Wall clock time and date at job start Tue Mar 31 2020 20:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 109.47299 * 2 1 4 4 C 1.38350 * 120.27043 * 89.99686 * 3 2 1 5 5 N 1.31880 * 121.18961 * 180.02562 * 4 3 2 6 6 C 1.32240 * 121.79572 * 0.02562 * 5 4 3 7 7 O 1.35427 * 119.79805 * 179.97438 * 6 5 4 8 8 C 1.40279 * 120.39970 * 359.97438 * 6 5 4 9 9 C 1.47523 * 120.59766 * 179.97438 * 8 6 5 10 10 O 1.21590 * 120.00029 * 359.97438 * 9 8 6 11 11 N 1.34782 * 120.00238 * 180.02562 * 9 8 6 12 12 C 1.46497 * 119.99950 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47137 * 179.97438 * 12 11 9 14 14 H 1.09004 * 110.88288 * 57.42437 * 13 12 11 15 15 C 1.54905 * 111.00334 * 293.54982 * 13 12 11 16 16 N 1.47425 * 104.83192 * 204.87674 * 15 13 12 17 17 C 1.36936 * 125.64932 * 204.08983 * 16 15 13 18 18 H 1.07997 * 120.00015 * 26.01017 * 17 16 15 19 19 C 1.38810 * 119.99782 * 206.00870 * 17 16 15 20 20 N 1.31628 * 119.99789 * 214.47366 * 19 17 16 21 21 Si 1.86792 * 120.00337 * 34.48312 * 19 17 16 22 22 H 1.48500 * 109.47151 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47142 * 239.99823 * 21 19 17 24 24 H 1.48508 * 109.47417 * 119.99705 * 21 19 17 25 25 C 1.47024 * 108.70208 * 24.35539 * 16 15 13 26 26 C 1.54338 * 107.26406 * 358.58720 * 25 16 15 27 27 H 1.08993 * 110.51632 * 96.45399 * 26 25 16 28 28 O 1.42903 * 110.99933 * 219.60129 * 26 25 16 29 29 C 1.38337 * 120.26972 * 270.28211 * 3 2 1 30 30 H 1.08998 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47005 * 300.00234 * 1 2 3 32 32 H 1.08999 * 109.46917 * 60.00271 * 1 2 3 33 33 H 1.08999 * 109.47421 * 239.99817 * 2 1 3 34 34 H 1.09000 * 109.47428 * 119.99853 * 2 1 3 35 35 H 1.08006 * 119.40952 * 0.05042 * 4 3 2 36 36 H 0.96705 * 113.99626 * 270.01392 * 7 6 5 37 37 H 0.97000 * 119.99829 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.47058 * 60.00301 * 12 11 9 39 39 H 1.09003 * 109.47227 * 300.00185 * 12 11 9 40 40 H 1.08996 * 110.37003 * 86.03608 * 15 13 12 41 41 H 1.09008 * 110.46088 * 323.75973 * 15 13 12 42 42 H 0.97000 * 119.99944 * 5.09675 * 20 19 17 43 43 H 1.08994 * 109.88192 * 118.13329 * 25 16 15 44 44 H 1.08998 * 109.88047 * 239.29799 * 25 16 15 45 45 H 0.96697 * 114.00240 * 293.78166 * 28 26 25 46 46 H 1.08002 * 120.82474 * 359.97286 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2648 2.0784 1.1949 5 7 2.7039 3.3218 1.2160 6 6 2.9413 3.9959 0.1034 7 8 3.3912 5.2714 0.1723 8 6 2.7298 3.3978 -1.1478 9 6 2.9926 4.1460 -2.3917 10 8 3.3958 5.2919 -2.3383 11 7 2.7848 3.5598 -3.5875 12 6 3.0453 4.3031 -4.8227 13 6 2.7317 3.4146 -6.0283 14 1 1.6994 3.0662 -5.9961 15 6 3.7176 2.2227 -6.1110 16 7 3.7275 1.8391 -7.5344 17 6 4.0573 0.6043 -8.0260 18 1 3.9333 -0.2733 -7.4089 19 6 4.5509 0.4807 -9.3175 20 7 4.2521 -0.5799 -10.0375 21 14 5.6393 1.8192 -10.0336 22 1 5.8234 2.8976 -9.0293 23 1 4.9984 2.3804 -11.2499 24 1 6.9611 1.2442 -10.3910 25 6 3.3307 3.0038 -8.3393 26 6 3.0273 4.1563 -7.3586 27 1 3.8956 4.8066 -7.2530 28 8 1.8866 4.9043 -7.7846 29 6 2.2593 2.0803 -1.1948 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0838 1.5641 2.1272 36 1 2.6887 5.9357 0.1929 37 1 2.4621 2.6461 -3.6301 38 1 4.0935 4.6002 -4.8538 39 1 2.4147 5.1917 -4.8520 40 1 3.3637 1.3943 -5.4973 41 1 4.7143 2.5299 -5.7940 42 1 3.6284 -1.2389 -9.6945 43 1 4.1440 3.2872 -9.0072 44 1 2.4379 2.7675 -8.9182 45 1 2.0193 5.3867 -8.6121 46 1 2.0813 1.5895 -2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958549290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:35 Heat of formation + Delta-G solvation = -96.664143 kcal Electronic energy + Delta-G solvation = -28882.642433 eV Core-core repulsion = 24771.997027 eV Total energy + Delta-G solvation = -4110.645406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.01413 -40.56946 -39.73738 -38.40086 -36.76231 -36.15306 -35.22607 -34.43800 -33.54749 -31.64796 -30.09400 -29.41540 -27.50082 -25.87366 -25.04358 -24.60230 -22.88698 -22.48061 -21.66327 -21.21880 -19.95451 -19.64669 -18.65475 -18.40866 -18.16202 -17.22437 -16.97159 -16.72635 -16.53752 -16.11119 -15.68944 -15.49543 -15.41488 -14.97873 -14.76795 -14.71615 -14.57139 -14.41175 -14.18921 -13.88401 -13.74195 -13.63669 -13.13519 -13.01981 -12.82869 -12.78822 -12.50463 -12.36599 -12.23918 -11.99471 -11.85310 -11.65496 -11.32539 -11.17901 -11.03661 -10.96048 -10.54566 -10.48453 -10.22148 -9.81493 -9.09712 -8.66870 -5.50185 -0.53221 -0.01466 1.42680 1.51600 1.69082 1.72686 1.94000 2.45551 2.52766 2.70951 2.87539 3.11701 3.37741 3.42339 3.55188 3.64930 3.66434 3.70120 3.81487 4.03335 4.10152 4.24133 4.25614 4.28191 4.45220 4.48936 4.50972 4.64999 4.67103 4.80014 4.80493 4.81221 4.90360 4.92011 5.04440 5.16251 5.18768 5.30963 5.31318 5.35618 5.47390 5.70372 6.13956 6.34942 6.51339 6.76765 6.76899 6.83789 7.06003 7.45428 8.15804 8.74408 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.002863 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.323941 B = 9776.307989 C =10980.573313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.142 4.142 4 C 0.151 3.849 5 N -0.526 5.526 6 C 0.346 3.654 7 O -0.479 6.479 8 C -0.213 4.213 9 C 0.562 3.438 10 O -0.556 6.556 11 N -0.712 5.712 12 C 0.146 3.854 13 C -0.090 4.090 14 H 0.093 0.907 15 C 0.131 3.869 16 N -0.619 5.619 17 C -0.337 4.337 18 H 0.040 0.960 19 C -0.050 4.050 20 N -0.933 5.933 21 Si 1.079 2.921 22 H -0.256 1.256 23 H -0.284 1.284 24 H -0.297 1.297 25 C 0.088 3.912 26 C 0.112 3.888 27 H 0.086 0.914 28 O -0.564 6.564 29 C -0.026 4.026 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.196 0.804 36 H 0.416 0.584 37 H 0.410 0.590 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.030 0.970 42 H 0.256 0.744 43 H 0.031 0.969 44 H 0.029 0.971 45 H 0.397 0.603 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 6.787 20.957 23.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.144 4.144 4 C -0.006 4.006 5 N -0.245 5.245 6 C 0.167 3.833 7 O -0.289 6.289 8 C -0.220 4.220 9 C 0.349 3.651 10 O -0.436 6.436 11 N -0.364 5.364 12 C 0.022 3.978 13 C -0.109 4.109 14 H 0.111 0.889 15 C 0.007 3.993 16 N -0.347 5.347 17 C -0.466 4.466 18 H 0.058 0.942 19 C -0.248 4.248 20 N -0.573 5.573 21 Si 0.904 3.096 22 H -0.181 1.181 23 H -0.211 1.211 24 H -0.225 1.225 25 C -0.038 4.038 26 C 0.052 3.948 27 H 0.104 0.896 28 O -0.372 6.372 29 C -0.052 4.052 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.213 0.787 36 H 0.278 0.722 37 H 0.247 0.753 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.248 0.752 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.115 7.927 20.935 23.489 hybrid contribution -1.144 -1.179 -0.399 1.690 sum -8.258 6.748 20.537 23.141 Atomic orbital electron populations 1.21785 0.93928 1.02806 1.02148 1.20572 0.96568 0.89414 1.05014 1.21151 1.01059 0.99405 0.92826 1.23270 0.89919 0.87881 0.99565 1.67386 1.14743 1.11181 1.31145 1.19336 0.89924 0.87192 0.86895 1.84674 1.36361 1.12417 1.95421 1.21010 1.09565 0.97765 0.93659 1.18058 0.77501 0.86010 0.83544 1.90792 1.46545 1.18683 1.87564 1.45797 1.67573 1.18108 1.04954 1.21167 1.01448 0.94155 0.80983 1.22417 1.00863 0.95015 0.92643 0.88871 1.21853 0.96254 0.94873 0.86367 1.44606 1.79297 1.08516 1.02251 1.19680 1.43249 0.83577 1.00058 0.94200 1.27129 1.00351 1.02883 0.94468 1.70968 1.35289 1.14428 1.36600 0.83709 0.75878 0.74487 0.75523 1.18079 1.21094 1.22521 1.22464 0.97598 0.88537 0.95172 1.22566 0.88875 0.90892 0.92492 0.89611 1.86442 1.38003 1.66391 1.46374 1.21931 0.91512 0.91165 1.00573 0.91041 0.92092 0.93198 0.89920 0.88376 0.78691 0.72228 0.75323 0.91492 0.90440 0.93045 0.95256 0.93531 0.95175 0.95328 0.75223 0.82183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.90 71.98 0.71 -0.44 16 2 C -0.08 -0.62 6.08 29.85 0.18 -0.44 16 3 C -0.14 -1.85 5.14 -19.81 -0.10 -1.95 16 4 C 0.15 2.18 10.84 84.71 0.92 3.10 16 5 N -0.53 -11.34 10.37 -307.99 -3.19 -14.53 16 6 C 0.35 8.36 7.77 85.13 0.66 9.02 16 7 O -0.48 -12.15 11.66 -66.41 -0.77 -12.93 16 8 C -0.21 -4.76 5.90 -19.91 -0.12 -4.88 16 9 C 0.56 14.79 7.77 86.69 0.67 15.46 16 10 O -0.56 -18.31 15.19 16.82 0.26 -18.06 16 11 N -0.71 -16.31 5.36 -466.28 -2.50 -18.81 16 12 C 0.15 3.70 5.13 86.38 0.44 4.14 16 13 C -0.09 -2.58 2.83 -9.40 -0.03 -2.61 16 14 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 15 C 0.13 4.70 6.40 86.85 0.56 5.25 16 16 N -0.62 -28.55 3.06 -691.97 -2.12 -30.66 16 17 C -0.34 -18.82 10.24 84.03 0.86 -17.96 16 18 H 0.04 2.41 8.06 -2.91 -0.02 2.38 16 19 C -0.05 -2.88 5.29 84.86 0.45 -2.43 16 20 N -0.93 -57.62 13.70 21.65 0.30 -57.33 16 21 Si 1.08 50.90 26.22 68.60 1.80 52.70 16 22 H -0.26 -10.93 6.16 99.48 0.61 -10.32 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 25 C 0.09 3.51 5.82 86.73 0.50 4.02 16 26 C 0.11 3.36 3.78 31.79 0.12 3.48 16 27 H 0.09 2.29 8.04 -2.39 -0.02 2.27 16 28 O -0.56 -14.87 13.40 -148.98 -2.00 -16.86 16 29 C -0.03 -0.42 9.31 22.72 0.21 -0.21 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 34 H 0.10 0.46 8.09 -2.39 -0.02 0.44 16 35 H 0.20 1.40 8.06 -2.91 -0.02 1.37 16 36 H 0.42 7.12 9.06 -74.05 -0.67 6.45 16 37 H 0.41 7.65 6.44 -92.71 -0.60 7.05 16 38 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.03 1.06 8.01 -2.38 -0.02 1.04 16 42 H 0.26 15.82 8.73 -92.71 -0.81 15.01 16 43 H 0.03 1.24 3.83 -2.39 -0.01 1.23 16 44 H 0.03 1.24 8.06 -2.39 -0.02 1.22 16 45 H 0.40 7.03 9.12 -74.06 -0.68 6.36 16 46 H 0.16 1.90 6.52 -2.91 -0.02 1.88 16 Total: -1.00 -78.80 378.61 -3.22 -82.02 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -1.03 Total: 20.90 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.05 Total: 13.56 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -7.52 Total: -121.33 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -2.52 Total: -47.85 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 1.80 Total: 52.70 kcal Total: -78.80 -3.22 -82.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958549290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.647 kcal (2) G-P(sol) polarization free energy of solvation -78.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds