Wall clock time and date at job start Tue Mar 31 2020 18:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30619 * 125.42024 * 2 1 4 4 C 1.33696 * 108.98802 * 179.75163 * 3 2 1 5 5 C 1.50702 * 126.26730 * 180.27070 * 4 3 2 6 6 C 1.36335 * 107.45566 * 0.42743 * 4 3 2 7 7 C 1.46726 * 126.64100 * 179.84468 * 6 4 3 8 8 O 1.21683 * 120.00310 * 359.70881 * 7 6 4 9 9 N 1.34777 * 119.99870 * 179.43627 * 7 6 4 10 10 C 1.47491 * 125.66316 * 0.29826 * 9 7 6 11 11 C 1.55022 * 104.90285 * 204.02793 * 10 9 7 12 12 C 1.54519 * 101.51488 * 323.62006 * 11 10 9 13 13 C 1.47180 * 125.66503 * 179.97438 * 9 7 6 14 14 C 1.52517 * 110.05778 * 153.10044 * 12 11 10 15 15 N 1.47310 * 108.37688 * 72.02342 * 14 12 11 16 16 C 1.36933 * 121.05881 * 229.39099 * 15 14 12 17 17 H 1.08001 * 120.00024 * 154.19569 * 16 15 14 18 18 C 1.38817 * 120.00074 * 334.19904 * 16 15 14 19 19 N 1.31615 * 120.00141 * 159.50989 * 18 16 15 20 20 Si 1.86799 * 119.99786 * 339.50310 * 18 16 15 21 21 H 1.48504 * 109.47168 * 90.86328 * 20 18 16 22 22 H 1.48503 * 109.47229 * 210.86266 * 20 18 16 23 23 H 1.48505 * 109.47345 * 330.86130 * 20 18 16 24 24 C 1.47162 * 117.88312 * 49.41894 * 15 14 12 25 25 C 1.53276 * 108.54083 * 308.88315 * 24 15 14 26 26 O 1.42066 * 110.33731 * 276.05227 * 12 11 10 27 27 O 1.33664 * 125.42325 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47338 * 269.97661 * 1 2 3 29 29 H 1.09002 * 109.47299 * 29.97531 * 1 2 3 30 30 H 1.08996 * 109.47154 * 149.98153 * 1 2 3 31 31 H 1.09002 * 109.46958 * 270.18454 * 5 4 3 32 32 H 1.08998 * 109.47520 * 30.18332 * 5 4 3 33 33 H 1.09006 * 109.47022 * 150.19125 * 5 4 3 34 34 H 1.09001 * 110.34994 * 322.87922 * 10 9 7 35 35 H 1.08997 * 110.35344 * 85.16751 * 10 9 7 36 36 H 1.09002 * 111.01869 * 81.67317 * 11 10 9 37 37 H 1.08994 * 111.01686 * 205.52454 * 11 10 9 38 38 H 1.09004 * 109.91138 * 297.85354 * 13 9 7 39 39 H 1.08996 * 109.91089 * 59.11887 * 13 9 7 40 40 H 1.08999 * 109.68257 * 191.74558 * 14 12 11 41 41 H 1.08998 * 109.68252 * 312.26697 * 14 12 11 42 42 H 0.97000 * 120.00087 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.62624 * 68.60480 * 24 15 14 44 44 H 1.09008 * 109.62589 * 188.97850 * 24 15 14 45 45 H 1.09004 * 109.51365 * 172.80606 * 25 24 15 46 46 H 1.09001 * 109.51213 * 292.94990 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5464 0.6863 0.0055 5 6 4.7451 1.5995 0.0132 6 6 3.5708 -0.6769 -0.0007 7 6 4.7635 -1.5313 -0.0011 8 8 5.8719 -1.0290 -0.0009 9 7 4.6316 -2.8726 0.0038 10 6 3.3549 -3.6111 0.0036 11 6 3.6934 -4.9927 0.6199 12 6 5.1086 -5.2449 0.0530 13 6 5.7376 -3.8437 0.0035 14 6 5.8932 -6.1561 0.9912 15 7 5.3401 -7.5174 0.8867 16 6 5.0107 -8.2340 2.0060 17 1 4.2570 -9.0056 1.9509 18 6 5.6454 -7.9688 3.2118 19 7 5.0865 -8.3375 4.3448 20 14 7.2930 -7.0885 3.2260 21 1 7.0707 -5.6236 3.3267 22 1 8.0904 -7.5493 4.3909 23 1 8.0276 -7.3926 1.9718 24 6 5.1534 -8.0829 -0.4591 25 6 4.3712 -7.0741 -1.3075 26 8 5.0260 -5.8029 -1.2509 27 8 2.2817 -1.0892 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 5.0371 1.8244 -1.0127 32 1 4.4934 2.5253 0.5305 33 1 5.5720 1.1093 0.5271 34 1 2.6173 -3.0931 0.6166 35 1 2.9861 -3.7304 -1.0151 36 1 3.7119 -4.9413 1.7085 37 1 2.9933 -5.7551 0.2784 38 1 6.3296 -3.7318 -0.9050 39 1 6.3665 -3.6904 0.8805 40 1 6.9441 -6.1635 0.7020 41 1 5.7971 -5.7979 2.0162 42 1 5.5302 -8.1525 5.1873 43 1 6.1253 -8.2698 -0.9157 44 1 4.5960 -9.0171 -0.3896 45 1 4.3340 -7.4188 -2.3409 46 1 3.3576 -6.9792 -0.9180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972317216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:04 Heat of formation + Delta-G solvation = -11.972381 kcal Electronic energy + Delta-G solvation = -30402.242081 eV Core-core repulsion = 26295.269185 eV Total energy + Delta-G solvation = -4106.972895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.65377 -40.44522 -38.94240 -36.54008 -35.42200 -34.75248 -33.05592 -31.80616 -31.66259 -29.88728 -29.58479 -28.38302 -27.42115 -25.65999 -23.86448 -23.31039 -22.04214 -21.99820 -21.16074 -20.02737 -19.29284 -17.72928 -17.40741 -17.21760 -16.34707 -16.16957 -15.86449 -15.40619 -15.12216 -14.80848 -14.49690 -14.22242 -14.13975 -13.87494 -13.61256 -13.41055 -13.36217 -13.18007 -12.98311 -12.93581 -12.61439 -12.41841 -12.36059 -12.31581 -11.89956 -11.61378 -11.29004 -11.21835 -11.18571 -11.03386 -10.75486 -10.46713 -10.28411 -10.24452 -9.82420 -9.60113 -9.46791 -9.11017 -8.67086 -8.64164 -7.12194 -6.07083 -3.44094 0.62747 2.14602 2.16715 2.85873 2.96141 3.22162 3.41681 3.42851 3.61867 3.91065 4.30960 4.41141 4.48800 4.59605 4.65915 4.90599 4.95201 4.96672 5.03147 5.11050 5.26225 5.34099 5.34341 5.37324 5.48391 5.49474 5.57585 5.62293 5.68258 5.69832 5.75075 5.81355 5.86646 5.99221 6.04690 6.10611 6.16360 6.20941 6.30527 6.37731 6.39761 6.62275 7.23103 7.39742 7.57412 7.74506 7.87895 8.18415 8.75332 9.56889 9.92683 11.08315 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.003456 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.883558 B = 8100.481819 C = 8373.745051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.215 3.785 3 N -0.491 5.491 4 C 0.080 3.920 5 C -0.080 4.080 6 C -0.110 4.110 7 C 0.621 3.379 8 O -0.518 6.518 9 N -0.603 5.603 10 C 0.101 3.899 11 C -0.144 4.144 12 C 0.095 3.905 13 C 0.124 3.876 14 C 0.112 3.888 15 N -0.604 5.604 16 C -0.262 4.262 17 H 0.090 0.910 18 C 0.027 3.973 19 N -0.904 5.904 20 Si 0.875 3.125 21 H -0.287 1.287 22 H -0.300 1.300 23 H -0.269 1.269 24 C 0.112 3.888 25 C 0.044 3.956 26 O -0.372 6.372 27 O -0.183 6.183 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.037 0.963 41 H 0.085 0.915 42 H 0.264 0.736 43 H 0.032 0.968 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.277 14.337 -10.771 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.010 3.990 3 N -0.221 5.221 4 C -0.044 4.044 5 C -0.137 4.137 6 C -0.165 4.165 7 C 0.409 3.591 8 O -0.397 6.397 9 N -0.335 5.335 10 C -0.021 4.021 11 C -0.182 4.182 12 C 0.053 3.947 13 C 0.002 3.998 14 C -0.015 4.015 15 N -0.329 5.329 16 C -0.389 4.389 17 H 0.107 0.893 18 C -0.173 4.173 19 N -0.546 5.546 20 Si 0.705 3.295 21 H -0.214 1.214 22 H -0.228 1.228 23 H -0.194 1.194 24 C -0.014 4.014 25 C -0.034 4.034 26 O -0.291 6.291 27 O -0.070 6.070 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.863 15.235 -10.734 20.228 hybrid contribution 0.962 -0.484 0.360 1.136 sum -6.901 14.751 -10.375 19.309 Atomic orbital electron populations 1.20384 0.80772 1.05534 1.05198 1.26583 0.96742 0.78873 0.96824 1.70350 1.01568 1.30000 1.20228 1.22034 0.93489 0.91143 0.97715 1.20389 0.92248 0.97397 1.03694 1.22779 0.82279 0.94893 1.16527 1.15894 0.85576 0.80025 0.77643 1.90854 1.23781 1.73117 1.51917 1.48396 1.09532 1.04280 1.71280 1.22556 0.85375 0.92760 1.01428 1.23216 0.97729 0.95146 1.02072 1.22343 0.95491 0.91748 0.85132 1.21881 0.88987 0.85427 1.03515 1.21817 0.95437 0.85816 0.98404 1.44374 1.75728 1.10703 1.02104 1.18881 1.17132 1.17590 0.85345 0.89280 1.25223 0.98068 0.98680 0.95285 1.69812 1.38128 1.49585 0.97120 0.87108 0.86594 0.78626 0.77133 1.21426 1.22771 1.19441 1.21630 0.98023 0.95735 0.85976 1.23163 0.96045 0.83961 1.00234 1.87708 1.79559 1.35091 1.26776 1.84565 1.16203 1.36826 1.69415 0.88340 0.87784 0.88841 0.90021 0.90484 0.88594 0.90097 0.90933 0.89108 0.88572 0.89692 0.89500 0.94570 0.89689 0.92580 0.95000 0.90813 0.89298 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 36.01 0.38 0.04 16 2 C 0.22 2.34 8.32 -12.79 -0.11 2.23 16 3 N -0.49 -6.32 11.26 -7.07 -0.08 -6.40 16 4 C 0.08 1.10 7.16 -82.46 -0.59 0.51 16 5 C -0.08 -0.91 9.87 36.01 0.36 -0.56 16 6 C -0.11 -1.59 6.96 -36.84 -0.26 -1.85 16 7 C 0.62 10.00 7.82 -12.83 -0.10 9.90 16 8 O -0.52 -9.18 15.12 5.20 0.08 -9.10 16 9 N -0.60 -9.48 3.33 -172.19 -0.57 -10.05 16 10 C 0.10 1.41 6.19 -2.43 -0.02 1.40 16 11 C -0.14 -2.30 5.91 -24.87 -0.15 -2.45 16 12 C 0.09 1.66 0.83 -89.72 -0.07 1.58 16 13 C 0.12 2.05 6.25 -3.32 -0.02 2.03 16 14 C 0.11 2.34 2.92 -3.85 -0.01 2.33 16 15 N -0.60 -13.55 2.73 -172.17 -0.47 -14.02 16 16 C -0.26 -6.90 10.10 -15.06 -0.15 -7.05 16 17 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 18 C 0.03 0.75 5.25 -17.43 -0.09 0.66 16 19 N -0.90 -26.66 13.97 55.49 0.78 -25.89 16 20 Si 0.88 21.70 24.27 -169.99 -4.13 17.58 16 21 H -0.29 -6.83 6.54 56.52 0.37 -6.47 16 22 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 23 H -0.27 -6.62 6.62 56.52 0.37 -6.25 16 24 C 0.11 2.06 6.72 -3.54 -0.02 2.04 16 25 C 0.04 0.67 6.76 37.30 0.25 0.92 16 26 O -0.37 -6.36 10.21 -35.23 -0.36 -6.72 16 27 O -0.18 -2.33 8.07 4.44 0.04 -2.29 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 1.19 6.47 -51.93 -0.34 0.85 16 34 H 0.08 1.05 6.24 -51.93 -0.32 0.73 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.59 7.86 -51.93 -0.41 1.19 16 37 H 0.10 1.51 5.98 -51.93 -0.31 1.20 16 38 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 39 H 0.09 1.46 7.79 -51.93 -0.40 1.06 16 40 H 0.04 0.78 6.85 -51.93 -0.36 0.43 16 41 H 0.09 1.94 4.46 -51.93 -0.23 1.71 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.30 7.96 -51.92 -0.41 0.88 16 45 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.81 6.13 -51.93 -0.32 0.49 16 LS Contribution 360.11 15.07 5.43 5.43 Total: -1.00 -32.46 360.11 -6.42 -38.87 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.52 Total: 0.87 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -0.60 Total: 11.72 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.35 Total: -56.36 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.25 Total: -18.11 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.13 Total: 17.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.46 -6.42 -38.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972317216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.901 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds