Wall clock time and date at job start Tue Mar 31 2020 20:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47311 * 2 1 4 4 C 1.38021 * 119.51547 * 125.26096 * 3 2 1 5 5 C 1.39927 * 119.13463 * 180.25199 * 4 3 2 6 6 C 1.48155 * 120.89233 * 179.77273 * 5 4 3 7 7 O 1.21513 * 120.00065 * 359.71890 * 6 5 4 8 8 N 1.34777 * 120.00158 * 179.71773 * 6 5 4 9 9 C 1.46496 * 120.00371 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47280 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.91790 * 51.10268 * 10 9 8 12 12 C 1.54904 * 111.00688 * 287.19860 * 10 9 8 13 13 N 1.47435 * 104.83391 * 204.91696 * 12 10 9 14 14 C 1.36934 * 125.64724 * 204.16628 * 13 12 10 15 15 H 1.08001 * 120.00082 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99885 * 179.97438 * 14 13 12 17 17 N 1.31622 * 120.00122 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00256 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46807 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47389 * 119.99675 * 18 16 14 21 21 H 1.48506 * 109.47318 * 240.00098 * 18 16 14 22 22 C 1.47022 * 108.70089 * 24.12919 * 13 12 10 23 23 C 1.54322 * 107.27269 * 358.93984 * 22 13 12 24 24 H 1.09002 * 110.71963 * 219.44477 * 23 22 13 25 25 O 1.42896 * 110.71801 * 96.34675 * 23 22 13 26 26 C 1.39613 * 118.21553 * 359.49908 * 5 4 3 27 27 C 1.38853 * 118.94922 * 0.25521 * 26 5 4 28 28 O 1.35690 * 119.62293 * 179.97438 * 27 26 5 29 29 N 1.31882 * 119.51331 * 305.00351 * 3 2 1 30 30 H 1.09005 * 109.47056 * 299.99848 * 1 2 3 31 31 H 1.09005 * 109.47194 * 59.99756 * 1 2 3 32 32 H 1.08997 * 109.47417 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47056 * 240.00151 * 2 1 3 34 34 H 1.08992 * 109.47184 * 119.99977 * 2 1 3 35 35 H 1.08002 * 120.42892 * 0.02562 * 4 3 2 36 36 H 0.97005 * 119.99874 * 0.02562 * 8 6 5 37 37 H 1.09004 * 109.47035 * 60.00168 * 9 8 6 38 38 H 1.08997 * 109.47364 * 300.00303 * 9 8 6 39 39 H 1.08997 * 110.37110 * 86.08075 * 12 10 9 40 40 H 1.09005 * 110.37140 * 323.74975 * 12 10 9 41 41 H 0.96995 * 120.00311 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.87665 * 239.52284 * 22 13 12 43 43 H 1.08996 * 110.00949 * 118.43459 * 22 13 12 44 44 H 0.96702 * 113.99631 * 63.84596 * 25 23 22 45 45 H 1.07998 * 120.52900 * 180.27374 * 26 5 4 46 46 H 0.96705 * 113.99774 * 89.99761 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9127 1.8307 0.9807 5 6 3.3700 3.1531 0.9762 6 6 4.3116 3.6360 2.0132 7 8 4.6931 2.8816 2.8861 8 7 4.7450 4.9119 1.9885 9 6 5.6755 5.3895 3.0142 10 6 6.0065 6.8610 2.7571 11 1 5.0969 7.4486 2.6332 12 6 6.9382 7.0142 1.5291 13 7 7.6459 8.2888 1.7490 14 6 8.2017 9.0718 0.7727 15 1 8.1409 8.7689 -0.2622 16 6 8.8431 10.2547 1.1132 17 7 8.9167 10.6241 2.3744 18 14 9.6019 11.3226 -0.2185 19 1 9.3848 10.6895 -1.5442 20 1 8.9654 12.6641 -0.1999 21 1 11.0594 11.4627 0.0298 22 6 7.6554 8.5802 3.1900 23 6 6.8913 7.4387 3.8934 24 1 6.2738 7.8291 4.7023 25 8 7.7989 6.4503 4.3844 26 6 2.9197 4.0038 -0.0350 27 6 2.0378 3.5089 -0.9866 28 8 1.5911 4.3239 -1.9752 29 7 1.6282 2.2528 -0.9401 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.2415 1.1407 1.7438 36 1 4.4401 5.5142 1.2919 37 1 6.5914 4.7996 2.9768 38 1 5.2167 5.2863 3.9975 39 1 6.3519 7.0594 0.6113 40 1 7.6485 6.1885 1.4862 41 1 9.3653 11.4505 2.6123 42 1 7.1574 9.5312 3.3791 43 1 8.6814 8.6200 3.5558 44 1 8.4002 6.7740 5.0691 45 1 3.2521 5.0305 -0.0768 46 1 2.1438 4.3192 -2.7687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958267371.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:00 Heat of formation + Delta-G solvation = -95.814147 kcal Electronic energy + Delta-G solvation = -28474.371060 eV Core-core repulsion = 24363.762512 eV Total energy + Delta-G solvation = -4110.608547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.96482 -40.66831 -39.77062 -38.27905 -36.42103 -36.21228 -35.04665 -33.95567 -33.28341 -31.42223 -30.41866 -29.46466 -27.44682 -26.30648 -25.35228 -24.23498 -23.31209 -22.21818 -21.58388 -21.02320 -19.81777 -19.11568 -18.43488 -18.18200 -17.77887 -16.89223 -16.78335 -16.72843 -16.45362 -16.25774 -15.82230 -15.61664 -15.39736 -15.10601 -14.95560 -14.72165 -14.42202 -14.35285 -14.05930 -13.60589 -13.33052 -13.14134 -13.10582 -12.97356 -12.79772 -12.71124 -12.35979 -12.33307 -12.10656 -11.94626 -11.91551 -11.78876 -11.68585 -11.33921 -11.04729 -10.79839 -10.74019 -10.53846 -10.19548 -9.91717 -8.91878 -7.87137 -5.22111 -0.48041 -0.14075 1.45947 1.46641 1.56608 1.67290 1.90067 2.43402 2.47847 2.65582 3.25013 3.31916 3.35363 3.46860 3.54571 3.83714 3.86132 3.89209 3.92677 3.98983 4.14899 4.25067 4.39517 4.41623 4.45474 4.57596 4.61914 4.68298 4.79679 4.82733 4.87736 4.93376 4.97729 5.07539 5.19590 5.21615 5.31676 5.36455 5.41891 5.47121 5.51901 5.69830 6.16832 6.33810 6.54719 6.81057 6.91622 6.99409 7.08462 7.75025 8.39018 9.23284 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.002435 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.883919 B =11497.149741 C =12910.526700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C 0.150 3.850 4 C -0.130 4.130 5 C -0.074 4.074 6 C 0.558 3.442 7 O -0.564 6.564 8 N -0.707 5.707 9 C 0.155 3.845 10 C -0.093 4.093 11 H 0.110 0.890 12 C 0.141 3.859 13 N -0.625 5.625 14 C -0.238 4.238 15 H 0.083 0.917 16 C -0.067 4.067 17 N -0.952 5.952 18 Si 0.977 3.023 19 H -0.265 1.265 20 H -0.291 1.291 21 H -0.296 1.296 22 C 0.159 3.841 23 C 0.095 3.905 24 H 0.087 0.913 25 O -0.571 6.571 26 C -0.157 4.157 27 C 0.310 3.690 28 O -0.486 6.486 29 N -0.502 5.502 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.157 0.843 36 H 0.413 0.587 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.013 0.987 41 H 0.247 0.753 42 H 0.023 0.977 43 H 0.014 0.986 44 H 0.391 0.609 45 H 0.165 0.835 46 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.565 -17.607 -3.478 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C 0.012 3.988 4 C -0.151 4.151 5 C -0.085 4.085 6 C 0.345 3.655 7 O -0.443 6.443 8 N -0.358 5.358 9 C 0.032 3.968 10 C -0.113 4.113 11 H 0.128 0.872 12 C 0.016 3.984 13 N -0.351 5.351 14 C -0.367 4.367 15 H 0.101 0.899 16 C -0.260 4.260 17 N -0.601 5.601 18 Si 0.806 3.194 19 H -0.190 1.190 20 H -0.218 1.218 21 H -0.223 1.223 22 C 0.034 3.966 23 C 0.035 3.965 24 H 0.105 0.895 25 O -0.378 6.378 26 C -0.179 4.179 27 C 0.131 3.869 28 O -0.297 6.297 29 N -0.223 5.223 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.174 0.826 36 H 0.250 0.750 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.031 0.969 41 H 0.056 0.944 42 H 0.041 0.959 43 H 0.032 0.968 44 H 0.241 0.759 45 H 0.182 0.818 46 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -16.479 -18.389 -3.597 24.953 hybrid contribution 1.957 2.089 -0.175 2.868 sum -14.522 -16.300 -3.772 22.154 Atomic orbital electron populations 1.21658 0.93762 1.02819 1.01706 1.20675 0.97225 0.88204 1.05044 1.21408 0.92019 0.96791 0.88576 1.22276 0.97393 0.95421 0.99995 1.20201 0.97670 0.95291 0.95369 1.18323 0.80631 0.82087 0.84480 1.90772 1.58984 1.56136 1.38458 1.45907 1.46773 1.11542 1.31600 1.20952 0.92275 0.92808 0.90807 1.22586 0.98237 0.95284 0.95158 0.87211 1.21721 0.92802 0.87434 0.96405 1.44702 1.65381 1.21942 1.03068 1.19491 1.28107 1.00531 0.88612 0.89870 1.25623 1.02059 0.99742 0.98570 1.70144 1.49060 1.24338 1.16547 0.85024 0.77227 0.78379 0.78786 1.18956 1.21811 1.22281 1.21690 0.96864 0.94357 0.83733 1.22961 0.90410 0.88031 0.95068 0.89538 1.86368 1.52082 1.38746 1.60645 1.22442 0.97658 1.02309 0.95451 1.19078 0.90622 0.86470 0.90738 1.84766 1.55660 1.60956 1.28312 1.66850 1.24858 1.04154 1.26407 0.93457 0.92991 0.90221 0.88606 0.87937 0.82569 0.74977 0.92071 0.90724 0.92862 0.96884 0.94404 0.95861 0.96803 0.75938 0.81780 0.71563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.77 71.98 0.70 -1.02 16 2 C -0.07 -0.89 6.33 29.85 0.19 -0.70 16 3 C 0.15 2.71 6.18 42.50 0.26 2.97 16 4 C -0.13 -2.55 9.27 22.63 0.21 -2.34 16 5 C -0.07 -1.59 5.91 -19.90 -0.12 -1.70 16 6 C 0.56 14.42 7.80 86.88 0.68 15.10 16 7 O -0.56 -18.47 16.44 -3.76 -0.06 -18.54 16 8 N -0.71 -16.49 5.46 -465.69 -2.54 -19.03 16 9 C 0.16 4.29 4.61 86.38 0.40 4.69 16 10 C -0.09 -2.83 2.98 -9.40 -0.03 -2.86 16 11 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 12 C 0.14 5.40 6.64 86.85 0.58 5.98 16 13 N -0.62 -30.75 3.39 -691.98 -2.35 -33.10 16 14 C -0.24 -12.95 10.28 84.03 0.86 -12.09 16 15 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 16 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 17 N -0.95 -55.64 10.31 21.65 0.22 -55.42 16 18 Si 0.98 44.78 29.55 68.60 2.03 46.81 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 21 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 22 C 0.16 7.38 5.14 86.73 0.45 7.83 16 23 C 0.10 3.23 4.08 31.78 0.13 3.36 16 24 H 0.09 2.48 8.14 -2.39 -0.02 2.47 16 25 O -0.57 -18.62 12.26 -148.98 -1.83 -20.45 16 26 C -0.16 -2.83 9.55 22.75 0.22 -2.61 16 27 C 0.31 5.95 7.74 84.78 0.66 6.61 16 28 O -0.49 -7.85 13.56 -90.09 -1.22 -9.07 16 29 N -0.50 -10.33 9.87 -297.15 -2.93 -13.26 16 30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.05 0.78 7.94 -2.38 -0.02 0.77 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.10 0.87 7.86 -2.39 -0.02 0.85 16 35 H 0.16 2.85 7.62 -2.91 -0.02 2.83 16 36 H 0.41 7.65 6.61 -92.70 -0.61 7.04 16 37 H 0.06 2.00 7.56 -2.39 -0.02 1.98 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.01 0.55 7.91 -2.38 -0.02 0.53 16 41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.02 1.20 7.38 -2.39 -0.02 1.19 16 43 H 0.01 0.73 7.43 -2.39 -0.02 0.71 16 44 H 0.39 10.13 9.12 -74.06 -0.68 9.46 16 45 H 0.16 2.24 6.53 -2.91 -0.02 2.22 16 46 H 0.42 2.68 9.06 -74.05 -0.67 2.01 16 Total: -1.00 -75.78 382.07 -3.95 -79.73 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.92 Total: 22.38 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 5.65 Total: 19.93 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -7.60 Total: -120.81 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -3.11 Total: -48.05 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -75.78 -3.95 -79.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958267371.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.081 kcal (2) G-P(sol) polarization free energy of solvation -75.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds