Wall clock time and date at job start Tue Mar 31 2020 20:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50707 * 109.47217 * 2 1 4 4 C 1.38350 * 120.26865 * 89.99711 * 3 2 1 5 5 N 1.31886 * 121.18454 * 180.02562 * 4 3 2 6 6 C 1.32230 * 121.80048 * 359.97438 * 5 4 3 7 7 O 1.35426 * 119.80418 * 180.02562 * 6 5 4 8 8 C 1.40283 * 120.39865 * 359.97438 * 6 5 4 9 9 C 1.47533 * 120.59536 * 179.72156 * 8 6 5 10 10 O 1.21592 * 119.99729 * 0.02562 * 9 8 6 11 11 N 1.34770 * 119.99866 * 179.97438 * 9 8 6 12 12 C 1.46502 * 119.99817 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47153 * 179.97438 * 12 11 9 14 14 H 1.08994 * 110.88991 * 302.57804 * 13 12 11 15 15 C 1.54915 * 111.00228 * 66.45288 * 13 12 11 16 16 N 1.47423 * 104.83230 * 155.08337 * 15 13 12 17 17 C 1.36938 * 125.64996 * 155.83934 * 16 15 13 18 18 H 1.07995 * 119.99485 * 353.89068 * 17 16 15 19 19 C 1.38810 * 119.99867 * 173.89315 * 17 16 15 20 20 N 1.31616 * 120.00423 * 6.82232 * 19 17 16 21 21 Si 1.86802 * 119.99801 * 186.82898 * 19 17 16 22 22 H 1.48495 * 109.47202 * 94.97970 * 21 19 17 23 23 H 1.48501 * 109.47058 * 214.98635 * 21 19 17 24 24 H 1.48502 * 109.46808 * 334.98166 * 21 19 17 25 25 C 1.47026 * 108.70168 * 335.87589 * 16 15 13 26 26 C 1.54323 * 107.27423 * 1.05578 * 25 16 15 27 27 H 1.08999 * 110.72138 * 263.83287 * 26 25 16 28 28 O 1.42896 * 110.72011 * 140.55726 * 26 25 16 29 29 C 1.38332 * 120.26942 * 269.96175 * 3 2 1 30 30 H 1.09006 * 109.47692 * 59.99991 * 1 2 3 31 31 H 1.09003 * 109.47401 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47434 * 299.99892 * 1 2 3 33 33 H 1.09007 * 109.47175 * 240.00151 * 2 1 3 34 34 H 1.08996 * 109.47265 * 120.00286 * 2 1 3 35 35 H 1.08000 * 119.41152 * 359.97438 * 4 3 2 36 36 H 0.96702 * 114.00117 * 269.98418 * 7 6 5 37 37 H 0.97000 * 120.00154 * 0.02562 * 11 9 8 38 38 H 1.08994 * 109.47067 * 299.99771 * 12 11 9 39 39 H 1.08997 * 109.47018 * 60.00539 * 12 11 9 40 40 H 1.08996 * 110.36923 * 273.92466 * 15 13 12 41 41 H 1.09009 * 110.36382 * 36.24657 * 15 13 12 42 42 H 0.96997 * 120.00396 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.88646 * 120.47800 * 25 16 15 44 44 H 1.09000 * 109.87993 * 241.48630 * 25 16 15 45 45 H 0.96695 * 114.00385 * 66.48331 * 28 26 25 46 46 H 1.08003 * 120.82634 * 0.03660 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2647 2.0784 1.1949 5 7 2.7038 3.3218 1.2160 6 6 2.9421 3.9956 0.1034 7 8 3.3929 5.2707 0.1722 8 6 2.7317 3.3971 -1.1478 9 6 2.9903 4.1469 -2.3918 10 8 3.3899 5.2940 -2.3383 11 7 2.7845 3.5600 -3.5874 12 6 3.0419 4.3044 -4.8227 13 6 2.7315 3.4148 -6.0283 14 1 3.3217 2.4990 -5.9977 15 6 1.2174 3.0970 -6.1086 16 7 0.9682 2.8049 -7.5320 17 6 -0.0593 2.0442 -8.0226 18 1 -0.7144 1.5191 -7.3433 19 6 -0.2588 1.9480 -9.3929 20 7 0.6152 2.4753 -10.2238 21 14 -1.7677 1.0702 -10.0578 22 1 -2.8384 2.0627 -10.3289 23 1 -1.4158 0.3652 -11.3165 24 1 -2.2484 0.0847 -9.0562 25 6 2.0060 3.4650 -8.3375 26 6 2.9601 4.1807 -7.3581 27 1 2.6863 5.2302 -7.2506 28 8 4.3165 4.0521 -7.7889 29 6 2.2655 2.0780 -1.1947 30 1 -0.3635 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.0825 1.5645 2.1272 36 1 2.6910 5.9356 0.1920 37 1 2.4661 2.6448 -3.6300 38 1 2.4078 5.1904 -4.8517 39 1 4.0889 4.6056 -4.8539 40 1 0.9792 2.2278 -5.4956 41 1 0.6314 3.9592 -5.7900 42 1 0.4757 2.4084 -11.1814 43 1 2.5562 2.7218 -8.9145 44 1 1.5480 4.1909 -9.0093 45 1 4.5119 4.5130 -8.6162 46 1 2.0915 1.5858 -2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958549288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:31 Heat of formation + Delta-G solvation = -68.042900 kcal Electronic energy + Delta-G solvation = -28835.945826 eV Core-core repulsion = 24726.541530 eV Total energy + Delta-G solvation = -4109.404296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15237 -39.34236 -38.21192 -37.53397 -35.20930 -34.69609 -34.57629 -32.95123 -32.00897 -29.76734 -29.35993 -27.63746 -25.86360 -24.89316 -24.35889 -23.53903 -22.05320 -20.80514 -20.25513 -19.86292 -19.07258 -17.65595 -17.52623 -16.97028 -16.64100 -16.28528 -15.64941 -15.34119 -15.03417 -14.84906 -14.61369 -14.31411 -14.08795 -14.04469 -13.84004 -13.37200 -13.18580 -12.99519 -12.71200 -12.54051 -12.49172 -12.08340 -12.05588 -11.73790 -11.55584 -11.40272 -11.28029 -11.04848 -10.87657 -10.64965 -10.31562 -10.21907 -10.10497 -9.95571 -9.86253 -9.61421 -9.26459 -9.17168 -8.96101 -8.69439 -6.96097 -5.82951 -3.16825 0.28511 0.73551 2.68802 3.00366 3.26965 3.33546 3.38625 3.40967 3.54501 4.16328 4.28883 4.37693 4.40044 4.45409 4.67099 4.76283 4.90947 4.95399 4.96766 5.11210 5.16191 5.29523 5.36883 5.39854 5.43165 5.48158 5.57440 5.62076 5.80410 5.83770 5.84832 5.95850 5.98596 6.07336 6.14302 6.28699 6.33869 6.47082 6.74838 7.25759 7.34292 7.42147 7.43001 7.54315 7.68718 8.12762 8.13086 8.14986 9.09108 9.70034 10.34574 11.28963 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.002914 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.013627 B = 9605.992327 C =11483.976440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 C -0.152 4.152 4 C 0.148 3.852 5 N -0.506 5.506 6 C 0.363 3.637 7 O -0.460 6.460 8 C -0.197 4.197 9 C 0.560 3.440 10 O -0.522 6.522 11 N -0.719 5.719 12 C 0.135 3.865 13 C -0.109 4.109 14 H 0.089 0.911 15 C 0.142 3.858 16 N -0.602 5.602 17 C -0.233 4.233 18 H 0.080 0.920 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.912 3.088 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.151 3.849 26 C 0.084 3.916 27 H 0.057 0.943 28 O -0.566 6.566 29 C -0.027 4.027 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.164 0.836 36 H 0.405 0.595 37 H 0.399 0.601 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.024 0.976 42 H 0.253 0.747 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.377 0.623 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.537 -1.656 19.510 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.154 4.154 4 C -0.010 4.010 5 N -0.224 5.224 6 C 0.183 3.817 7 O -0.268 6.268 8 C -0.204 4.204 9 C 0.345 3.655 10 O -0.399 6.399 11 N -0.371 5.371 12 C 0.011 3.989 13 C -0.129 4.129 14 H 0.108 0.892 15 C 0.016 3.984 16 N -0.329 5.329 17 C -0.361 4.361 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.566 5.566 21 Si 0.743 3.257 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.025 3.975 26 C 0.024 3.976 27 H 0.075 0.925 28 O -0.371 6.371 29 C -0.053 4.053 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.181 0.819 36 H 0.265 0.735 37 H 0.234 0.766 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.223 0.777 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.502 -0.992 20.608 20.927 hybrid contribution -1.558 -0.730 -1.817 2.502 sum 1.944 -1.722 18.791 18.970 Atomic orbital electron populations 1.21792 0.94195 1.02323 1.02479 1.20493 0.96520 0.90977 1.03748 1.20879 1.02375 0.98563 0.93581 1.22647 0.91644 0.88782 0.97889 1.67339 1.13797 1.09824 1.31405 1.19170 0.89081 0.87152 0.86284 1.84718 1.35092 1.11632 1.95310 1.21183 1.07598 0.96666 0.94921 1.17788 0.78365 0.86409 0.82896 1.90816 1.44931 1.17049 1.87056 1.45937 1.67914 1.17571 1.05639 1.21402 1.01559 0.94544 0.81357 1.22624 0.98907 0.99025 0.92314 0.89240 1.21599 0.90813 0.97706 0.88324 1.44301 1.30190 1.59008 0.99419 1.19055 1.04415 1.21968 0.90701 0.90259 1.24838 0.98702 1.00776 0.95883 1.69950 1.34880 1.49826 1.01964 0.86098 0.82418 0.78806 0.78427 1.21532 1.21697 1.20573 1.21845 0.88507 0.95884 0.91232 1.23107 0.82507 0.97671 0.94360 0.92461 1.86420 1.27797 1.78123 1.44797 1.21690 0.92321 0.92173 0.99139 0.92209 0.91877 0.92481 0.90253 0.90337 0.81921 0.73537 0.76565 0.91166 0.90954 0.94138 0.95839 0.93622 0.92771 0.93264 0.77656 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.15 0.37 -0.47 16 2 C -0.08 -0.44 6.08 -27.88 -0.17 -0.60 16 3 C -0.15 -1.18 5.14 -104.54 -0.54 -1.72 16 4 C 0.15 1.26 10.84 -17.49 -0.19 1.07 16 5 N -0.51 -5.80 10.37 -12.98 -0.13 -5.93 16 6 C 0.36 4.52 7.77 -16.61 -0.13 4.39 16 7 O -0.46 -5.85 11.66 -39.74 -0.46 -6.31 16 8 C -0.20 -2.33 5.90 -104.68 -0.62 -2.95 16 9 C 0.56 7.82 7.77 -12.47 -0.10 7.72 16 10 O -0.52 -8.89 15.19 -16.49 -0.25 -9.14 16 11 N -0.72 -9.19 5.36 -61.35 -0.33 -9.52 16 12 C 0.13 1.96 5.12 -4.04 -0.02 1.94 16 13 C -0.11 -1.81 2.83 -88.47 -0.25 -2.06 16 14 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 15 C 0.14 2.69 6.41 -2.53 -0.02 2.67 16 16 N -0.60 -14.63 3.39 -170.07 -0.58 -15.21 16 17 C -0.23 -6.25 10.26 -15.06 -0.15 -6.40 16 18 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 19 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 20 N -0.92 -26.16 10.36 55.49 0.57 -25.58 16 21 Si 0.91 21.39 29.56 -169.99 -5.02 16.36 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.15 3.49 5.16 -3.06 -0.02 3.47 16 26 C 0.08 1.51 3.80 -24.90 -0.09 1.42 16 27 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 28 O -0.57 -9.62 13.39 -35.23 -0.47 -10.09 16 29 C -0.03 -0.25 9.31 -38.89 -0.36 -0.61 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.41 8.09 -51.92 -0.42 -0.01 16 34 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 35 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.40 3.48 9.06 45.56 0.41 3.89 16 37 H 0.40 4.28 6.44 -40.82 -0.26 4.01 16 38 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.02 0.45 8.00 -51.92 -0.42 0.04 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.05 1.42 7.46 -51.93 -0.39 1.03 16 44 H 0.05 1.26 7.36 -51.93 -0.38 0.87 16 45 H 0.38 4.94 9.12 45.56 0.42 5.36 16 46 H 0.14 1.03 6.52 -52.48 -0.34 0.69 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -34.87 381.71 -8.45 -43.32 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.15 Total: 8.71 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -2.38 Total: 7.63 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.47 Total: -56.24 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -1.19 Total: -25.54 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.87 -8.45 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958549288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.719 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds