Wall clock time and date at job start Tue Mar 31 2020 20:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.47199 * 2 1 4 4 C 1.38361 * 120.27227 * 269.97930 * 3 2 1 5 5 N 1.31882 * 121.18496 * 179.74969 * 4 3 2 6 6 C 1.32235 * 121.80282 * 0.55879 * 5 4 3 7 7 O 1.35417 * 119.80502 * 179.71473 * 6 5 4 8 8 C 1.40291 * 120.39837 * 359.44121 * 6 5 4 9 9 C 1.47513 * 120.59733 * 180.24481 * 8 6 5 10 10 O 1.21587 * 120.00146 * 0.02562 * 9 8 6 11 11 N 1.34776 * 120.00247 * 180.02562 * 9 8 6 12 12 C 1.46499 * 120.00734 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47425 * 180.02562 * 12 11 9 14 14 H 1.08993 * 109.51509 * 60.00304 * 13 12 11 15 15 C 1.53307 * 109.50934 * 180.09855 * 13 12 11 16 16 N 1.47151 * 108.37838 * 172.22304 * 15 13 12 17 17 C 1.36943 * 120.97886 * 129.48917 * 16 15 13 18 18 H 1.07998 * 120.00416 * 206.22056 * 17 16 15 19 19 C 1.38812 * 119.99866 * 26.21787 * 17 16 15 20 20 N 1.31622 * 119.99820 * 16.91834 * 19 17 16 21 21 Si 1.86795 * 120.00099 * 196.91994 * 19 17 16 22 22 H 1.48497 * 109.47409 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47479 * 120.00117 * 21 19 17 24 24 H 1.48508 * 109.47336 * 239.99855 * 21 19 17 25 25 C 1.47147 * 118.04077 * 309.46774 * 16 15 13 26 26 C 1.53291 * 108.38586 * 50.53487 * 25 16 15 27 27 O 1.42953 * 109.26349 * 307.72458 * 26 25 16 28 28 C 1.38336 * 120.27258 * 89.99901 * 3 2 1 29 29 H 1.09001 * 109.47260 * 300.00036 * 1 2 3 30 30 H 1.08997 * 109.46891 * 59.99971 * 1 2 3 31 31 H 1.08998 * 109.47101 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47260 * 239.99964 * 2 1 3 33 33 H 1.08997 * 109.46891 * 120.00029 * 2 1 3 34 34 H 1.08000 * 119.40275 * 359.97438 * 4 3 2 35 35 H 0.96697 * 114.00572 * 269.73468 * 7 6 5 36 36 H 0.97003 * 119.99533 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.46493 * 300.00583 * 12 11 9 38 38 H 1.09001 * 109.46706 * 59.99379 * 12 11 9 39 39 H 1.08995 * 109.67740 * 291.94757 * 15 13 12 40 40 H 1.09001 * 109.67648 * 52.46702 * 15 13 12 41 41 H 0.97004 * 119.99475 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.68145 * 170.26359 * 25 16 15 43 43 H 1.08998 * 109.68031 * 290.77405 * 25 16 15 44 44 H 1.08999 * 109.51251 * 67.62238 * 26 25 16 45 45 H 1.09002 * 109.51319 * 187.77279 * 26 25 16 46 46 H 1.08003 * 120.82450 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2653 2.0782 -1.1949 5 7 2.7002 3.3231 -1.2160 6 6 2.9435 3.9951 -0.1034 7 8 3.3948 5.2700 -0.1722 8 6 2.7316 3.3972 1.1479 9 6 2.9965 4.1446 2.3917 10 8 3.4019 5.2897 2.3383 11 7 2.7892 3.5583 3.5874 12 6 3.0517 4.3007 4.8228 13 6 2.7383 3.4122 6.0282 14 1 3.3678 2.5229 5.9986 15 6 3.0104 4.1891 7.3215 16 7 2.5267 3.3860 8.4557 17 6 3.3288 3.1401 9.5381 18 1 3.1696 2.2567 10.1386 19 6 4.3465 4.0263 9.8634 20 7 4.3436 5.2439 9.3635 21 14 5.7201 3.4908 11.0105 22 1 5.4929 2.0853 11.4326 23 1 7.0225 3.5918 10.3043 24 1 5.7366 4.3700 12.2073 25 6 1.1557 2.8554 8.3928 26 6 0.9740 2.1436 7.0474 27 8 1.3627 3.0250 5.9912 28 6 2.2648 2.0782 1.1947 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0842 1.5638 -2.1272 35 1 4.3586 5.3456 -0.1921 36 1 2.4662 2.6446 3.6300 37 1 4.1004 4.5967 4.8528 38 1 2.4222 5.1900 4.8529 39 1 4.0810 4.3646 7.4259 40 1 2.4829 5.1427 7.2947 41 1 5.0546 5.8633 9.5912 42 1 0.9982 2.1478 9.2069 43 1 0.4410 3.6743 8.4749 44 1 1.5965 1.2491 7.0218 45 1 -0.0720 1.8638 6.9219 46 1 2.0912 1.5859 2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035561414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:54 Heat of formation + Delta-G solvation = -90.045957 kcal Electronic energy + Delta-G solvation = -28969.552421 eV Core-core repulsion = 24859.194002 eV Total energy + Delta-G solvation = -4110.358420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98975 -40.53719 -39.78287 -38.38840 -36.47189 -35.87161 -35.19190 -33.76665 -33.23410 -32.15076 -30.07597 -29.09995 -27.46118 -25.64941 -25.05112 -24.96725 -23.56147 -22.66093 -21.75737 -21.15265 -19.94246 -18.97093 -18.51749 -18.26819 -17.52644 -17.13099 -17.07130 -16.60304 -16.14615 -16.01254 -15.85024 -15.52197 -15.43384 -15.05714 -14.82831 -14.70825 -14.59735 -14.35429 -14.15358 -13.98460 -13.74751 -13.18525 -13.02686 -13.01415 -12.79637 -12.71001 -12.51708 -12.33903 -12.18411 -12.06953 -11.89079 -11.80673 -11.35005 -11.23810 -11.01533 -10.82811 -10.57046 -10.46384 -10.22897 -9.79645 -8.76836 -7.92295 -5.39879 -0.50933 0.01298 1.45387 1.47581 1.57970 1.74196 1.94631 2.46369 2.47705 2.73459 2.76847 3.22437 3.41948 3.49373 3.63527 3.69289 3.83405 4.01221 4.05379 4.15334 4.25339 4.28994 4.44546 4.49915 4.52137 4.55562 4.58812 4.66771 4.70099 4.80873 4.84418 4.93412 4.96588 5.06517 5.19584 5.22222 5.26756 5.35333 5.39256 5.51693 5.51994 5.59714 6.25149 6.31488 6.39643 6.52921 6.78996 7.04380 7.09771 7.73448 8.26877 9.13690 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.002668 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.088878 B =10493.708806 C =11518.077727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 C -0.141 4.141 4 C 0.150 3.850 5 N -0.526 5.526 6 C 0.344 3.656 7 O -0.481 6.481 8 C -0.213 4.213 9 C 0.557 3.443 10 O -0.563 6.563 11 N -0.702 5.702 12 C 0.144 3.856 13 C 0.077 3.923 14 H 0.069 0.931 15 C 0.159 3.841 16 N -0.614 5.614 17 C -0.264 4.264 18 H 0.075 0.925 19 C -0.052 4.052 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.262 1.262 23 H -0.289 1.289 24 H -0.295 1.295 25 C 0.100 3.900 26 C 0.057 3.943 27 O -0.390 6.390 28 C -0.023 4.023 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.198 0.802 35 H 0.416 0.584 36 H 0.413 0.587 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.068 0.932 40 H -0.002 1.002 41 H 0.251 0.749 42 H 0.073 0.927 43 H 0.013 0.987 44 H 0.058 0.942 45 H 0.122 0.878 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 -15.377 -20.584 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.143 4.143 4 C -0.007 4.007 5 N -0.245 5.245 6 C 0.165 3.835 7 O -0.291 6.291 8 C -0.219 4.219 9 C 0.344 3.656 10 O -0.442 6.442 11 N -0.354 5.354 12 C 0.019 3.981 13 C 0.018 3.982 14 H 0.087 0.913 15 C 0.032 3.968 16 N -0.339 5.339 17 C -0.394 4.394 18 H 0.093 0.907 19 C -0.247 4.247 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.187 1.187 23 H -0.216 1.216 24 H -0.222 1.222 25 C -0.025 4.025 26 C -0.020 4.020 27 O -0.310 6.310 28 C -0.049 4.049 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.215 0.785 35 H 0.277 0.723 36 H 0.251 0.749 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.016 0.984 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.140 0.860 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.738 -13.755 -21.429 26.102 hybrid contribution 1.162 -0.036 2.041 2.348 sum -4.576 -13.790 -19.389 24.229 Atomic orbital electron populations 1.21802 0.94237 1.02871 1.01949 1.20564 0.96228 0.89119 1.05334 1.21184 1.00704 0.99836 0.92584 1.23322 0.90039 0.87661 0.99724 1.67379 1.15923 1.10195 1.30990 1.19349 0.92783 0.84411 0.86971 1.84667 1.29068 1.19922 1.95428 1.20990 1.10776 0.96927 0.93254 1.18210 0.77681 0.85958 0.83728 1.90801 1.47050 1.18774 1.87616 1.45637 1.67240 1.18117 1.04405 1.21138 1.01091 0.94393 0.81433 1.22747 0.83782 0.97355 0.94334 0.91316 1.21081 0.99634 0.91146 0.84908 1.44367 1.10524 1.61410 1.17587 1.19588 1.10355 1.03559 1.05876 0.90698 1.25857 1.03296 0.94613 1.00963 1.70194 1.33873 1.05011 1.49114 0.85169 0.79013 0.78123 0.77899 1.18656 1.21587 1.22182 1.21840 0.85858 0.96764 0.98017 1.23092 1.01460 0.91362 0.86095 1.87792 1.26023 1.67339 1.49805 1.21942 0.91335 0.90847 1.00758 0.93366 0.92578 0.90658 0.88183 0.89295 0.78549 0.72297 0.74923 0.90295 0.92420 0.91416 0.98391 0.93974 0.90860 0.96874 0.92409 0.86037 0.81863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 71.98 0.71 -0.32 16 2 C -0.07 -0.44 6.08 29.85 0.18 -0.26 16 3 C -0.14 -1.73 5.14 -19.81 -0.10 -1.83 16 4 C 0.15 2.15 10.84 84.71 0.92 3.07 16 5 N -0.53 -11.80 10.37 -308.00 -3.19 -14.99 16 6 C 0.34 8.93 7.77 85.13 0.66 9.59 16 7 O -0.48 -13.50 11.66 -66.30 -0.77 -14.28 16 8 C -0.21 -5.15 5.90 -19.91 -0.12 -5.27 16 9 C 0.56 16.87 7.77 86.69 0.67 17.55 16 10 O -0.56 -21.50 15.19 16.83 0.26 -21.24 16 11 N -0.70 -19.25 5.40 -466.30 -2.52 -21.77 16 12 C 0.14 4.87 5.37 86.38 0.46 5.33 16 13 C 0.08 2.78 2.86 30.70 0.09 2.87 16 14 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 15 C 0.16 7.56 4.73 86.36 0.41 7.97 16 16 N -0.61 -30.12 3.05 -697.55 -2.13 -32.24 16 17 C -0.26 -14.05 9.65 84.03 0.81 -13.24 16 18 H 0.08 3.82 7.88 -2.91 -0.02 3.80 16 19 C -0.05 -2.83 4.95 84.86 0.42 -2.41 16 20 N -0.94 -54.90 11.14 21.65 0.24 -54.66 16 21 Si 0.97 43.73 29.59 68.60 2.03 45.76 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 25 C 0.10 3.95 6.74 86.35 0.58 4.53 16 26 C 0.06 1.73 6.98 72.08 0.50 2.23 16 27 O -0.39 -13.12 10.14 -148.98 -1.51 -14.63 16 28 C -0.02 -0.37 9.31 22.72 0.21 -0.16 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.10 0.23 8.09 -2.39 -0.02 0.21 16 33 H 0.09 0.41 8.09 -2.39 -0.02 0.39 16 34 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.42 8.35 9.06 -74.06 -0.67 7.68 16 36 H 0.41 8.84 6.45 -92.71 -0.60 8.24 16 37 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.07 3.60 6.14 -2.39 -0.01 3.58 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 42 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 43 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 46 H 0.16 1.86 6.52 -2.91 -0.02 1.84 16 Total: -1.00 -76.04 379.83 -1.43 -77.48 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.25 Total: 20.94 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: 6.42 Total: 29.63 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -7.60 Total: -123.66 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -2.03 Total: -50.15 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -76.04 -1.43 -77.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035561414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.570 kcal (2) G-P(sol) polarization free energy of solvation -76.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds