Wall clock time and date at job start Tue Mar 31 2020 20:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50692 * 109.47240 * 2 1 4 4 C 1.38357 * 120.27082 * 269.99491 * 3 2 1 5 5 N 1.31883 * 121.18512 * 179.97438 * 4 3 2 6 6 C 1.32238 * 121.80190 * 0.02562 * 5 4 3 7 7 O 1.35427 * 119.80295 * 180.02562 * 6 5 4 8 8 C 1.40278 * 120.40024 * 0.02562 * 6 5 4 9 9 C 1.47525 * 120.59788 * 179.97438 * 8 6 5 10 10 O 1.21587 * 119.99778 * 0.02562 * 9 8 6 11 11 N 1.34782 * 119.99811 * 180.02562 * 9 8 6 12 12 C 1.46498 * 119.99590 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46946 * 179.97438 * 12 11 9 14 14 H 1.09004 * 110.63699 * 56.68659 * 13 12 11 15 15 C 1.54320 * 110.72327 * 293.54656 * 13 12 11 16 16 N 1.47021 * 107.27607 * 219.44451 * 15 13 12 17 17 C 1.36934 * 125.65397 * 178.90119 * 16 15 13 18 18 H 1.07999 * 119.99691 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00115 * 179.97438 * 17 16 15 20 20 N 1.31612 * 119.99996 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 119.99834 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47610 * 59.99919 * 21 19 17 23 23 H 1.48503 * 109.47433 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47236 * 299.99845 * 21 19 17 25 25 C 1.47429 * 108.69993 * 358.93824 * 16 15 13 26 26 C 1.54918 * 104.83106 * 24.12899 * 25 16 15 27 27 H 1.08994 * 111.00245 * 204.91858 * 26 25 16 28 28 O 1.42897 * 111.00168 * 81.06580 * 26 25 16 29 29 C 1.38339 * 120.27102 * 89.99869 * 3 2 1 30 30 H 1.08993 * 109.47023 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47196 * 300.00263 * 1 2 3 32 32 H 1.09000 * 109.46621 * 59.99854 * 1 2 3 33 33 H 1.08999 * 109.47196 * 239.99737 * 2 1 3 34 34 H 1.09008 * 109.46479 * 119.99860 * 2 1 3 35 35 H 1.07995 * 119.40928 * 0.02562 * 4 3 2 36 36 H 0.96697 * 114.00585 * 269.98662 * 7 6 5 37 37 H 0.96999 * 119.99853 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47404 * 299.99796 * 12 11 9 39 39 H 1.09002 * 109.47025 * 60.00100 * 12 11 9 40 40 H 1.09005 * 109.87863 * 338.85718 * 15 13 12 41 41 H 1.09002 * 109.88527 * 99.86599 * 15 13 12 42 42 H 0.97000 * 120.00325 * 180.02562 * 20 19 17 43 43 H 1.08994 * 110.37010 * 142.96613 * 25 16 15 44 44 H 1.09002 * 110.36932 * 265.18340 * 25 16 15 45 45 H 0.96695 * 114.00181 * 67.80536 * 28 26 25 46 46 H 1.08002 * 120.82885 * 0.27248 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2650 2.0782 -1.1949 5 7 2.7041 3.3216 -1.2160 6 6 2.9422 3.9955 -0.1034 7 8 3.3921 5.2710 -0.1722 8 6 2.7317 3.3972 1.1478 9 6 2.9965 4.1447 2.3918 10 8 3.4005 5.2903 2.3383 11 7 2.7905 3.5578 3.5875 12 6 3.0529 4.3004 4.8227 13 6 2.7399 3.4117 6.0283 14 1 3.3183 2.4888 5.9856 15 6 1.2291 3.1063 6.1039 16 7 0.8445 3.1538 7.5221 17 6 -0.4186 2.9587 8.0136 18 1 -1.2345 2.7493 7.3378 19 6 -0.6502 3.0300 9.3804 20 7 0.3442 3.2846 10.2040 21 14 -2.3732 2.7631 10.0508 22 1 -2.8449 1.4054 9.6773 23 1 -2.3540 2.8902 11.5302 24 1 -3.2904 3.7808 9.4779 25 6 2.0440 3.4473 8.3276 26 6 3.0077 4.1713 7.3544 27 1 4.0441 4.0523 7.6703 28 8 2.6676 5.5536 7.2306 29 6 2.2648 2.0782 1.1948 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.0829 1.5643 -2.1272 36 1 4.3558 5.3477 -0.1923 37 1 2.4678 2.6441 3.6300 38 1 4.1012 4.5975 4.8524 39 1 2.4223 5.1890 4.8534 40 1 0.6709 3.8561 5.5432 41 1 1.0304 2.1150 5.6966 42 1 0.1825 3.3341 11.1591 43 1 1.7895 4.0985 9.1638 44 1 2.4928 2.5227 8.6906 45 1 2.8180 6.0692 8.0347 46 1 2.0950 1.5846 2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958549293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:42 Heat of formation + Delta-G solvation = -93.238254 kcal Electronic energy + Delta-G solvation = -28973.927873 eV Core-core repulsion = 24863.431024 eV Total energy + Delta-G solvation = -4110.496848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.98908 -40.49128 -39.61404 -38.38489 -36.33179 -36.08947 -35.20209 -34.17543 -33.33656 -31.25634 -30.07919 -29.39226 -27.35767 -26.05234 -25.06522 -24.82246 -22.91740 -22.21138 -21.48190 -20.98376 -19.92447 -19.14289 -18.59744 -18.30348 -17.85601 -17.11641 -16.83794 -16.59266 -16.34939 -15.87607 -15.75999 -15.53784 -15.35651 -14.80806 -14.70266 -14.44039 -14.35928 -14.22594 -14.01531 -13.88198 -13.65635 -13.17142 -13.04270 -13.00327 -12.80406 -12.62236 -12.37002 -12.35527 -12.03683 -11.86815 -11.83121 -11.82504 -11.64185 -11.19343 -11.01531 -10.80201 -10.66205 -10.45751 -10.17816 -9.79576 -8.85318 -7.78485 -5.20601 -0.50853 0.00940 1.46282 1.48914 1.54971 1.75165 2.00169 2.47741 2.49220 2.72933 3.28011 3.34887 3.44413 3.58771 3.65147 3.69006 3.82228 3.89974 3.98106 4.00015 4.14764 4.28299 4.43593 4.49871 4.53785 4.60467 4.64473 4.68962 4.82728 4.83174 4.90757 4.93432 5.01302 5.17763 5.29285 5.34036 5.35446 5.38466 5.40445 5.50184 5.51467 5.78201 6.29383 6.40218 6.53647 6.78906 6.96563 7.10841 7.12140 7.78575 8.41117 9.23380 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012966 B = 0.002855 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.025250 B = 9804.654973 C =11362.794657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.074 4.074 3 C -0.142 4.142 4 C 0.150 3.850 5 N -0.526 5.526 6 C 0.344 3.656 7 O -0.481 6.481 8 C -0.214 4.214 9 C 0.558 3.442 10 O -0.561 6.561 11 N -0.711 5.711 12 C 0.156 3.844 13 C -0.091 4.091 14 H 0.118 0.882 15 C 0.142 3.858 16 N -0.620 5.620 17 C -0.238 4.238 18 H 0.076 0.924 19 C -0.064 4.064 20 N -0.947 5.947 21 Si 0.977 3.023 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.282 1.282 25 C 0.127 3.873 26 C 0.092 3.908 27 H 0.091 0.909 28 O -0.571 6.571 29 C -0.025 4.025 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.197 0.803 36 H 0.416 0.584 37 H 0.410 0.590 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.010 0.990 41 H 0.036 0.964 42 H 0.247 0.753 43 H 0.078 0.922 44 H 0.004 0.996 45 H 0.388 0.612 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.331 -8.647 -20.208 23.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 C -0.144 4.144 4 C -0.008 4.008 5 N -0.245 5.245 6 C 0.165 3.835 7 O -0.290 6.290 8 C -0.220 4.220 9 C 0.346 3.654 10 O -0.440 6.440 11 N -0.363 5.363 12 C 0.032 3.968 13 C -0.110 4.110 14 H 0.136 0.864 15 C 0.017 3.983 16 N -0.346 5.346 17 C -0.367 4.367 18 H 0.094 0.906 19 C -0.257 4.257 20 N -0.597 5.597 21 Si 0.805 3.195 22 H -0.203 1.203 23 H -0.219 1.219 24 H -0.209 1.209 25 C 0.002 3.998 26 C 0.032 3.968 27 H 0.108 0.892 28 O -0.378 6.378 29 C -0.051 4.051 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.214 0.786 36 H 0.277 0.723 37 H 0.248 0.752 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.028 0.972 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.021 0.979 45 H 0.237 0.763 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.947 -7.388 -21.394 23.988 hybrid contribution -0.698 -0.363 2.156 2.296 sum 7.248 -7.751 -19.238 21.971 Atomic orbital electron populations 1.21812 0.94525 1.02815 1.01858 1.20560 0.95976 0.89289 1.05389 1.21172 1.00734 0.99776 0.92701 1.23298 0.90051 0.87734 0.99668 1.67381 1.15931 1.10122 1.31079 1.19353 0.92791 0.84396 0.86969 1.84680 1.29110 1.19808 1.95432 1.21031 1.10674 0.96835 0.93497 1.18143 0.77690 0.85898 0.83715 1.90794 1.47015 1.18603 1.87620 1.45844 1.67439 1.18044 1.04988 1.20944 1.00946 0.93915 0.80977 1.22470 0.96464 0.98937 0.93121 0.86393 1.21438 0.93367 0.97558 0.85974 1.44626 1.04909 1.83300 1.01765 1.19377 0.85719 1.40293 0.91354 0.90575 1.25539 1.01315 1.02650 0.96156 1.69976 1.30690 1.56932 1.02069 0.85174 0.79454 0.78108 0.76723 1.20253 1.21854 1.20873 1.22446 0.85750 0.96984 0.94660 1.23114 0.97347 0.81571 0.94783 0.89154 1.86384 1.90249 1.20016 1.41148 1.21957 0.91373 0.90996 1.00729 0.90755 0.93626 0.92528 0.88077 0.89256 0.78639 0.72271 0.75224 0.90740 0.93238 0.97198 0.94634 0.94316 0.90403 0.97852 0.76309 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.90 71.98 0.71 -0.63 16 2 C -0.07 -0.51 6.08 29.85 0.18 -0.33 16 3 C -0.14 -1.80 5.14 -19.81 -0.10 -1.91 16 4 C 0.15 2.19 10.84 84.71 0.92 3.11 16 5 N -0.53 -11.73 10.37 -308.00 -3.19 -14.92 16 6 C 0.34 8.75 7.77 85.13 0.66 9.41 16 7 O -0.48 -13.06 11.66 -66.40 -0.77 -13.84 16 8 C -0.21 -5.03 5.90 -19.91 -0.12 -5.15 16 9 C 0.56 16.05 7.77 86.69 0.67 16.73 16 10 O -0.56 -20.41 15.19 16.83 0.26 -20.16 16 11 N -0.71 -17.87 5.35 -466.27 -2.50 -20.37 16 12 C 0.16 4.64 4.59 86.38 0.40 5.03 16 13 C -0.09 -2.80 2.95 -9.61 -0.03 -2.83 16 14 H 0.12 2.93 8.14 -2.38 -0.02 2.91 16 15 C 0.14 5.57 6.52 86.73 0.57 6.13 16 16 N -0.62 -31.03 3.39 -691.97 -2.35 -33.38 16 17 C -0.24 -13.23 10.27 84.03 0.86 -12.36 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 19 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 20 N -0.95 -54.77 10.09 21.65 0.22 -54.55 16 21 Si 0.98 45.16 29.55 68.60 2.03 47.19 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 C 0.13 5.86 5.62 86.86 0.49 6.35 16 26 C 0.09 3.19 4.17 31.99 0.13 3.33 16 27 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 28 O -0.57 -20.60 12.22 -148.98 -1.82 -22.42 16 29 C -0.02 -0.40 9.31 22.72 0.21 -0.19 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.10 0.31 8.09 -2.39 -0.02 0.29 16 34 H 0.09 0.49 8.09 -2.38 -0.02 0.47 16 35 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.42 7.78 9.06 -74.06 -0.67 7.11 16 37 H 0.41 7.92 6.43 -92.71 -0.60 7.33 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.05 1.84 7.44 -2.39 -0.02 1.82 16 40 H 0.01 0.43 7.76 -2.38 -0.02 0.41 16 41 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 43 H 0.08 4.14 5.88 -2.39 -0.01 4.13 16 44 H 0.00 0.17 8.14 -2.39 -0.02 0.16 16 45 H 0.39 11.49 9.12 -74.06 -0.68 10.81 16 46 H 0.16 1.84 6.51 -2.91 -0.02 1.82 16 Total: -1.00 -79.10 379.18 -3.01 -82.11 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.90 Total: 26.74 kcal Atomic # 6 Polarization: 17.56 SS G_CDS: 6.02 Total: 23.59 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -7.82 Total: -123.22 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -2.34 Total: -56.41 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -79.10 -3.01 -82.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958549293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.124 kcal (2) G-P(sol) polarization free energy of solvation -79.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds