 4 C -0.146 4.146 5 C -0.075 4.075 6 C 0.340 3.660 7 O -0.405 6.405 8 N -0.367 5.367 9 C 0.017 3.983 10 C -0.130 4.130 11 H 0.108 0.892 12 C 0.018 3.982 13 N -0.329 5.329 14 C -0.355 4.355 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.572 5.572 18 Si 0.744 3.256 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.027 3.973 23 C 0.023 3.977 24 H 0.075 0.925 25 O -0.370 6.370 26 C -0.183 4.183 27 C 0.135 3.865 28 O -0.286 6.286 29 N -0.207 5.207 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.170 0.830 36 H 0.236 0.764 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.224 0.776 45 H 0.165 0.835 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -15.091 -17.396 -2.668 23.183 hybrid contribution 1.526 1.829 -0.404 2.416 sum -13.565 -15.567 -3.072 20.875 Atomic orbital electron populations 1.21687 0.93857 1.01919 1.02811 1.20547 0.97243 0.89656 1.03688 1.21009 0.92584 0.95791 0.89295 1.22142 0.97264 0.95556 0.99644 1.20349 0.97305 0.94549 0.95272 1.18054 0.80903 0.82400 0.84619 1.90790 1.57581 1.55249 1.36912 1.46059 1.47415 1.11426 1.31753 1.21268 0.92656 0.94403 0.89956 1.22696 0.98574 0.94048 0.97686 0.89208 1.21595 0.92649 0.89997 0.93947 1.44380 1.65117 1.20681 1.02749 1.19109 1.28518 1.00202 0.87676 0.90312 1.24806 1.00975 0.98212 0.96557 1.69934 1.48167 1.24238 1.14886 0.86018 0.78744 0.80263 0.80569 1.20488 1.21718 1.21719 1.21867 0.98421 0.93236 0.83731 1.23117 0.90695 0.89604 0.94279 0.92469 1.86387 1.51648 1.39019 1.59988 1.22341 0.98033 1.01727 0.96206 1.18936 0.90756 0.86447 0.90318 1.84809 1.54935 1.61292 1.27570 1.66772 1.24412 1.03661 1.25846 0.92785 0.91521 0.92098 0.89578 0.89711 0.83020 0.76389 0.89957 0.91333 0.94562 0.95629 0.93738 0.92904 0.93180 0.77637 0.83530 0.73858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.77 37.16 0.36 -0.63 16 2 C -0.07 -0.51 6.33 -27.89 -0.18 -0.69 16 3 C 0.15 1.48 6.18 -82.65 -0.51 0.96 16 4 C -0.13 -1.31 9.27 -39.03 -0.36 -1.67 16 5 C -0.06 -0.72 5.91 -104.68 -0.62 -1.34 16 6 C 0.55 7.54 7.80 -12.19 -0.10 7.45 16 7 O -0.53 -8.86 16.44 5.35 0.09 -8.77 16 8 N -0.72 -9.06 5.46 -61.16 -0.33 -9.40 16 9 C 0.14 2.07 4.61 -4.05 -0.02 2.05 16 10 C -0.11 -1.79 2.98 -88.47 -0.26 -2.05 16 11 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 12 C 0.14 2.84 6.64 -2.53 -0.02 2.82 16 13 N -0.60 -14.81 3.39 -170.07 -0.58 -15.38 16 14 C -0.23 -6.15 10.28 -15.06 -0.15 -6.30 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 16 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 17 N -0.92 -26.36 10.31 55.49 0.57 -25.79 16 18 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.15 3.49 5.14 -3.06 -0.02 3.48 16 23 C 0.08 1.46 4.08 -24.89 -0.10 1.36 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 O -0.56 -9.52 12.26 -35.23 -0.43 -9.95 16 26 C -0.16 -1.61 9.55 -38.84 -0.37 -1.98 16 27 C 0.31 3.29 7.74 -17.16 -0.13 3.15 16 28 O -0.48 -4.32 13.56 -18.77 -0.25 -4.57 16 29 N -0.49 -5.35 9.87 -9.59 -0.09 -5.45 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.46 7.86 -51.93 -0.41 0.05 16 35 H 0.15 1.46 7.62 -52.49 -0.40 1.06 16 36 H 0.40 4.24 6.61 -40.82 -0.27 3.97 16 37 H 0.08 1.39 7.56 -51.93 -0.39 1.00 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.03 0.54 7.91 -51.93 -0.41 0.13 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 43 H 0.05 1.28 7.43 -51.93 -0.39 0.89 16 44 H 0.38 5.03 9.12 45.56 0.42 5.44 16 45 H 0.15 1.19 6.53 -52.49 -0.34 0.85 16 46 H 0.40 1.69 9.06 45.56 0.41 2.10 16 LS Contribution 382.07 15.07 5.76 5.76 Total: -1.00 -34.73 382.07 -7.95 -42.67 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.08 Total: 8.00 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -2.57 Total: 6.24 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.43 Total: -56.01 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.60 Total: -23.29 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.73 -7.95 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958267371.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.252 kcal (2) G-P(sol) polarization free energy of solvation -34.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds