Wall clock time and date at job start Tue Mar 31 2020 20:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50695 * 109.46926 * 2 1 4 4 C 1.38359 * 120.26963 * 90.00270 * 3 2 1 5 5 N 1.31878 * 121.18247 * 179.97438 * 4 3 2 6 6 C 1.32235 * 121.80421 * 359.97438 * 5 4 3 7 7 O 1.35431 * 119.80054 * 180.02562 * 6 5 4 8 8 C 1.40278 * 120.39942 * 0.02562 * 6 5 4 9 9 C 1.47525 * 120.59578 * 179.97438 * 8 6 5 10 10 O 1.21588 * 120.00064 * 359.97438 * 9 8 6 11 11 N 1.34783 * 119.99822 * 180.02562 * 9 8 6 12 12 C 1.46501 * 119.99965 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47195 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.51228 * 304.90238 * 13 12 11 15 15 C 1.52874 * 109.62721 * 184.90811 * 13 12 11 16 16 N 1.47146 * 108.61038 * 187.90024 * 15 13 12 17 17 C 1.36938 * 120.98166 * 230.49961 * 16 15 13 18 18 H 1.08000 * 120.00437 * 26.46046 * 17 16 15 19 19 C 1.38817 * 120.00106 * 206.45559 * 17 16 15 20 20 N 1.31620 * 119.99788 * 16.42248 * 19 17 16 21 21 Si 1.86802 * 119.99867 * 196.14101 * 19 17 16 22 22 H 1.48493 * 109.47220 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46793 * 120.00703 * 21 19 17 24 24 H 1.48501 * 109.47003 * 240.00077 * 21 19 17 25 25 C 1.47152 * 118.03553 * 50.22601 * 16 15 13 26 26 C 1.53291 * 108.38463 * 309.71610 * 25 16 15 27 27 O 1.42958 * 109.22268 * 52.30270 * 26 25 16 28 28 C 1.38341 * 120.27383 * 270.25813 * 3 2 1 29 29 H 1.08999 * 109.47003 * 59.99857 * 1 2 3 30 30 H 1.09002 * 109.46538 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46656 * 299.99533 * 1 2 3 32 32 H 1.09001 * 109.46776 * 239.99934 * 2 1 3 33 33 H 1.08999 * 109.47003 * 120.00143 * 2 1 3 34 34 H 1.08000 * 119.40764 * 0.02562 * 4 3 2 35 35 H 0.96702 * 114.00035 * 269.98147 * 7 6 5 36 36 H 0.97002 * 119.99921 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.46907 * 59.99826 * 12 11 9 38 38 H 1.08995 * 109.47254 * 300.00014 * 12 11 9 39 39 H 1.09004 * 109.61801 * 68.08073 * 15 13 12 40 40 H 1.09002 * 109.52448 * 307.66775 * 15 13 12 41 41 H 0.96997 * 119.99644 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.68009 * 69.44637 * 25 16 15 43 43 H 1.08998 * 109.67837 * 189.95158 * 25 16 15 44 44 H 1.09002 * 109.50962 * 172.22809 * 26 25 16 45 45 H 1.08996 * 109.51452 * 292.32644 * 26 25 16 46 46 H 1.08001 * 120.82200 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2649 2.0783 1.1950 5 7 2.7048 3.3214 1.2160 6 6 2.9440 3.9949 0.1034 7 8 3.3957 5.2698 0.1723 8 6 2.7326 3.3968 -1.1478 9 6 2.9974 4.1444 -2.3917 10 8 3.4022 5.2897 -2.3382 11 7 2.7896 3.5582 -3.5874 12 6 3.0520 4.3008 -4.8228 13 6 2.7380 3.4125 -6.0282 14 1 3.3033 2.4836 -5.9531 15 6 3.1255 4.1391 -7.3162 16 7 2.6429 3.3526 -8.4624 17 6 3.4783 3.0319 -9.4990 18 1 4.5427 2.9580 -9.3318 19 6 2.9570 2.8016 -10.7648 20 7 1.7353 3.1961 -11.0552 21 14 3.9921 1.9388 -12.0584 22 1 5.3212 1.6044 -11.4867 23 1 3.3100 0.6913 -12.4869 24 1 4.1678 2.8343 -13.2299 25 6 1.2378 2.9156 -8.4589 26 6 0.9437 2.2440 -7.1127 27 8 1.3390 3.1193 -6.0537 28 6 2.2597 2.0801 -1.1947 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.0836 1.5641 2.1272 35 1 2.6943 5.9351 0.1917 36 1 2.4662 2.6446 -3.6301 37 1 4.1007 4.5964 -4.8531 38 1 2.4228 5.1902 -4.8527 39 1 4.2098 4.2374 -7.3690 40 1 2.6657 5.1273 -7.3295 41 1 1.3712 3.0355 -11.9397 42 1 0.5847 3.7785 -8.5893 43 1 1.0724 2.2047 -9.2684 44 1 -0.1236 2.0369 -7.0347 45 1 1.5018 1.3105 -7.0419 46 1 2.0813 1.5895 -2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035561412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:50 Heat of formation + Delta-G solvation = -90.017992 kcal Electronic energy + Delta-G solvation = -28784.910310 eV Core-core repulsion = 24674.553103 eV Total energy + Delta-G solvation = -4110.357207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.98431 -40.54322 -39.78846 -38.37873 -36.51345 -35.81252 -35.19140 -33.81589 -33.23110 -32.07945 -30.07627 -29.24050 -27.37800 -25.65333 -25.00858 -24.92999 -23.63569 -22.65988 -21.79951 -21.10943 -19.93337 -18.94750 -18.49567 -18.30182 -17.54639 -17.08915 -16.98580 -16.74856 -16.14143 -16.00286 -15.78414 -15.49646 -15.40777 -15.02641 -14.96260 -14.73292 -14.63248 -14.51552 -14.08433 -13.77226 -13.66178 -13.23057 -13.09833 -13.02258 -12.80618 -12.72774 -12.51942 -12.33444 -12.17373 -12.06125 -11.88443 -11.81297 -11.37227 -11.23687 -11.01005 -10.81437 -10.58001 -10.45972 -10.21579 -9.78879 -8.76428 -7.92402 -5.40202 -0.50629 0.01563 1.45628 1.47777 1.58219 1.75424 1.95537 2.46717 2.48018 2.72294 2.77436 3.23056 3.41962 3.47855 3.63632 3.69423 3.83010 3.96635 4.03828 4.14228 4.24779 4.29116 4.47138 4.51062 4.52162 4.54914 4.61142 4.68916 4.70957 4.75845 4.84218 4.89399 4.93773 5.04835 5.19559 5.23495 5.28219 5.34948 5.39010 5.51261 5.55249 5.61002 6.24318 6.31708 6.39400 6.53138 6.79177 7.05465 7.09458 7.73157 8.26526 9.13868 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.002433 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.549814 B =11504.430948 C =12455.145939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C -0.142 4.142 4 C 0.150 3.850 5 N -0.527 5.527 6 C 0.344 3.656 7 O -0.481 6.481 8 C -0.213 4.213 9 C 0.560 3.440 10 O -0.560 6.560 11 N -0.705 5.705 12 C 0.142 3.858 13 C 0.080 3.920 14 H 0.072 0.928 15 C 0.116 3.884 16 N -0.613 5.613 17 C -0.265 4.265 18 H 0.072 0.928 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.287 1.287 24 H -0.294 1.294 25 C 0.142 3.858 26 C 0.054 3.946 27 O -0.389 6.389 28 C -0.023 4.023 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.196 0.804 35 H 0.416 0.584 36 H 0.412 0.588 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.017 0.983 41 H 0.252 0.748 42 H -0.002 1.002 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.054 0.946 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.068 -9.120 24.407 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.144 4.144 4 C -0.008 4.008 5 N -0.245 5.245 6 C 0.165 3.835 7 O -0.290 6.290 8 C -0.220 4.220 9 C 0.347 3.653 10 O -0.440 6.440 11 N -0.357 5.357 12 C 0.018 3.982 13 C 0.021 3.979 14 H 0.090 0.910 15 C -0.010 4.010 16 N -0.338 5.338 17 C -0.395 4.395 18 H 0.090 0.910 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.799 3.201 22 H -0.189 1.189 23 H -0.213 1.213 24 H -0.222 1.222 25 C 0.017 3.983 26 C -0.023 4.023 27 O -0.308 6.308 28 C -0.049 4.049 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.213 0.787 35 H 0.277 0.723 36 H 0.250 0.750 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.035 0.965 41 H 0.061 0.939 42 H 0.016 0.984 43 H 0.086 0.914 44 H 0.128 0.872 45 H 0.072 0.928 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.260 -7.986 25.148 26.483 hybrid contribution -0.203 -0.316 -2.291 2.322 sum -2.463 -8.302 22.857 24.443 Atomic orbital electron populations 1.21798 0.94120 1.02827 1.02046 1.20569 0.96373 0.89227 1.05189 1.21171 1.00961 0.99543 0.92689 1.23292 0.89950 0.87843 0.99671 1.67376 1.14786 1.11266 1.31113 1.19343 0.90019 0.87163 0.86948 1.84665 1.36394 1.12517 1.95431 1.21002 1.09618 0.97932 0.93447 1.18122 0.77558 0.86009 0.83622 1.90797 1.46789 1.18814 1.87589 1.45678 1.67289 1.18189 1.04589 1.21214 1.01689 0.94354 0.80973 1.22547 0.83306 0.98162 0.93929 0.91044 1.21511 0.98923 0.93251 0.87353 1.44336 1.08528 1.60838 1.20064 1.19576 0.90926 1.41197 0.87782 0.90989 1.25834 0.98212 1.01639 0.98858 1.70194 1.17808 1.49190 1.20979 0.85156 0.78622 0.77708 0.78629 1.18929 1.21331 1.22162 1.21318 0.84303 0.96797 0.95903 1.23163 1.00670 0.91844 0.86658 1.87806 1.23746 1.68361 1.50889 1.21937 0.91313 0.91007 1.00672 0.93255 0.90879 0.92384 0.89461 0.88349 0.78681 0.72291 0.75050 0.89324 0.91634 0.90993 0.96501 0.93933 0.98422 0.91446 0.87216 0.92795 0.81921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.90 71.99 0.71 -0.25 16 2 C -0.08 -0.44 6.08 29.85 0.18 -0.26 16 3 C -0.14 -1.65 5.14 -19.81 -0.10 -1.75 16 4 C 0.15 2.04 10.84 84.71 0.92 2.96 16 5 N -0.53 -11.20 10.37 -308.00 -3.19 -14.40 16 6 C 0.34 8.36 7.77 85.13 0.66 9.02 16 7 O -0.48 -12.49 11.66 -66.45 -0.77 -13.26 16 8 C -0.21 -4.76 5.90 -19.91 -0.12 -4.88 16 9 C 0.56 15.23 7.77 86.69 0.67 15.91 16 10 O -0.56 -19.29 15.19 16.82 0.26 -19.04 16 11 N -0.71 -16.94 5.46 -466.28 -2.54 -19.49 16 12 C 0.14 3.99 5.35 86.38 0.46 4.45 16 13 C 0.08 2.54 2.80 30.55 0.09 2.63 16 14 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 15 C 0.12 4.67 6.00 86.21 0.52 5.19 16 16 N -0.61 -30.07 3.05 -698.37 -2.13 -32.20 16 17 C -0.27 -14.15 9.65 84.03 0.81 -13.34 16 18 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 19 C -0.05 -2.72 4.95 84.86 0.42 -2.30 16 20 N -0.94 -54.20 11.15 21.65 0.24 -53.96 16 21 Si 0.97 43.52 29.58 68.60 2.03 45.55 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 25 C 0.14 6.65 5.44 86.35 0.47 7.12 16 26 C 0.05 1.88 6.98 72.08 0.50 2.38 16 27 O -0.39 -13.04 10.33 -148.98 -1.54 -14.58 16 28 C -0.02 -0.35 9.31 22.72 0.21 -0.14 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.09 0.42 8.09 -2.39 -0.02 0.40 16 33 H 0.10 0.25 8.09 -2.39 -0.02 0.23 16 34 H 0.20 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.42 7.58 9.06 -74.06 -0.67 6.91 16 36 H 0.41 7.82 6.57 -92.71 -0.61 7.21 16 37 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.07 2.74 7.96 -2.38 -0.02 2.73 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.07 3.50 6.16 -2.39 -0.01 3.48 16 44 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.16 1.69 6.52 -2.91 -0.02 1.67 16 Total: -1.00 -74.37 380.11 -1.51 -75.88 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -0.26 Total: 18.76 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 6.41 Total: 26.74 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -7.63 Total: -120.05 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -2.06 Total: -46.88 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -74.37 -1.51 -75.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035561412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.136 kcal (2) G-P(sol) polarization free energy of solvation -74.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds