Wall clock time and date at job start Tue Mar 31 2020 20:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 109.47299 * 2 1 4 4 C 1.38350 * 120.27043 * 89.99686 * 3 2 1 5 5 N 1.31880 * 121.18961 * 180.02562 * 4 3 2 6 6 C 1.32240 * 121.79572 * 0.02562 * 5 4 3 7 7 O 1.35427 * 119.79805 * 179.97438 * 6 5 4 8 8 C 1.40279 * 120.39970 * 359.97438 * 6 5 4 9 9 C 1.47523 * 120.59766 * 179.97438 * 8 6 5 10 10 O 1.21590 * 120.00029 * 359.97438 * 9 8 6 11 11 N 1.34782 * 120.00238 * 180.02562 * 9 8 6 12 12 C 1.46497 * 119.99950 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47137 * 179.97438 * 12 11 9 14 14 H 1.09004 * 110.88288 * 57.42437 * 13 12 11 15 15 C 1.54905 * 111.00334 * 293.54982 * 13 12 11 16 16 N 1.47425 * 104.83192 * 204.87674 * 15 13 12 17 17 C 1.36936 * 125.64932 * 204.08983 * 16 15 13 18 18 H 1.07997 * 120.00015 * 26.01017 * 17 16 15 19 19 C 1.38810 * 119.99782 * 206.00870 * 17 16 15 20 20 N 1.31628 * 119.99789 * 214.47366 * 19 17 16 21 21 Si 1.86792 * 120.00337 * 34.48312 * 19 17 16 22 22 H 1.48500 * 109.47151 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47142 * 239.99823 * 21 19 17 24 24 H 1.48508 * 109.47417 * 119.99705 * 21 19 17 25 25 C 1.47024 * 108.70208 * 24.35539 * 16 15 13 26 26 C 1.54338 * 107.26406 * 358.58720 * 25 16 15 27 27 H 1.08993 * 110.51632 * 96.45399 * 26 25 16 28 28 O 1.42903 * 110.99933 * 219.60129 * 26 25 16 29 29 C 1.38337 * 120.26972 * 270.28211 * 3 2 1 30 30 H 1.08998 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47005 * 300.00234 * 1 2 3 32 32 H 1.08999 * 109.46917 * 60.00271 * 1 2 3 33 33 H 1.08999 * 109.47421 * 239.99817 * 2 1 3 34 34 H 1.09000 * 109.47428 * 119.99853 * 2 1 3 35 35 H 1.08006 * 119.40952 * 0.05042 * 4 3 2 36 36 H 0.96705 * 113.99626 * 270.01392 * 7 6 5 37 37 H 0.97000 * 119.99829 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.47058 * 60.00301 * 12 11 9 39 39 H 1.09003 * 109.47227 * 300.00185 * 12 11 9 40 40 H 1.08996 * 110.37003 * 86.03608 * 15 13 12 41 41 H 1.09008 * 110.46088 * 323.75973 * 15 13 12 42 42 H 0.97000 * 119.99944 * 5.09675 * 20 19 17 43 43 H 1.08994 * 109.88192 * 118.13329 * 25 16 15 44 44 H 1.08998 * 109.88047 * 239.29799 * 25 16 15 45 45 H 0.96697 * 114.00240 * 293.78166 * 28 26 25 46 46 H 1.08002 * 120.82474 * 359.97286 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2648 2.0784 1.1949 5 7 2.7039 3.3218 1.2160 6 6 2.9413 3.9959 0.1034 7 8 3.3912 5.2714 0.1723 8 6 2.7298 3.3978 -1.1478 9 6 2.9926 4.1460 -2.3917 10 8 3.3958 5.2919 -2.3383 11 7 2.7848 3.5598 -3.5875 12 6 3.0453 4.3031 -4.8227 13 6 2.7317 3.4146 -6.0283 14 1 1.6994 3.0662 -5.9961 15 6 3.7176 2.2227 -6.1110 16 7 3.7275 1.8391 -7.5344 17 6 4.0573 0.6043 -8.0260 18 1 3.9333 -0.2733 -7.4089 19 6 4.5509 0.4807 -9.3175 20 7 4.2521 -0.5799 -10.0375 21 14 5.6393 1.8192 -10.0336 22 1 5.8234 2.8976 -9.0293 23 1 4.9984 2.3804 -11.2499 24 1 6.9611 1.2442 -10.3910 25 6 3.3307 3.0038 -8.3393 26 6 3.0273 4.1563 -7.3586 27 1 3.8956 4.8066 -7.2530 28 8 1.8866 4.9043 -7.7846 29 6 2.2593 2.0803 -1.1948 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0838 1.5641 2.1272 36 1 2.6887 5.9357 0.1929 37 1 2.4621 2.6461 -3.6301 38 1 4.0935 4.6002 -4.8538 39 1 2.4147 5.1917 -4.8520 40 1 3.3637 1.3943 -5.4973 41 1 4.7143 2.5299 -5.7940 42 1 3.6284 -1.2389 -9.6945 43 1 4.1440 3.2872 -9.0072 44 1 2.4379 2.7675 -8.9182 45 1 2.0193 5.3867 -8.6121 46 1 2.0813 1.5895 -2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958549290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:36 Heat of formation + Delta-G solvation = -65.956530 kcal Electronic energy + Delta-G solvation = -28881.310851 eV Core-core repulsion = 24771.997027 eV Total energy + Delta-G solvation = -4109.313824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19334 -39.44725 -38.45478 -37.58261 -35.43976 -34.81743 -34.61419 -33.01288 -32.23381 -30.20242 -29.44391 -27.87645 -26.10182 -24.83716 -24.39601 -23.24723 -22.03303 -21.00243 -20.36776 -20.04429 -19.11888 -17.78035 -17.61092 -17.46798 -17.01473 -16.35593 -15.72437 -15.43790 -15.32681 -14.89597 -14.67279 -14.55617 -14.30318 -14.02199 -13.79293 -13.47496 -13.34296 -13.05091 -12.94572 -12.84248 -12.58103 -12.41712 -12.14634 -12.11943 -11.77663 -11.44531 -11.40340 -11.07756 -10.99311 -10.70494 -10.47537 -10.28641 -10.25200 -9.90297 -9.68332 -9.48842 -9.34742 -9.22433 -9.02663 -8.43836 -7.10329 -6.48181 -3.36062 0.24783 0.70295 2.64002 2.93123 3.22644 3.39525 3.47542 3.50319 3.60343 4.12518 4.24996 4.34720 4.37078 4.43034 4.55043 4.67479 4.73812 4.87767 4.91701 4.93538 5.03472 5.07912 5.25638 5.27011 5.36471 5.39335 5.44105 5.54313 5.55053 5.62296 5.76798 5.78472 5.82499 5.96437 6.03872 6.07951 6.26756 6.34528 6.44749 6.62539 6.66483 7.21792 7.35460 7.50736 7.75948 7.82977 8.06558 8.27607 8.88462 9.47954 10.20330 10.94603 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.002863 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.323941 B = 9776.307989 C =10980.573313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.151 4.151 4 C 0.149 3.851 5 N -0.505 5.505 6 C 0.363 3.637 7 O -0.459 6.459 8 C -0.198 4.198 9 C 0.561 3.439 10 O -0.521 6.521 11 N -0.719 5.719 12 C 0.135 3.865 13 C -0.107 4.107 14 H 0.092 0.908 15 C 0.133 3.867 16 N -0.598 5.598 17 C -0.346 4.346 18 H 0.070 0.930 19 C 0.003 3.997 20 N -0.897 5.897 21 Si 1.034 2.966 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.295 1.295 25 C 0.095 3.905 26 C 0.099 3.901 27 H 0.065 0.935 28 O -0.562 6.562 29 C -0.027 4.027 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.164 0.836 36 H 0.404 0.596 37 H 0.400 0.600 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.026 0.974 42 H 0.268 0.732 43 H 0.034 0.966 44 H 0.046 0.954 45 H 0.377 0.623 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.290 5.990 19.620 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.154 4.154 4 C -0.009 4.009 5 N -0.223 5.223 6 C 0.183 3.817 7 O -0.267 6.267 8 C -0.204 4.204 9 C 0.347 3.653 10 O -0.398 6.398 11 N -0.371 5.371 12 C 0.011 3.989 13 C -0.127 4.127 14 H 0.110 0.890 15 C 0.008 3.992 16 N -0.326 5.326 17 C -0.473 4.473 18 H 0.088 0.912 19 C -0.201 4.201 20 N -0.533 5.533 21 Si 0.864 3.136 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.223 1.223 25 C -0.030 4.030 26 C 0.039 3.961 27 H 0.083 0.917 28 O -0.367 6.367 29 C -0.053 4.053 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.181 0.819 36 H 0.264 0.736 37 H 0.235 0.765 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.224 0.776 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.615 7.110 19.585 21.861 hybrid contribution -1.180 -0.831 -0.093 1.446 sum -7.795 6.279 19.492 21.911 Atomic orbital electron populations 1.21785 0.94267 1.02308 1.02338 1.20503 0.96441 0.90996 1.03907 1.20883 1.02392 0.98506 0.93569 1.22656 0.91562 0.88766 0.97907 1.67346 1.13762 1.09851 1.31373 1.19170 0.89059 0.87151 0.86279 1.84729 1.35036 1.11610 1.95310 1.21156 1.07658 0.96742 0.94866 1.17785 0.78328 0.86363 0.82873 1.90817 1.44771 1.17122 1.87050 1.45905 1.67928 1.17738 1.05580 1.21369 1.01651 0.94483 0.81357 1.22609 1.01870 0.96222 0.91973 0.88963 1.21720 0.95149 0.93298 0.89068 1.44534 1.79304 1.08974 0.99785 1.19795 1.44589 0.82406 1.00465 0.91220 1.26056 0.99206 1.01418 0.93413 1.70864 1.33648 1.13167 1.35661 0.84311 0.77840 0.76164 0.75260 1.20631 1.21953 1.22292 1.22304 0.98576 0.87831 0.94310 1.22736 0.87563 0.91967 0.93835 0.91670 1.86469 1.38714 1.66626 1.44927 1.21686 0.92358 0.92123 0.99143 0.91854 0.92480 0.92371 0.90168 0.90248 0.81879 0.73602 0.76507 0.91058 0.90837 0.93670 0.95595 0.92151 0.94880 0.93587 0.77554 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.90 37.16 0.37 -0.41 16 2 C -0.08 -0.44 6.08 -27.88 -0.17 -0.61 16 3 C -0.15 -1.17 5.14 -104.54 -0.54 -1.71 16 4 C 0.15 1.25 10.84 -17.49 -0.19 1.06 16 5 N -0.51 -5.73 10.37 -12.98 -0.13 -5.86 16 6 C 0.36 4.46 7.77 -16.61 -0.13 4.33 16 7 O -0.46 -5.74 11.66 -39.74 -0.46 -6.20 16 8 C -0.20 -2.29 5.90 -104.69 -0.62 -2.91 16 9 C 0.56 7.63 7.77 -12.47 -0.10 7.53 16 10 O -0.52 -8.65 15.19 -16.48 -0.25 -8.90 16 11 N -0.72 -8.86 5.36 -61.35 -0.33 -9.19 16 12 C 0.13 1.86 5.13 -4.04 -0.02 1.84 16 13 C -0.11 -1.67 2.83 -88.47 -0.25 -1.92 16 14 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 15 C 0.13 2.50 6.40 -2.53 -0.02 2.48 16 16 N -0.60 -14.05 3.06 -170.07 -0.52 -14.57 16 17 C -0.35 -9.53 10.24 -15.06 -0.15 -9.68 16 18 H 0.07 2.03 8.06 -52.49 -0.42 1.60 16 19 C 0.00 0.09 5.29 -17.43 -0.09 0.00 16 20 N -0.90 -26.97 13.70 55.49 0.76 -26.21 16 21 Si 1.03 25.29 26.22 -169.99 -4.46 20.84 16 22 H -0.28 -6.43 6.16 56.52 0.35 -6.09 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 25 C 0.10 1.99 5.82 -3.06 -0.02 1.97 16 26 C 0.10 1.62 3.78 -24.89 -0.09 1.53 16 27 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 28 O -0.56 -8.29 13.40 -35.23 -0.47 -8.76 16 29 C -0.03 -0.24 9.31 -38.89 -0.36 -0.60 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 35 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.40 3.31 9.06 45.56 0.41 3.72 16 37 H 0.40 4.14 6.44 -40.82 -0.26 3.88 16 38 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.50 8.01 -51.92 -0.42 0.08 16 42 H 0.27 7.97 8.73 -40.82 -0.36 7.61 16 43 H 0.03 0.72 3.83 -51.93 -0.20 0.52 16 44 H 0.05 1.01 8.06 -51.93 -0.42 0.60 16 45 H 0.38 3.97 9.12 45.56 0.42 4.38 16 46 H 0.14 1.01 6.52 -52.49 -0.34 0.67 16 LS Contribution 378.61 15.07 5.71 5.71 Total: -1.00 -35.87 378.61 -7.62 -43.49 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.08 Total: 6.78 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -2.38 Total: 2.90 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.22 Total: -55.84 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -1.19 Total: -23.87 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -4.46 Total: 20.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.87 -7.62 -43.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958549290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.469 kcal (2) G-P(sol) polarization free energy of solvation -35.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds