Wall clock time and date at job start Tue Mar 31 2020 20:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50692 * 109.47240 * 2 1 4 4 C 1.38357 * 120.27082 * 269.99491 * 3 2 1 5 5 N 1.31883 * 121.18512 * 179.97438 * 4 3 2 6 6 C 1.32238 * 121.80190 * 0.02562 * 5 4 3 7 7 O 1.35427 * 119.80295 * 180.02562 * 6 5 4 8 8 C 1.40278 * 120.40024 * 0.02562 * 6 5 4 9 9 C 1.47525 * 120.59788 * 179.97438 * 8 6 5 10 10 O 1.21587 * 119.99778 * 0.02562 * 9 8 6 11 11 N 1.34782 * 119.99811 * 180.02562 * 9 8 6 12 12 C 1.46498 * 119.99590 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46946 * 179.97438 * 12 11 9 14 14 H 1.09004 * 110.63699 * 56.68659 * 13 12 11 15 15 C 1.54320 * 110.72327 * 293.54656 * 13 12 11 16 16 N 1.47021 * 107.27607 * 219.44451 * 15 13 12 17 17 C 1.36934 * 125.65397 * 178.90119 * 16 15 13 18 18 H 1.07999 * 119.99691 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00115 * 179.97438 * 17 16 15 20 20 N 1.31612 * 119.99996 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 119.99834 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47610 * 59.99919 * 21 19 17 23 23 H 1.48503 * 109.47433 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47236 * 299.99845 * 21 19 17 25 25 C 1.47429 * 108.69993 * 358.93824 * 16 15 13 26 26 C 1.54918 * 104.83106 * 24.12899 * 25 16 15 27 27 H 1.08994 * 111.00245 * 204.91858 * 26 25 16 28 28 O 1.42897 * 111.00168 * 81.06580 * 26 25 16 29 29 C 1.38339 * 120.27102 * 89.99869 * 3 2 1 30 30 H 1.08993 * 109.47023 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47196 * 300.00263 * 1 2 3 32 32 H 1.09000 * 109.46621 * 59.99854 * 1 2 3 33 33 H 1.08999 * 109.47196 * 239.99737 * 2 1 3 34 34 H 1.09008 * 109.46479 * 119.99860 * 2 1 3 35 35 H 1.07995 * 119.40928 * 0.02562 * 4 3 2 36 36 H 0.96697 * 114.00585 * 269.98662 * 7 6 5 37 37 H 0.96999 * 119.99853 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47404 * 299.99796 * 12 11 9 39 39 H 1.09002 * 109.47025 * 60.00100 * 12 11 9 40 40 H 1.09005 * 109.87863 * 338.85718 * 15 13 12 41 41 H 1.09002 * 109.88527 * 99.86599 * 15 13 12 42 42 H 0.97000 * 120.00325 * 180.02562 * 20 19 17 43 43 H 1.08994 * 110.37010 * 142.96613 * 25 16 15 44 44 H 1.09002 * 110.36932 * 265.18340 * 25 16 15 45 45 H 0.96695 * 114.00181 * 67.80536 * 28 26 25 46 46 H 1.08002 * 120.82885 * 0.27248 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2650 2.0782 -1.1949 5 7 2.7041 3.3216 -1.2160 6 6 2.9422 3.9955 -0.1034 7 8 3.3921 5.2710 -0.1722 8 6 2.7317 3.3972 1.1478 9 6 2.9965 4.1447 2.3918 10 8 3.4005 5.2903 2.3383 11 7 2.7905 3.5578 3.5875 12 6 3.0529 4.3004 4.8227 13 6 2.7399 3.4117 6.0283 14 1 3.3183 2.4888 5.9856 15 6 1.2291 3.1063 6.1039 16 7 0.8445 3.1538 7.5221 17 6 -0.4186 2.9587 8.0136 18 1 -1.2345 2.7493 7.3378 19 6 -0.6502 3.0300 9.3804 20 7 0.3442 3.2846 10.2040 21 14 -2.3732 2.7631 10.0508 22 1 -2.8449 1.4054 9.6773 23 1 -2.3540 2.8902 11.5302 24 1 -3.2904 3.7808 9.4779 25 6 2.0440 3.4473 8.3276 26 6 3.0077 4.1713 7.3544 27 1 4.0441 4.0523 7.6703 28 8 2.6676 5.5536 7.2306 29 6 2.2648 2.0782 1.1948 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.0829 1.5643 -2.1272 36 1 4.3558 5.3477 -0.1923 37 1 2.4678 2.6441 3.6300 38 1 4.1012 4.5975 4.8524 39 1 2.4223 5.1890 4.8534 40 1 0.6709 3.8561 5.5432 41 1 1.0304 2.1150 5.6966 42 1 0.1825 3.3341 11.1591 43 1 1.7895 4.0985 9.1638 44 1 2.4928 2.5227 8.6906 45 1 2.8180 6.0692 8.0347 46 1 2.0950 1.5846 2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958549293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:43 Heat of formation + Delta-G solvation = -63.710763 kcal Electronic energy + Delta-G solvation = -28972.647464 eV Core-core repulsion = 24863.431024 eV Total energy + Delta-G solvation = -4109.216440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12961 -39.30850 -38.20342 -37.51658 -34.91149 -34.58880 -34.53145 -32.90979 -31.94747 -29.71949 -29.34443 -27.75910 -25.79638 -24.87629 -24.34708 -23.54532 -22.04114 -20.79278 -20.12373 -19.65584 -19.03997 -17.56358 -17.49033 -17.29210 -16.41254 -16.16964 -15.49461 -15.30184 -14.95838 -14.86340 -14.42307 -14.27717 -14.19497 -13.84723 -13.68026 -13.52635 -13.36896 -13.12483 -12.71542 -12.42645 -12.32877 -12.07274 -11.97596 -11.72426 -11.41056 -11.39721 -11.27535 -10.81867 -10.70222 -10.41591 -10.32866 -10.20502 -10.13114 -10.00827 -9.85733 -9.55087 -9.15338 -9.12146 -8.89951 -8.70715 -6.87841 -5.71833 -3.11999 0.30558 0.74671 2.72178 3.06664 3.29334 3.37424 3.41909 3.42864 3.56659 4.17732 4.30350 4.40293 4.44332 4.46280 4.69451 4.79902 4.92262 4.95891 5.06768 5.16051 5.27513 5.29946 5.36407 5.41009 5.47489 5.49733 5.56961 5.58533 5.84461 5.85708 5.86734 6.01285 6.07676 6.09302 6.31325 6.39156 6.44131 6.59477 6.81577 7.24682 7.28005 7.47147 7.54077 7.56481 7.72368 8.18599 8.21366 8.34842 9.15587 9.77002 10.40784 11.33012 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012966 B = 0.002855 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.025250 B = 9804.654973 C =11362.794657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 C -0.153 4.153 4 C 0.148 3.852 5 N -0.505 5.505 6 C 0.363 3.637 7 O -0.459 6.459 8 C -0.196 4.196 9 C 0.558 3.442 10 O -0.520 6.520 11 N -0.721 5.721 12 C 0.141 3.859 13 C -0.107 4.107 14 H 0.085 0.915 15 C 0.145 3.855 16 N -0.597 5.597 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.926 5.926 21 Si 0.916 3.084 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.126 3.874 26 C 0.083 3.917 27 H 0.055 0.945 28 O -0.557 6.557 29 C -0.028 4.028 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.163 0.837 36 H 0.404 0.596 37 H 0.397 0.603 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.028 0.972 41 H 0.017 0.983 42 H 0.253 0.747 43 H 0.112 0.888 44 H 0.019 0.981 45 H 0.375 0.625 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.156 -6.349 -18.732 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.155 4.155 4 C -0.010 4.010 5 N -0.224 5.224 6 C 0.183 3.817 7 O -0.266 6.266 8 C -0.203 4.203 9 C 0.344 3.656 10 O -0.396 6.396 11 N -0.373 5.373 12 C 0.018 3.982 13 C -0.126 4.126 14 H 0.103 0.897 15 C 0.018 3.982 16 N -0.323 5.323 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.575 5.575 21 Si 0.746 3.254 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.001 3.999 26 C 0.022 3.978 27 H 0.072 0.928 28 O -0.363 6.363 29 C -0.054 4.054 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.181 0.819 36 H 0.264 0.736 37 H 0.232 0.768 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.046 0.954 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.129 0.871 44 H 0.037 0.963 45 H 0.222 0.778 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.762 -5.064 -19.900 21.952 hybrid contribution -0.604 -1.026 1.775 2.137 sum 7.158 -6.090 -18.125 20.417 Atomic orbital electron populations 1.21798 0.94182 1.02285 1.02590 1.20480 0.96519 0.91000 1.03640 1.20875 1.02288 0.98712 0.93600 1.22642 0.91824 0.88700 0.97867 1.67340 1.14873 1.08727 1.31420 1.19182 0.91895 0.84344 0.86288 1.84736 1.27772 1.18810 1.95304 1.21219 1.08419 0.95645 0.95008 1.17781 0.78668 0.86276 0.82893 1.90821 1.45048 1.16757 1.87020 1.46024 1.67754 1.17627 1.05910 1.21276 1.01289 0.95152 0.80485 1.22514 0.98768 0.97763 0.93577 0.89652 1.21302 0.91044 0.97270 0.88538 1.44323 1.05110 1.83281 0.99548 1.19035 0.84278 1.40619 0.90925 0.90548 1.24757 0.97867 1.02226 0.95788 1.69730 1.29227 1.56117 1.02381 0.86131 0.83452 0.77977 0.77817 1.21233 1.21554 1.21116 1.22590 0.85136 0.97884 0.94295 1.23185 0.97031 0.82201 0.95387 0.92750 1.86394 1.90003 1.19765 1.40090 1.21682 0.92408 0.92217 0.99079 0.91874 0.92183 0.92445 0.90365 0.90346 0.81944 0.73635 0.76832 0.91608 0.89883 0.95388 0.96471 0.93669 0.87058 0.96295 0.77768 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.90 37.16 0.37 -0.52 16 2 C -0.08 -0.42 6.08 -27.88 -0.17 -0.59 16 3 C -0.15 -1.20 5.14 -104.54 -0.54 -1.74 16 4 C 0.15 1.27 10.84 -17.49 -0.19 1.08 16 5 N -0.51 -5.91 10.37 -12.98 -0.13 -6.04 16 6 C 0.36 4.63 7.77 -16.61 -0.13 4.50 16 7 O -0.46 -6.02 11.66 -39.74 -0.46 -6.48 16 8 C -0.20 -2.39 5.90 -104.69 -0.62 -3.00 16 9 C 0.56 8.12 7.77 -12.47 -0.10 8.02 16 10 O -0.52 -9.28 15.19 -16.48 -0.25 -9.53 16 11 N -0.72 -9.57 5.35 -61.35 -0.33 -9.90 16 12 C 0.14 2.18 4.59 -4.04 -0.02 2.16 16 13 C -0.11 -1.76 2.95 -88.79 -0.26 -2.02 16 14 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 15 C 0.14 2.91 6.52 -3.07 -0.02 2.89 16 16 N -0.60 -14.89 3.39 -170.07 -0.58 -15.47 16 17 C -0.22 -6.06 10.27 -15.06 -0.15 -6.22 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 20 N -0.93 -26.26 10.09 55.49 0.56 -25.70 16 21 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.13 2.90 5.62 -2.52 -0.01 2.89 16 26 C 0.08 1.49 4.17 -24.58 -0.10 1.38 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 O -0.56 -10.19 12.22 -35.23 -0.43 -10.62 16 29 C -0.03 -0.26 9.31 -38.89 -0.36 -0.62 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.08 0.38 8.09 -51.92 -0.42 -0.04 16 35 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.40 3.52 9.06 45.56 0.41 3.94 16 37 H 0.40 4.31 6.43 -40.82 -0.26 4.05 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.54 7.44 -51.93 -0.39 1.15 16 40 H 0.03 0.60 7.76 -51.93 -0.40 0.20 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.11 2.88 5.88 -51.93 -0.31 2.58 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.38 5.60 9.12 45.56 0.42 6.01 16 46 H 0.14 1.03 6.51 -52.49 -0.34 0.68 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -35.43 379.18 -8.40 -43.83 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.06 Total: 9.57 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -2.40 Total: 7.81 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.48 Total: -57.10 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.14 Total: -26.63 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.43 -8.40 -43.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958549293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.884 kcal (2) G-P(sol) polarization free energy of solvation -35.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds