Wall clock time and date at job start Tue Mar 31 2020 20:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47371 * 2 1 4 4 C 1.38020 * 119.51410 * 125.23823 * 3 2 1 5 5 C 1.39923 * 119.13501 * 180.29705 * 4 3 2 6 6 C 1.48159 * 120.89709 * 179.75341 * 5 4 3 7 7 O 1.21513 * 119.99753 * 359.71165 * 6 5 4 8 8 N 1.34781 * 120.00039 * 179.71793 * 6 5 4 9 9 C 1.46505 * 119.99723 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46730 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.71027 * 59.82108 * 10 9 8 12 12 C 1.53299 * 109.67732 * 180.35971 * 10 9 8 13 13 O 1.42970 * 109.21954 * 172.02672 * 12 10 9 14 14 C 1.42954 * 114.16399 * 297.41600 * 13 12 10 15 15 C 1.53294 * 109.22495 * 62.58266 * 14 13 12 16 16 N 1.47146 * 109.68133 * 299.28260 * 10 9 8 17 17 C 1.36935 * 120.98444 * 10.01603 * 16 10 9 18 18 H 1.07993 * 119.99907 * 328.79767 * 17 16 10 19 19 C 1.38823 * 119.99915 * 148.79331 * 17 16 10 20 20 N 1.31611 * 120.00093 * 348.99312 * 19 17 16 21 21 Si 1.86801 * 119.99837 * 168.99278 * 19 17 16 22 22 H 1.48498 * 109.46787 * 89.99894 * 21 19 17 23 23 H 1.48496 * 109.47285 * 210.00137 * 21 19 17 24 24 H 1.48503 * 109.47244 * 330.00390 * 21 19 17 25 25 C 1.39616 * 118.21029 * 359.47422 * 5 4 3 26 26 C 1.38843 * 118.95337 * 0.25392 * 25 5 4 27 27 O 1.35691 * 119.62482 * 179.97438 * 26 25 5 28 28 N 1.31880 * 119.51138 * 305.00098 * 3 2 1 29 29 H 1.08994 * 109.47542 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47169 * 300.00383 * 1 2 3 31 31 H 1.09004 * 109.47286 * 60.00100 * 1 2 3 32 32 H 1.09003 * 109.47169 * 239.99617 * 2 1 3 33 33 H 1.08997 * 109.46876 * 119.99920 * 2 1 3 34 34 H 1.08008 * 120.43298 * 0.04171 * 4 3 2 35 35 H 0.96999 * 119.99907 * 359.97438 * 8 6 5 36 36 H 1.08998 * 109.46961 * 59.99648 * 9 8 6 37 37 H 1.09003 * 109.46973 * 299.99623 * 9 8 6 38 38 H 1.08993 * 109.51336 * 52.10118 * 12 10 9 39 39 H 1.09004 * 109.51183 * 291.94584 * 12 10 9 40 40 H 1.09001 * 109.51549 * 302.65579 * 14 13 12 41 41 H 1.09001 * 109.55522 * 182.53528 * 14 13 12 42 42 H 1.09000 * 109.68406 * 187.97124 * 15 14 13 43 43 H 1.08997 * 109.71237 * 67.44255 * 15 14 13 44 44 H 0.97000 * 119.99837 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.52586 * 180.27427 * 25 5 4 46 46 H 0.96707 * 113.99607 * 90.00527 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9124 1.8308 0.9810 5 6 3.3689 3.1535 0.9771 6 6 4.3098 3.6366 2.0146 7 8 4.6912 2.8822 2.8876 8 7 4.7424 4.9128 1.9903 9 6 5.6723 5.3907 3.0167 10 6 6.0026 6.8624 2.7601 11 1 5.0886 7.4553 2.7928 12 6 6.9826 7.3650 3.8264 13 8 7.4283 8.6772 3.4749 14 6 8.1510 8.7393 2.2430 15 6 7.2309 8.3070 1.0956 16 7 6.6389 7.0048 1.4410 17 6 6.6740 5.9583 0.5585 18 1 6.7191 4.9437 0.9257 19 6 6.6515 6.2016 -0.8080 20 7 6.3798 7.4085 -1.2572 21 14 7.0068 4.8160 -2.0094 22 1 5.7383 4.1292 -2.3621 23 1 7.6265 5.3732 -3.2385 24 1 7.9382 3.8439 -1.3824 25 6 2.9186 4.0041 -0.0343 26 6 2.0377 3.5089 -0.9864 27 8 1.5910 4.3239 -1.9751 28 7 1.6283 2.2527 -0.9401 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 3.2411 1.1408 1.7442 35 1 4.4381 5.5149 1.2934 36 1 6.5884 4.8012 2.9797 37 1 5.2130 5.2870 3.9997 38 1 7.8383 6.6921 3.8805 39 1 6.4823 7.3976 4.7943 40 1 9.0111 8.0714 2.2914 41 1 8.4922 9.7602 2.0713 42 1 7.8090 8.2152 0.1761 43 1 6.4407 9.0453 0.9600 44 1 6.3644 7.5786 -2.2120 45 1 3.2506 5.0310 -0.0756 46 1 2.1442 4.3196 -2.7683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051028902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:21 Heat of formation + Delta-G solvation = -58.519038 kcal Electronic energy + Delta-G solvation = -30020.375585 eV Core-core repulsion = 25911.384275 eV Total energy + Delta-G solvation = -4108.991310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73036 -39.25726 -38.34934 -37.19397 -35.45491 -34.07622 -33.66605 -32.29271 -31.49921 -30.50564 -29.37858 -27.34130 -26.08971 -24.75365 -23.56636 -23.37238 -22.31332 -21.65083 -20.01989 -19.70596 -18.63934 -17.22148 -16.90561 -16.51409 -15.97284 -15.73044 -15.55276 -15.35682 -14.80119 -14.76878 -14.64417 -14.44114 -14.12392 -13.93595 -13.87277 -13.53742 -13.17621 -12.96142 -12.75062 -12.21392 -12.12336 -11.94542 -11.78011 -11.64688 -11.51135 -11.18077 -11.14982 -10.98512 -10.85017 -10.49996 -10.36355 -10.14850 -10.02144 -9.78880 -9.73268 -9.37255 -9.06129 -8.80411 -8.79104 -8.44867 -6.83756 -6.01660 -3.51607 0.78305 0.99575 3.02721 3.15109 3.26320 3.30308 3.41459 3.58742 3.87621 4.23083 4.42472 4.45891 4.74214 4.95747 5.04596 5.05732 5.13022 5.15381 5.21001 5.25076 5.46137 5.48377 5.64079 5.68844 5.73378 5.75840 5.79870 5.93263 5.96513 5.98407 6.08334 6.12233 6.14341 6.18252 6.25982 6.44516 6.44826 6.64978 6.88182 6.99255 7.41404 7.49438 7.58852 7.79622 7.88333 7.97072 8.18045 8.54473 8.94600 9.54869 10.14528 11.04246 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.003968 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.636004 B = 7054.142252 C = 8173.365180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C 0.142 3.858 4 C -0.128 4.128 5 C -0.061 4.061 6 C 0.550 3.450 7 O -0.550 6.550 8 N -0.682 5.682 9 C 0.134 3.866 10 C 0.124 3.876 11 H 0.043 0.957 12 C 0.057 3.943 13 O -0.392 6.392 14 C 0.035 3.965 15 C 0.144 3.856 16 N -0.592 5.592 17 C -0.259 4.259 18 H 0.073 0.927 19 C 0.012 3.988 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.286 1.286 23 H -0.287 1.287 24 H -0.278 1.278 25 C -0.150 4.150 26 C 0.312 3.688 27 O -0.479 6.479 28 N -0.489 5.489 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.416 0.584 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.030 0.970 44 H 0.257 0.743 45 H 0.152 0.848 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 -7.068 2.745 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C 0.005 3.995 4 C -0.149 4.149 5 C -0.072 4.072 6 C 0.336 3.664 7 O -0.429 6.429 8 N -0.334 5.334 9 C 0.010 3.990 10 C 0.017 3.983 11 H 0.060 0.940 12 C -0.023 4.023 13 O -0.310 6.310 14 C -0.043 4.043 15 C 0.019 3.981 16 N -0.318 5.318 17 C -0.388 4.388 18 H 0.090 0.910 19 C -0.188 4.188 20 N -0.539 5.539 21 Si 0.722 3.278 22 H -0.213 1.213 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.172 4.172 26 C 0.133 3.867 27 O -0.287 6.287 28 N -0.210 5.210 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.167 0.833 35 H 0.256 0.744 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.170 0.830 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -6.741 -7.424 3.024 10.474 hybrid contribution 1.132 -0.179 -1.219 1.673 sum -5.609 -7.604 1.805 9.620 Atomic orbital electron populations 1.21676 0.94070 1.01625 1.02777 1.20498 0.97049 0.89918 1.03414 1.20919 0.93229 0.95658 0.89728 1.22078 0.97512 0.95593 0.99708 1.20365 0.97084 0.94353 0.95409 1.18027 0.81150 0.82730 0.84524 1.90721 1.58949 1.55666 1.37598 1.45976 1.45214 1.11244 1.30942 1.21253 0.93094 0.94856 0.89752 1.21447 0.95103 0.93066 0.88712 0.93983 1.22855 0.97262 0.85043 0.97094 1.87808 1.74346 1.28321 1.40543 1.23347 0.94759 1.00359 0.85846 1.21418 0.94829 0.86459 0.95426 1.44098 1.64374 1.10631 1.12654 1.19221 1.45950 0.87429 0.86217 0.90987 1.25123 0.99902 0.96346 0.97415 1.69971 1.50828 1.19748 1.13362 0.86451 0.78408 0.81830 0.81133 1.21295 1.21293 1.20368 1.22487 0.96762 1.02389 0.95544 1.18926 0.91060 0.86366 0.90366 1.84765 1.54771 1.61492 1.27629 1.66724 1.24798 1.03658 1.25781 0.92330 0.92837 0.91564 0.89844 0.89912 0.83299 0.74422 0.91076 0.91854 0.93427 0.89828 0.94094 0.90186 0.88959 0.95179 0.93305 0.82992 0.73954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.77 37.16 0.36 -1.01 16 2 C -0.07 -0.72 6.33 -27.88 -0.18 -0.90 16 3 C 0.14 1.96 6.17 -82.65 -0.51 1.45 16 4 C -0.13 -1.88 9.27 -39.03 -0.36 -2.25 16 5 C -0.06 -1.02 5.91 -104.68 -0.62 -1.64 16 6 C 0.55 10.09 7.80 -12.18 -0.10 10.00 16 7 O -0.55 -11.11 16.44 5.35 0.09 -11.02 16 8 N -0.68 -12.41 3.72 -61.15 -0.23 -12.64 16 9 C 0.13 2.37 4.45 -4.04 -0.02 2.35 16 10 C 0.12 2.31 3.21 -67.42 -0.22 2.09 16 11 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 12 C 0.06 0.96 6.29 37.31 0.23 1.19 16 13 O -0.39 -7.35 10.74 -35.23 -0.38 -7.73 16 14 C 0.03 0.64 6.98 37.31 0.26 0.91 16 15 C 0.14 3.14 5.37 -3.53 -0.02 3.12 16 16 N -0.59 -13.02 3.03 -164.31 -0.50 -13.52 16 17 C -0.26 -6.11 7.07 -15.06 -0.11 -6.22 16 18 H 0.07 1.74 5.80 -52.49 -0.30 1.44 16 19 C 0.01 0.30 5.05 -17.43 -0.09 0.21 16 20 N -0.90 -22.95 11.14 55.49 0.62 -22.33 16 21 Si 0.89 19.95 29.57 -169.99 -5.03 14.92 16 22 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.15 -2.45 9.55 -38.84 -0.37 -2.82 16 26 C 0.31 4.95 7.74 -17.17 -0.13 4.82 16 27 O -0.48 -6.94 13.56 -18.78 -0.25 -7.20 16 28 N -0.49 -7.53 9.87 -9.60 -0.09 -7.62 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.72 7.94 -51.93 -0.41 0.30 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.69 7.86 -51.93 -0.41 0.28 16 34 H 0.15 1.99 7.63 -52.48 -0.40 1.59 16 35 H 0.42 7.87 5.45 -40.82 -0.22 7.65 16 36 H 0.07 1.35 7.57 -51.93 -0.39 0.96 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.09 2.22 6.33 -51.93 -0.33 1.89 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.26 6.47 8.31 -40.82 -0.34 6.14 16 45 H 0.15 2.52 6.53 -52.49 -0.34 2.18 16 46 H 0.40 4.20 9.06 45.56 0.41 4.62 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -29.29 374.25 -7.75 -37.04 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -5.76 Total: 13.15 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -1.86 Total: 11.31 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.20 Total: -56.11 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.54 Total: -25.95 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.29 -7.75 -37.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051028902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.477 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds