Wall clock time and date at job start Tue Mar 31 2020 20:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47224 * 2 1 4 4 C 1.38014 * 119.51565 * 125.00302 * 3 2 1 5 5 C 1.39925 * 119.13253 * 180.02562 * 4 3 2 6 6 C 1.48161 * 120.89108 * 180.02562 * 5 4 3 7 7 O 1.21516 * 120.00074 * 21.99158 * 6 5 4 8 8 N 1.34778 * 120.00248 * 201.98620 * 6 5 4 9 9 C 1.46505 * 119.99429 * 5.19537 * 8 6 5 10 10 C 1.46493 * 120.00347 * 185.19566 * 8 6 5 11 11 H 1.08997 * 110.78130 * 3.23891 * 10 8 6 12 12 C 1.54327 * 110.72186 * 126.47692 * 10 8 6 13 13 N 1.47023 * 107.26998 * 140.55612 * 12 10 8 14 14 C 1.36933 * 125.64856 * 181.09948 * 13 12 10 15 15 H 1.08006 * 120.00119 * 173.76165 * 14 13 12 16 16 C 1.38812 * 119.99963 * 353.75468 * 14 13 12 17 17 N 1.31619 * 120.00119 * 7.02173 * 16 14 13 18 18 Si 1.86804 * 120.00198 * 187.02231 * 16 14 13 19 19 H 1.48504 * 109.47117 * 94.98364 * 18 16 14 20 20 H 1.48492 * 109.47038 * 214.98309 * 18 16 14 21 21 H 1.48502 * 109.46842 * 334.98655 * 18 16 14 22 22 C 1.47428 * 108.70674 * 1.05916 * 13 12 10 23 23 C 1.54912 * 104.83094 * 335.87348 * 22 13 12 24 24 H 1.09005 * 111.00511 * 278.89879 * 23 22 13 25 25 O 1.42892 * 111.00493 * 155.08226 * 23 22 13 26 26 C 1.39608 * 118.21848 * 0.26670 * 5 4 3 27 27 C 1.38858 * 118.94532 * 359.48742 * 26 5 4 28 28 O 1.35689 * 119.61969 * 180.27405 * 27 26 5 29 29 N 1.31886 * 119.50652 * 305.01846 * 3 2 1 30 30 H 1.08998 * 109.47554 * 60.00010 * 1 2 3 31 31 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46969 * 300.00194 * 1 2 3 33 33 H 1.08996 * 109.46746 * 239.99418 * 2 1 3 34 34 H 1.09004 * 109.47119 * 119.99987 * 2 1 3 35 35 H 1.08005 * 120.43349 * 359.97151 * 4 3 2 36 36 H 1.09002 * 109.46989 * 264.15348 * 9 8 6 37 37 H 1.08994 * 109.47083 * 24.15380 * 9 8 6 38 38 H 1.09003 * 109.46822 * 144.15658 * 9 8 6 39 39 H 1.09002 * 109.87874 * 21.14400 * 12 10 8 40 40 H 1.08997 * 110.01021 * 260.04444 * 12 10 8 41 41 H 0.96994 * 120.00649 * 180.02562 * 17 16 14 42 42 H 1.09000 * 110.37030 * 217.03609 * 22 13 12 43 43 H 1.08999 * 110.36861 * 94.70943 * 22 13 12 44 44 H 0.96700 * 114.00634 * 61.45469 * 25 23 22 45 45 H 1.08001 * 120.52878 * 179.72800 * 26 5 4 46 46 H 0.96699 * 113.99699 * 270.24921 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9085 1.8322 0.9838 5 6 3.3695 3.1533 0.9764 6 6 4.3111 3.6362 2.0134 7 8 4.9980 2.8435 2.6269 8 7 4.4060 4.9547 2.2762 9 6 3.4992 5.8995 1.6194 10 6 5.4159 5.4430 3.2184 11 1 6.0422 4.6244 3.5726 12 6 6.2767 6.5487 2.5717 13 7 6.5178 7.5716 3.5999 14 6 7.2241 8.7311 3.4219 15 1 7.2609 9.4676 4.2111 16 6 7.8929 8.9600 2.2272 17 7 7.7370 8.1314 1.2165 18 14 9.0141 10.4440 2.0539 19 1 10.4133 10.0447 2.3506 20 1 8.9322 10.9668 0.6664 21 1 8.5881 11.5002 3.0069 22 6 5.8724 7.1426 4.8541 23 6 4.7456 6.1767 4.4100 24 1 3.8640 6.7286 4.0838 25 8 4.4151 5.2603 5.4553 26 6 2.9143 4.0057 -0.0312 27 6 2.0367 3.5091 -0.9859 28 8 1.5901 4.3241 -1.9746 29 7 1.6279 2.2528 -0.9400 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8932 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.2335 1.1436 1.7498 36 1 3.9863 6.3183 0.7388 37 1 2.5891 5.3805 1.3189 38 1 3.2476 6.7028 2.3120 39 1 5.7432 6.9886 1.7291 40 1 7.2255 6.1326 2.2331 41 1 8.2046 8.2910 0.3819 42 1 5.4517 8.0013 5.3772 43 1 6.5884 6.6230 5.4908 44 1 4.0835 5.6833 6.2592 45 1 3.2426 5.0339 -0.0699 46 1 0.7783 4.8011 -1.7544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047460484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:05 Heat of formation + Delta-G solvation = -30.494214 kcal Electronic energy + Delta-G solvation = -29635.040012 eV Core-core repulsion = 25527.263950 eV Total energy + Delta-G solvation = -4107.776062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.13737 -39.64718 -37.97972 -37.38984 -35.51876 -35.04129 -34.01334 -32.47870 -31.79248 -29.84835 -28.68281 -27.28602 -27.05274 -25.19015 -24.48781 -23.66179 -22.40404 -20.64377 -20.50695 -19.29904 -18.62652 -17.51633 -17.13819 -16.82710 -16.59932 -16.13994 -15.87266 -15.48886 -14.99633 -14.77379 -14.50021 -14.38342 -14.08507 -13.87662 -13.47741 -13.27467 -13.06130 -12.93618 -12.69760 -12.56115 -12.22877 -11.99822 -11.93011 -11.73276 -11.62650 -11.44226 -11.25802 -11.12709 -10.86486 -10.83203 -10.29996 -10.22572 -10.11597 -9.95031 -9.86050 -9.60609 -9.38867 -8.98522 -8.71827 -8.36475 -7.00244 -5.85654 -3.20134 0.58767 0.76650 2.77556 2.98905 3.33726 3.35174 3.39274 3.41234 3.56030 4.20352 4.28133 4.36245 4.51381 4.75513 4.77614 4.89966 4.98934 5.06333 5.15940 5.21621 5.26164 5.34247 5.37104 5.48747 5.50978 5.53018 5.58790 5.64120 5.66769 5.80242 5.84802 5.88072 5.99921 6.05999 6.15053 6.23565 6.38574 6.57412 6.66578 7.25300 7.27703 7.40353 7.54804 7.64222 7.68247 7.92053 8.08416 8.22400 9.05552 9.66131 10.29527 11.26295 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.003052 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.865393 B = 9171.398619 C =10238.271747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C 0.147 3.853 4 C -0.126 4.126 5 C -0.060 4.060 6 C 0.557 3.443 7 O -0.526 6.526 8 N -0.584 5.584 9 C 0.059 3.941 10 C 0.122 3.878 11 H 0.110 0.890 12 C 0.174 3.826 13 N -0.600 5.600 14 C -0.234 4.234 15 H 0.081 0.919 16 C -0.004 4.004 17 N -0.919 5.919 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.107 3.893 23 C 0.074 3.926 24 H 0.065 0.935 25 O -0.559 6.559 26 C -0.178 4.178 27 C 0.309 3.691 28 O -0.477 6.477 29 N -0.489 5.489 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.149 0.851 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.255 0.745 42 H 0.045 0.955 43 H 0.033 0.967 44 H 0.371 0.629 45 H 0.170 0.830 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.408 -10.022 -0.786 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C 0.010 3.990 4 C -0.147 4.147 5 C -0.071 4.071 6 C 0.344 3.656 7 O -0.402 6.402 8 N -0.315 5.315 9 C -0.084 4.084 10 C 0.019 3.981 11 H 0.128 0.872 12 C 0.049 3.951 13 N -0.329 5.329 14 C -0.362 4.362 15 H 0.099 0.901 16 C -0.201 4.201 17 N -0.566 5.566 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.206 1.206 22 C -0.020 4.020 23 C 0.014 3.986 24 H 0.083 0.917 25 O -0.363 6.363 26 C -0.199 4.199 27 C 0.130 3.870 28 O -0.284 6.284 29 N -0.209 5.209 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.167 0.833 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.218 0.782 45 H 0.187 0.813 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -15.790 -11.181 -2.033 19.454 hybrid contribution 0.634 1.934 0.932 2.239 sum -15.156 -9.247 -1.100 17.788 Atomic orbital electron populations 1.21676 0.93984 1.01817 1.02637 1.20527 0.97108 0.89816 1.03629 1.20936 0.93087 0.95811 0.89190 1.22105 0.96900 0.95384 1.00285 1.20310 0.96693 0.94340 0.95719 1.18098 0.82700 0.82424 0.82335 1.90775 1.44908 1.54304 1.50261 1.47538 1.34568 1.05644 1.43726 1.22475 0.93161 0.93858 0.98860 1.22643 0.89077 0.99244 0.87175 0.87212 1.21478 0.96709 0.85979 0.90976 1.44237 1.62457 1.20931 1.05238 1.19054 1.23100 0.93857 1.00151 0.90097 1.24847 1.00094 0.99012 0.96099 1.69921 1.45402 1.38073 1.03178 0.86086 0.80975 0.81555 0.77044 1.21472 1.21679 1.20574 1.22206 0.93212 0.95523 0.91048 1.23476 0.96692 0.90343 0.88121 0.91680 1.86559 1.87358 1.36067 1.26334 1.23282 0.99795 1.03149 0.93666 1.18996 0.93921 0.87143 0.86935 1.84833 1.46657 1.58101 1.38819 1.66732 1.26008 1.04072 1.24075 0.91590 0.92216 0.92851 0.89671 0.89809 0.83310 0.90803 0.90085 0.90645 0.92583 0.92471 0.93479 0.93680 0.94967 0.78246 0.81300 0.74274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.77 37.16 0.36 -0.72 16 2 C -0.07 -0.61 6.33 -27.88 -0.18 -0.79 16 3 C 0.15 1.70 6.17 -82.65 -0.51 1.19 16 4 C -0.13 -1.60 9.27 -39.03 -0.36 -1.96 16 5 C -0.06 -0.85 5.58 -104.68 -0.58 -1.43 16 6 C 0.56 9.71 7.55 -12.18 -0.09 9.62 16 7 O -0.53 -10.84 16.04 5.35 0.09 -10.75 16 8 N -0.58 -9.90 2.89 -172.83 -0.50 -10.39 16 9 C 0.06 0.78 7.55 59.85 0.45 1.23 16 10 C 0.12 2.41 3.08 -66.09 -0.20 2.20 16 11 H 0.11 2.42 7.03 -51.93 -0.37 2.05 16 12 C 0.17 4.06 5.01 -3.06 -0.02 4.04 16 13 N -0.60 -14.63 3.39 -170.06 -0.58 -15.21 16 14 C -0.23 -6.22 10.26 -15.06 -0.15 -6.38 16 15 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 16 C 0.00 -0.10 5.48 -17.43 -0.10 -0.20 16 17 N -0.92 -25.89 10.36 55.49 0.57 -25.32 16 18 Si 0.91 21.38 29.56 -169.99 -5.02 16.36 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.11 2.12 6.96 -2.53 -0.02 2.10 16 23 C 0.07 1.30 3.99 -24.58 -0.10 1.20 16 24 H 0.07 1.06 6.35 -51.93 -0.33 0.73 16 25 O -0.56 -9.06 13.47 -35.23 -0.47 -9.53 16 26 C -0.18 -2.22 7.60 -38.84 -0.30 -2.52 16 27 C 0.31 3.77 7.74 -17.16 -0.13 3.63 16 28 O -0.48 -4.97 13.56 -18.77 -0.25 -5.22 16 29 N -0.49 -6.15 9.87 -9.59 -0.09 -6.24 16 30 H 0.07 0.56 7.94 -51.93 -0.41 0.15 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.57 7.86 -51.93 -0.41 0.17 16 35 H 0.15 1.76 7.77 -52.48 -0.41 1.36 16 36 H 0.07 1.00 6.70 -51.93 -0.35 0.65 16 37 H 0.08 0.86 4.96 -51.93 -0.26 0.60 16 38 H 0.07 0.99 6.37 -51.93 -0.33 0.66 16 39 H 0.06 1.36 5.97 -51.93 -0.31 1.05 16 40 H 0.06 1.54 7.36 -51.93 -0.38 1.16 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.37 4.14 9.11 45.56 0.42 4.55 16 45 H 0.17 1.95 4.30 -52.49 -0.23 1.73 16 46 H 0.40 2.01 9.06 45.56 0.41 2.42 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -34.66 370.47 -7.21 -41.87 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.61 Total: 7.61 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -1.92 Total: 11.23 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.60 Total: -57.16 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.64 Total: -25.51 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.66 -7.21 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047460484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.379 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds