Wall clock time and date at job start Tue Mar 31 2020 18:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30619 * 125.42024 * 2 1 4 4 C 1.33696 * 108.98802 * 179.75163 * 3 2 1 5 5 C 1.50702 * 126.26730 * 180.27070 * 4 3 2 6 6 C 1.36335 * 107.45566 * 0.42743 * 4 3 2 7 7 C 1.46726 * 126.64100 * 179.84468 * 6 4 3 8 8 O 1.21683 * 120.00310 * 359.70881 * 7 6 4 9 9 N 1.34777 * 119.99870 * 179.43627 * 7 6 4 10 10 C 1.47491 * 125.66316 * 0.29826 * 9 7 6 11 11 C 1.55022 * 104.90285 * 204.02793 * 10 9 7 12 12 C 1.54519 * 101.51488 * 323.62006 * 11 10 9 13 13 C 1.47180 * 125.66503 * 179.97438 * 9 7 6 14 14 C 1.52517 * 110.05778 * 153.10044 * 12 11 10 15 15 N 1.47310 * 108.37688 * 72.02342 * 14 12 11 16 16 C 1.36933 * 121.05881 * 229.39099 * 15 14 12 17 17 H 1.08001 * 120.00024 * 154.19569 * 16 15 14 18 18 C 1.38817 * 120.00074 * 334.19904 * 16 15 14 19 19 N 1.31615 * 120.00141 * 159.50989 * 18 16 15 20 20 Si 1.86799 * 119.99786 * 339.50310 * 18 16 15 21 21 H 1.48504 * 109.47168 * 90.86328 * 20 18 16 22 22 H 1.48503 * 109.47229 * 210.86266 * 20 18 16 23 23 H 1.48505 * 109.47345 * 330.86130 * 20 18 16 24 24 C 1.47162 * 117.88312 * 49.41894 * 15 14 12 25 25 C 1.53276 * 108.54083 * 308.88315 * 24 15 14 26 26 O 1.42066 * 110.33731 * 276.05227 * 12 11 10 27 27 O 1.33664 * 125.42325 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47338 * 269.97661 * 1 2 3 29 29 H 1.09002 * 109.47299 * 29.97531 * 1 2 3 30 30 H 1.08996 * 109.47154 * 149.98153 * 1 2 3 31 31 H 1.09002 * 109.46958 * 270.18454 * 5 4 3 32 32 H 1.08998 * 109.47520 * 30.18332 * 5 4 3 33 33 H 1.09006 * 109.47022 * 150.19125 * 5 4 3 34 34 H 1.09001 * 110.34994 * 322.87922 * 10 9 7 35 35 H 1.08997 * 110.35344 * 85.16751 * 10 9 7 36 36 H 1.09002 * 111.01869 * 81.67317 * 11 10 9 37 37 H 1.08994 * 111.01686 * 205.52454 * 11 10 9 38 38 H 1.09004 * 109.91138 * 297.85354 * 13 9 7 39 39 H 1.08996 * 109.91089 * 59.11887 * 13 9 7 40 40 H 1.08999 * 109.68257 * 191.74558 * 14 12 11 41 41 H 1.08998 * 109.68252 * 312.26697 * 14 12 11 42 42 H 0.97000 * 120.00087 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.62624 * 68.60480 * 24 15 14 44 44 H 1.09008 * 109.62589 * 188.97850 * 24 15 14 45 45 H 1.09004 * 109.51365 * 172.80606 * 25 24 15 46 46 H 1.09001 * 109.51213 * 292.94990 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5464 0.6863 0.0055 5 6 4.7451 1.5995 0.0132 6 6 3.5708 -0.6769 -0.0007 7 6 4.7635 -1.5313 -0.0011 8 8 5.8719 -1.0290 -0.0009 9 7 4.6316 -2.8726 0.0038 10 6 3.3549 -3.6111 0.0036 11 6 3.6934 -4.9927 0.6199 12 6 5.1086 -5.2449 0.0530 13 6 5.7376 -3.8437 0.0035 14 6 5.8932 -6.1561 0.9912 15 7 5.3401 -7.5174 0.8867 16 6 5.0107 -8.2340 2.0060 17 1 4.2570 -9.0056 1.9509 18 6 5.6454 -7.9688 3.2118 19 7 5.0865 -8.3375 4.3448 20 14 7.2930 -7.0885 3.2260 21 1 7.0707 -5.6236 3.3267 22 1 8.0904 -7.5493 4.3909 23 1 8.0276 -7.3926 1.9718 24 6 5.1534 -8.0829 -0.4591 25 6 4.3712 -7.0741 -1.3075 26 8 5.0260 -5.8029 -1.2509 27 8 2.2817 -1.0892 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 5.0371 1.8244 -1.0127 32 1 4.4934 2.5253 0.5305 33 1 5.5720 1.1093 0.5271 34 1 2.6173 -3.0931 0.6166 35 1 2.9861 -3.7304 -1.0151 36 1 3.7119 -4.9413 1.7085 37 1 2.9933 -5.7551 0.2784 38 1 6.3296 -3.7318 -0.9050 39 1 6.3665 -3.6904 0.8805 40 1 6.9441 -6.1635 0.7020 41 1 5.7971 -5.7979 2.0162 42 1 5.5302 -8.1525 5.1873 43 1 6.1253 -8.2698 -0.9157 44 1 4.5960 -9.0171 -0.3896 45 1 4.3340 -7.4188 -2.3409 46 1 3.3576 -6.9792 -0.9180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972317216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:03 Heat of formation + Delta-G solvation = -36.818911 kcal Electronic energy + Delta-G solvation = -30403.319507 eV Core-core repulsion = 26295.269185 eV Total energy + Delta-G solvation = -4108.050322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.58702 -41.77355 -40.25361 -37.85217 -36.52056 -36.32308 -33.90705 -33.66443 -33.10305 -31.17057 -30.31782 -29.69708 -28.78256 -27.10285 -25.49066 -24.55185 -23.29365 -22.89434 -22.49599 -21.16614 -20.74137 -19.14681 -18.90459 -18.27786 -17.84083 -17.30607 -17.20746 -16.67122 -16.44082 -16.27465 -15.86889 -15.60729 -15.56366 -15.25058 -14.69962 -14.45350 -14.36583 -14.24572 -14.14807 -13.94815 -13.85905 -13.67792 -13.65185 -13.48940 -13.18130 -13.14937 -12.85927 -12.60065 -12.31746 -12.28783 -12.08417 -12.07404 -11.90937 -11.61388 -11.42242 -11.33012 -11.05890 -10.51760 -10.19943 -9.77155 -8.98910 -8.21377 -5.53016 -0.37106 1.16063 1.22704 1.23280 1.36663 1.42455 1.75169 1.81808 2.34637 2.58012 2.83068 2.87760 3.17805 3.30369 3.39232 3.56337 3.66995 3.69711 4.05876 4.12581 4.18657 4.27458 4.29814 4.37279 4.40499 4.43928 4.48367 4.53432 4.59042 4.61187 4.63908 4.64688 4.73088 4.76547 4.84913 4.87881 4.89759 4.97242 5.02879 5.08780 5.20286 5.28097 5.76522 6.06571 6.07572 6.22394 6.42913 6.68428 6.78964 7.52276 7.93649 8.97675 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.003456 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.883558 B = 8100.481819 C = 8373.745051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.231 3.769 3 N -0.515 5.515 4 C 0.082 3.918 5 C -0.079 4.079 6 C -0.140 4.140 7 C 0.620 3.380 8 O -0.544 6.544 9 N -0.607 5.607 10 C 0.113 3.887 11 C -0.140 4.140 12 C 0.103 3.897 13 C 0.127 3.873 14 C 0.109 3.891 15 N -0.617 5.617 16 C -0.241 4.241 17 H 0.067 0.933 18 C -0.024 4.024 19 N -0.949 5.949 20 Si 0.926 3.074 21 H -0.277 1.277 22 H -0.309 1.309 23 H -0.266 1.266 24 C 0.105 3.895 25 C 0.049 3.951 26 O -0.372 6.372 27 O -0.187 6.187 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.032 0.968 41 H 0.063 0.937 42 H 0.262 0.738 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.128 0.872 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 15.729 -12.917 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.027 3.973 3 N -0.245 5.245 4 C -0.042 4.042 5 C -0.136 4.136 6 C -0.194 4.194 7 C 0.409 3.591 8 O -0.424 6.424 9 N -0.338 5.338 10 C -0.009 4.009 11 C -0.178 4.178 12 C 0.061 3.939 13 C 0.004 3.996 14 C -0.016 4.016 15 N -0.342 5.342 16 C -0.370 4.370 17 H 0.084 0.916 18 C -0.220 4.220 19 N -0.595 5.595 20 Si 0.756 3.244 21 H -0.204 1.204 22 H -0.238 1.238 23 H -0.190 1.190 24 C -0.020 4.020 25 C -0.028 4.028 26 O -0.291 6.291 27 O -0.075 6.075 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.146 0.854 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.434 16.643 -12.935 23.093 hybrid contribution 1.312 -0.931 0.953 1.870 sum -8.122 15.713 -11.982 21.364 Atomic orbital electron populations 1.20775 0.76955 1.07359 1.06871 1.27772 0.98371 0.77933 0.93262 1.70422 1.01335 1.30825 1.21950 1.22398 0.94436 0.91214 0.96187 1.20423 0.91241 0.97562 1.04367 1.22427 0.82576 0.94844 1.19582 1.16079 0.85948 0.80033 0.77036 1.90828 1.24921 1.73555 1.53097 1.48422 1.09771 1.04267 1.71386 1.22541 0.84863 0.91169 1.02318 1.23127 0.97020 0.96766 1.00844 1.22058 0.95721 0.91299 0.84790 1.21747 0.89290 0.85227 1.03341 1.21762 0.95745 0.85859 0.98275 1.44489 1.75731 1.11326 1.02680 1.18848 1.15365 1.16277 0.86487 0.91566 1.25702 1.00615 1.00467 0.95200 1.69917 1.39479 1.52509 0.97609 0.86273 0.83247 0.78323 0.76591 1.20407 1.23810 1.19030 1.21876 0.98882 0.96990 0.84209 1.23262 0.95439 0.82294 1.01795 1.87728 1.79803 1.35674 1.25916 1.84546 1.15623 1.37462 1.69877 0.86461 0.86172 0.86732 0.88974 0.88893 0.89903 0.88960 0.89299 0.91195 0.87934 0.89292 0.90426 0.95044 0.91877 0.92921 0.94620 0.90288 0.85412 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 71.24 0.75 0.29 16 2 C 0.23 4.42 8.32 88.29 0.73 5.16 16 3 N -0.51 -12.24 11.26 -291.06 -3.28 -15.52 16 4 C 0.08 2.14 7.16 41.83 0.30 2.44 16 5 C -0.08 -1.74 9.87 71.24 0.70 -1.03 16 6 C -0.14 -3.90 6.96 24.05 0.17 -3.73 16 7 C 0.62 19.63 7.82 86.46 0.68 20.31 16 8 O -0.54 -19.31 15.12 -4.29 -0.06 -19.37 16 9 N -0.61 -18.44 3.33 -816.92 -2.72 -21.17 16 10 C 0.11 2.92 6.19 86.88 0.54 3.46 16 11 C -0.14 -4.29 5.91 31.80 0.19 -4.10 16 12 C 0.10 3.48 0.83 -10.21 -0.01 3.47 16 13 C 0.13 4.09 6.25 86.48 0.54 4.63 16 14 C 0.11 4.54 2.92 86.06 0.25 4.79 16 15 N -0.62 -27.29 2.73 -698.63 -1.91 -29.20 16 16 C -0.24 -12.82 10.10 84.04 0.85 -11.97 16 17 H 0.07 3.79 8.06 -2.91 -0.02 3.77 16 18 C -0.02 -1.37 5.25 84.86 0.45 -0.93 16 19 N -0.95 -57.60 13.97 21.65 0.30 -57.30 16 20 Si 0.93 45.74 24.27 68.60 1.67 47.40 16 21 H -0.28 -13.09 6.54 99.48 0.65 -12.44 16 22 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 23 H -0.27 -12.76 6.62 99.48 0.66 -12.10 16 24 C 0.10 3.66 6.72 86.35 0.58 4.24 16 25 C 0.05 1.35 6.76 72.07 0.49 1.84 16 26 O -0.37 -11.70 10.21 -148.97 -1.52 -13.22 16 27 O -0.19 -4.36 8.07 -7.02 -0.06 -4.42 16 28 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 2.05 6.47 -2.38 -0.02 2.04 16 34 H 0.09 2.21 6.24 -2.39 -0.01 2.20 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 2.45 7.86 -2.39 -0.02 2.43 16 37 H 0.10 3.01 5.98 -2.39 -0.01 2.99 16 38 H 0.09 2.79 8.06 -2.39 -0.02 2.77 16 39 H 0.08 2.63 7.79 -2.39 -0.02 2.61 16 40 H 0.03 1.34 6.85 -2.39 -0.02 1.32 16 41 H 0.06 2.90 4.46 -2.39 -0.01 2.89 16 42 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 43 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 2.65 7.96 -2.38 -0.02 2.63 16 45 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.06 1.63 6.13 -2.39 -0.01 1.62 16 Total: -1.00 -71.42 360.11 0.52 -70.90 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.90 Total: 13.04 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 7.20 Total: 28.86 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -7.60 Total: -123.19 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.64 Total: -37.02 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.67 Total: 47.40 kcal Total: -71.42 0.52 -70.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972317216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.077 kcal (2) G-P(sol) polarization free energy of solvation -71.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds