Wall clock time and date at job start Tue Mar 31 2020 20:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47224 * 2 1 4 4 C 1.38014 * 119.51565 * 125.00302 * 3 2 1 5 5 C 1.39925 * 119.13253 * 180.02562 * 4 3 2 6 6 C 1.48161 * 120.89108 * 180.02562 * 5 4 3 7 7 O 1.21516 * 120.00074 * 21.99158 * 6 5 4 8 8 N 1.34778 * 120.00248 * 201.98620 * 6 5 4 9 9 C 1.46505 * 119.99429 * 5.19537 * 8 6 5 10 10 C 1.46493 * 120.00347 * 185.19566 * 8 6 5 11 11 H 1.08997 * 110.78130 * 3.23891 * 10 8 6 12 12 C 1.54327 * 110.72186 * 126.47692 * 10 8 6 13 13 N 1.47023 * 107.26998 * 140.55612 * 12 10 8 14 14 C 1.36933 * 125.64856 * 181.09948 * 13 12 10 15 15 H 1.08006 * 120.00119 * 173.76165 * 14 13 12 16 16 C 1.38812 * 119.99963 * 353.75468 * 14 13 12 17 17 N 1.31619 * 120.00119 * 7.02173 * 16 14 13 18 18 Si 1.86804 * 120.00198 * 187.02231 * 16 14 13 19 19 H 1.48504 * 109.47117 * 94.98364 * 18 16 14 20 20 H 1.48492 * 109.47038 * 214.98309 * 18 16 14 21 21 H 1.48502 * 109.46842 * 334.98655 * 18 16 14 22 22 C 1.47428 * 108.70674 * 1.05916 * 13 12 10 23 23 C 1.54912 * 104.83094 * 335.87348 * 22 13 12 24 24 H 1.09005 * 111.00511 * 278.89879 * 23 22 13 25 25 O 1.42892 * 111.00493 * 155.08226 * 23 22 13 26 26 C 1.39608 * 118.21848 * 0.26670 * 5 4 3 27 27 C 1.38858 * 118.94532 * 359.48742 * 26 5 4 28 28 O 1.35689 * 119.61969 * 180.27405 * 27 26 5 29 29 N 1.31886 * 119.50652 * 305.01846 * 3 2 1 30 30 H 1.08998 * 109.47554 * 60.00010 * 1 2 3 31 31 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46969 * 300.00194 * 1 2 3 33 33 H 1.08996 * 109.46746 * 239.99418 * 2 1 3 34 34 H 1.09004 * 109.47119 * 119.99987 * 2 1 3 35 35 H 1.08005 * 120.43349 * 359.97151 * 4 3 2 36 36 H 1.09002 * 109.46989 * 264.15348 * 9 8 6 37 37 H 1.08994 * 109.47083 * 24.15380 * 9 8 6 38 38 H 1.09003 * 109.46822 * 144.15658 * 9 8 6 39 39 H 1.09002 * 109.87874 * 21.14400 * 12 10 8 40 40 H 1.08997 * 110.01021 * 260.04444 * 12 10 8 41 41 H 0.96994 * 120.00649 * 180.02562 * 17 16 14 42 42 H 1.09000 * 110.37030 * 217.03609 * 22 13 12 43 43 H 1.08999 * 110.36861 * 94.70943 * 22 13 12 44 44 H 0.96700 * 114.00634 * 61.45469 * 25 23 22 45 45 H 1.08001 * 120.52878 * 179.72800 * 26 5 4 46 46 H 0.96699 * 113.99699 * 270.24921 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9085 1.8322 0.9838 5 6 3.3695 3.1533 0.9764 6 6 4.3111 3.6362 2.0134 7 8 4.9980 2.8435 2.6269 8 7 4.4060 4.9547 2.2762 9 6 3.4992 5.8995 1.6194 10 6 5.4159 5.4430 3.2184 11 1 6.0422 4.6244 3.5726 12 6 6.2767 6.5487 2.5717 13 7 6.5178 7.5716 3.5999 14 6 7.2241 8.7311 3.4219 15 1 7.2609 9.4676 4.2111 16 6 7.8929 8.9600 2.2272 17 7 7.7370 8.1314 1.2165 18 14 9.0141 10.4440 2.0539 19 1 10.4133 10.0447 2.3506 20 1 8.9322 10.9668 0.6664 21 1 8.5881 11.5002 3.0069 22 6 5.8724 7.1426 4.8541 23 6 4.7456 6.1767 4.4100 24 1 3.8640 6.7286 4.0838 25 8 4.4151 5.2603 5.4553 26 6 2.9143 4.0057 -0.0312 27 6 2.0367 3.5091 -0.9859 28 8 1.5901 4.3241 -1.9746 29 7 1.6279 2.2528 -0.9400 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8932 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.2335 1.1436 1.7498 36 1 3.9863 6.3183 0.7388 37 1 2.5891 5.3805 1.3189 38 1 3.2476 6.7028 2.3120 39 1 5.7432 6.9886 1.7291 40 1 7.2255 6.1326 2.2331 41 1 8.2046 8.2910 0.3819 42 1 5.4517 8.0013 5.3772 43 1 6.5884 6.6230 5.4908 44 1 4.0835 5.6833 6.2592 45 1 3.2426 5.0339 -0.0699 46 1 0.7783 4.8011 -1.7544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047460484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:04 Heat of formation + Delta-G solvation = -59.965531 kcal Electronic energy + Delta-G solvation = -29636.317985 eV Core-core repulsion = 25527.263950 eV Total energy + Delta-G solvation = -4109.054035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22204 -40.92867 -39.44693 -38.27320 -36.89050 -36.59497 -34.99066 -33.84283 -33.23328 -30.94677 -30.16932 -28.87508 -28.32552 -26.70776 -25.68675 -24.78362 -23.35107 -22.37179 -21.76702 -20.62136 -19.66314 -19.04014 -18.72820 -18.01786 -17.73421 -17.17774 -17.16906 -16.79562 -16.48749 -16.22226 -15.63699 -15.47224 -15.22072 -15.18730 -14.91321 -14.59810 -14.44686 -14.08911 -14.00707 -13.82939 -13.54612 -13.22654 -13.03261 -13.01272 -12.81566 -12.73593 -12.55932 -12.47929 -12.36013 -12.10514 -11.92169 -11.89485 -11.69602 -11.49117 -11.03206 -10.98997 -10.74647 -10.44727 -9.91380 -9.75872 -8.98530 -7.90374 -5.26829 -0.47428 -0.15450 1.46662 1.49227 1.56978 1.57343 1.66987 2.44198 2.47023 2.56621 3.02772 3.17899 3.30583 3.40945 3.64117 3.74323 3.81132 3.82881 3.92525 4.00637 4.08360 4.16392 4.28176 4.36606 4.43037 4.44241 4.48955 4.55228 4.67632 4.74001 4.81001 4.83132 4.90370 5.04952 5.09016 5.16291 5.20954 5.31876 5.42357 5.46200 5.48242 5.64521 6.09495 6.18364 6.56314 6.80739 6.85950 6.86350 7.02080 7.67835 8.31319 9.20140 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.003052 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.865393 B = 9171.398619 C =10238.271747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 C 0.152 3.848 4 C -0.131 4.131 5 C -0.072 4.072 6 C 0.553 3.447 7 O -0.567 6.567 8 N -0.585 5.585 9 C 0.056 3.944 10 C 0.130 3.870 11 H 0.080 0.920 12 C 0.191 3.809 13 N -0.620 5.620 14 C -0.243 4.243 15 H 0.090 0.910 16 C -0.060 4.060 17 N -0.947 5.947 18 Si 0.977 3.023 19 H -0.293 1.293 20 H -0.294 1.294 21 H -0.264 1.264 22 C 0.104 3.896 23 C 0.097 3.903 24 H 0.088 0.912 25 O -0.567 6.567 26 C -0.178 4.178 27 C 0.314 3.686 28 O -0.484 6.484 29 N -0.498 5.498 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.153 0.847 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.043 0.957 40 H 0.007 0.993 41 H 0.248 0.752 42 H 0.068 0.932 43 H 0.026 0.974 44 H 0.397 0.603 45 H 0.177 0.823 46 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.647 -9.792 -0.466 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C 0.015 3.985 4 C -0.152 4.152 5 C -0.083 4.083 6 C 0.342 3.658 7 O -0.447 6.447 8 N -0.315 5.315 9 C -0.085 4.085 10 C 0.025 3.975 11 H 0.099 0.901 12 C 0.064 3.936 13 N -0.348 5.348 14 C -0.371 4.371 15 H 0.108 0.892 16 C -0.253 4.253 17 N -0.596 5.596 18 Si 0.806 3.194 19 H -0.220 1.220 20 H -0.221 1.221 21 H -0.188 1.188 22 C -0.022 4.022 23 C 0.037 3.963 24 H 0.106 0.894 25 O -0.375 6.375 26 C -0.199 4.199 27 C 0.135 3.865 28 O -0.294 6.294 29 N -0.219 5.219 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.171 0.829 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.026 0.974 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.247 0.753 45 H 0.194 0.806 46 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -18.091 -10.914 -1.673 21.194 hybrid contribution 1.298 1.826 0.848 2.395 sum -16.793 -9.088 -0.825 19.112 Atomic orbital electron populations 1.21643 0.93152 1.02889 1.01967 1.20677 0.97733 0.87938 1.04828 1.21390 0.92056 0.96950 0.88148 1.22231 0.97195 0.94857 1.00886 1.20089 0.97088 0.95422 0.95654 1.18615 0.82628 0.82101 0.82408 1.90741 1.46694 1.55303 1.51978 1.47575 1.34222 1.06296 1.43368 1.22704 0.93523 0.93694 0.98550 1.22165 0.89641 0.97055 0.88630 0.90134 1.21077 0.94900 0.86568 0.91011 1.44490 1.62688 1.20502 1.07086 1.19454 1.22859 0.94648 1.00161 0.89214 1.25655 1.01718 1.01876 0.96094 1.70127 1.46287 1.39800 1.03347 0.85079 0.78575 0.78912 0.76867 1.22033 1.22111 1.18798 1.22381 0.93612 0.96797 0.89377 1.23153 0.96398 0.89300 0.87477 0.89450 1.86518 1.87433 1.36199 1.27326 1.23274 0.99856 1.03274 0.93480 1.19053 0.93462 0.87306 0.86691 1.84784 1.48255 1.58088 1.38274 1.66861 1.26281 1.04327 1.24420 0.92691 0.90311 0.93038 0.88966 0.88099 0.82932 0.91226 0.86954 0.89964 0.93881 0.97435 0.94248 0.91389 0.95595 0.75302 0.80613 0.71490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.77 71.98 0.70 -1.09 16 2 C -0.07 -1.09 6.33 29.85 0.19 -0.90 16 3 C 0.15 3.27 6.17 42.50 0.26 3.53 16 4 C -0.13 -3.21 9.27 22.63 0.21 -3.00 16 5 C -0.07 -2.01 5.58 -19.90 -0.11 -2.12 16 6 C 0.55 19.60 7.55 86.88 0.66 20.25 16 7 O -0.57 -24.23 16.04 -3.77 -0.06 -24.29 16 8 N -0.58 -19.96 2.89 -818.99 -2.36 -22.32 16 9 C 0.06 1.44 7.55 127.77 0.96 2.40 16 10 C 0.13 5.24 3.08 46.18 0.14 5.38 16 11 H 0.08 3.73 7.03 -2.39 -0.02 3.71 16 12 C 0.19 9.23 5.01 86.73 0.43 9.67 16 13 N -0.62 -30.49 3.39 -691.96 -2.35 -32.84 16 14 C -0.24 -12.95 10.26 84.03 0.86 -12.08 16 15 H 0.09 4.51 7.84 -2.91 -0.02 4.49 16 16 C -0.06 -3.28 5.48 84.86 0.47 -2.82 16 17 N -0.95 -55.10 10.36 21.65 0.22 -54.87 16 18 Si 0.98 44.28 29.56 68.60 2.03 46.31 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 C 0.10 4.03 6.96 86.86 0.60 4.63 16 23 C 0.10 3.29 3.99 31.99 0.13 3.41 16 24 H 0.09 2.61 6.35 -2.38 -0.02 2.60 16 25 O -0.57 -17.28 13.47 -148.98 -2.01 -19.29 16 26 C -0.18 -4.24 7.60 22.75 0.17 -4.06 16 27 C 0.31 7.12 7.74 84.79 0.66 7.78 16 28 O -0.48 -9.03 13.56 -90.08 -1.22 -10.25 16 29 N -0.50 -11.67 9.87 -297.15 -2.93 -14.61 16 30 H 0.05 0.83 7.94 -2.39 -0.02 0.82 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.10 1.15 7.86 -2.38 -0.02 1.13 16 35 H 0.15 3.56 7.77 -2.91 -0.02 3.53 16 36 H 0.07 1.87 6.70 -2.39 -0.02 1.85 16 37 H 0.11 2.18 4.96 -2.39 -0.01 2.17 16 38 H 0.08 2.00 6.37 -2.39 -0.02 1.99 16 39 H 0.04 2.18 5.97 -2.39 -0.01 2.16 16 40 H 0.01 0.43 7.36 -2.39 -0.02 0.41 16 41 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 43 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.40 7.64 9.11 -74.06 -0.67 6.97 16 45 H 0.18 3.87 4.30 -2.91 -0.01 3.86 16 46 H 0.42 3.17 9.06 -74.06 -0.67 2.49 16 Total: -1.00 -76.88 370.47 -2.64 -79.51 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.30 Total: 21.67 kcal Atomic # 6 Polarization: 24.64 SS G_CDS: 6.34 Total: 30.98 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -7.42 Total: -124.64 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -3.29 Total: -53.84 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -76.88 -2.64 -79.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047460484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.549 kcal (2) G-P(sol) polarization free energy of solvation -76.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds