Wall clock time and date at job start Tue Mar 31 2020 20:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47371 * 2 1 4 4 C 1.38020 * 119.51410 * 125.23823 * 3 2 1 5 5 C 1.39923 * 119.13501 * 180.29705 * 4 3 2 6 6 C 1.48159 * 120.89709 * 179.75341 * 5 4 3 7 7 O 1.21513 * 119.99753 * 359.71165 * 6 5 4 8 8 N 1.34781 * 120.00039 * 179.71793 * 6 5 4 9 9 C 1.46505 * 119.99723 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46730 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.71027 * 59.82108 * 10 9 8 12 12 C 1.53299 * 109.67732 * 180.35971 * 10 9 8 13 13 O 1.42970 * 109.21954 * 172.02672 * 12 10 9 14 14 C 1.42954 * 114.16399 * 297.41600 * 13 12 10 15 15 C 1.53294 * 109.22495 * 62.58266 * 14 13 12 16 16 N 1.47146 * 109.68133 * 299.28260 * 10 9 8 17 17 C 1.36935 * 120.98444 * 10.01603 * 16 10 9 18 18 H 1.07993 * 119.99907 * 328.79767 * 17 16 10 19 19 C 1.38823 * 119.99915 * 148.79331 * 17 16 10 20 20 N 1.31611 * 120.00093 * 348.99312 * 19 17 16 21 21 Si 1.86801 * 119.99837 * 168.99278 * 19 17 16 22 22 H 1.48498 * 109.46787 * 89.99894 * 21 19 17 23 23 H 1.48496 * 109.47285 * 210.00137 * 21 19 17 24 24 H 1.48503 * 109.47244 * 330.00390 * 21 19 17 25 25 C 1.39616 * 118.21029 * 359.47422 * 5 4 3 26 26 C 1.38843 * 118.95337 * 0.25392 * 25 5 4 27 27 O 1.35691 * 119.62482 * 179.97438 * 26 25 5 28 28 N 1.31880 * 119.51138 * 305.00098 * 3 2 1 29 29 H 1.08994 * 109.47542 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47169 * 300.00383 * 1 2 3 31 31 H 1.09004 * 109.47286 * 60.00100 * 1 2 3 32 32 H 1.09003 * 109.47169 * 239.99617 * 2 1 3 33 33 H 1.08997 * 109.46876 * 119.99920 * 2 1 3 34 34 H 1.08008 * 120.43298 * 0.04171 * 4 3 2 35 35 H 0.96999 * 119.99907 * 359.97438 * 8 6 5 36 36 H 1.08998 * 109.46961 * 59.99648 * 9 8 6 37 37 H 1.09003 * 109.46973 * 299.99623 * 9 8 6 38 38 H 1.08993 * 109.51336 * 52.10118 * 12 10 9 39 39 H 1.09004 * 109.51183 * 291.94584 * 12 10 9 40 40 H 1.09001 * 109.51549 * 302.65579 * 14 13 12 41 41 H 1.09001 * 109.55522 * 182.53528 * 14 13 12 42 42 H 1.09000 * 109.68406 * 187.97124 * 15 14 13 43 43 H 1.08997 * 109.71237 * 67.44255 * 15 14 13 44 44 H 0.97000 * 119.99837 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.52586 * 180.27427 * 25 5 4 46 46 H 0.96707 * 113.99607 * 90.00527 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9124 1.8308 0.9810 5 6 3.3689 3.1535 0.9771 6 6 4.3098 3.6366 2.0146 7 8 4.6912 2.8822 2.8876 8 7 4.7424 4.9128 1.9903 9 6 5.6723 5.3907 3.0167 10 6 6.0026 6.8624 2.7601 11 1 5.0886 7.4553 2.7928 12 6 6.9826 7.3650 3.8264 13 8 7.4283 8.6772 3.4749 14 6 8.1510 8.7393 2.2430 15 6 7.2309 8.3070 1.0956 16 7 6.6389 7.0048 1.4410 17 6 6.6740 5.9583 0.5585 18 1 6.7191 4.9437 0.9257 19 6 6.6515 6.2016 -0.8080 20 7 6.3798 7.4085 -1.2572 21 14 7.0068 4.8160 -2.0094 22 1 5.7383 4.1292 -2.3621 23 1 7.6265 5.3732 -3.2385 24 1 7.9382 3.8439 -1.3824 25 6 2.9186 4.0041 -0.0343 26 6 2.0377 3.5089 -0.9864 27 8 1.5910 4.3239 -1.9751 28 7 1.6283 2.2527 -0.9401 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 3.2411 1.1408 1.7442 35 1 4.4381 5.5149 1.2934 36 1 6.5884 4.8012 2.9797 37 1 5.2130 5.2870 3.9997 38 1 7.8383 6.6921 3.8805 39 1 6.4823 7.3976 4.7943 40 1 9.0111 8.0714 2.2914 41 1 8.4922 9.7602 2.0713 42 1 7.8090 8.2152 0.1761 43 1 6.4407 9.0453 0.9600 44 1 6.3644 7.5786 -2.2120 45 1 3.2506 5.0310 -0.0756 46 1 2.1442 4.3196 -2.7683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051028902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:20 Heat of formation + Delta-G solvation = -80.722972 kcal Electronic energy + Delta-G solvation = -30021.338420 eV Core-core repulsion = 25911.384275 eV Total energy + Delta-G solvation = -4109.954145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.95932 -40.69354 -39.84316 -38.32667 -37.00515 -35.45114 -35.00443 -33.54246 -33.04042 -32.10833 -30.45761 -29.03913 -27.52148 -25.88136 -25.25989 -24.60988 -23.51307 -23.05017 -21.49474 -21.14924 -19.90201 -18.72810 -18.18347 -17.97659 -17.58884 -17.12754 -16.75810 -16.63373 -16.28600 -16.24277 -16.13178 -15.70489 -15.44720 -15.36902 -15.04678 -14.97118 -14.70003 -14.34533 -14.13321 -13.59232 -13.36495 -13.14372 -13.00879 -12.93401 -12.82673 -12.75231 -12.52756 -12.36608 -12.18987 -12.02246 -11.94859 -11.87336 -11.46943 -11.28193 -11.04060 -10.72988 -10.59733 -10.52372 -9.97945 -9.94220 -8.64224 -7.89275 -5.40169 -0.47612 -0.17069 1.34696 1.42920 1.47849 1.70916 2.05984 2.39766 2.41531 2.66069 3.02679 3.26025 3.34675 3.40525 3.53550 3.83771 3.84291 3.98650 4.14656 4.20141 4.24990 4.30752 4.38822 4.43430 4.47185 4.57466 4.62380 4.65497 4.67484 4.73970 4.79183 4.92554 5.00143 5.06011 5.09940 5.18856 5.28691 5.30343 5.41525 5.46185 5.62424 5.66516 6.28837 6.35262 6.44138 6.50058 6.74253 7.06746 7.09312 7.74128 8.30832 9.14756 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.003968 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.636004 B = 7054.142252 C = 8173.365180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C 0.147 3.853 4 C -0.127 4.127 5 C -0.075 4.075 6 C 0.552 3.448 7 O -0.570 6.570 8 N -0.685 5.685 9 C 0.139 3.861 10 C 0.124 3.876 11 H 0.037 0.963 12 C 0.058 3.942 13 O -0.397 6.397 14 C 0.046 3.954 15 C 0.149 3.851 16 N -0.605 5.605 17 C -0.245 4.245 18 H 0.067 0.933 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 0.936 3.064 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.285 1.285 25 C -0.161 4.161 26 C 0.306 3.694 27 O -0.487 6.487 28 N -0.497 5.497 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.164 0.836 35 H 0.412 0.588 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.119 0.881 40 H 0.044 0.956 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.007 0.993 44 H 0.251 0.749 45 H 0.142 0.858 46 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.358 -8.562 3.814 11.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C 0.009 3.991 4 C -0.148 4.148 5 C -0.086 4.086 6 C 0.338 3.662 7 O -0.451 6.451 8 N -0.335 5.335 9 C 0.015 3.985 10 C 0.018 3.982 11 H 0.055 0.945 12 C -0.021 4.021 13 O -0.316 6.316 14 C -0.032 4.032 15 C 0.024 3.976 16 N -0.331 5.331 17 C -0.375 4.375 18 H 0.085 0.915 19 C -0.222 4.222 20 N -0.566 5.566 21 Si 0.765 3.235 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.211 1.211 25 C -0.183 4.183 26 C 0.128 3.872 27 O -0.296 6.296 28 N -0.218 5.218 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.181 0.819 35 H 0.251 0.749 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.137 0.863 40 H 0.062 0.938 41 H 0.121 0.879 42 H 0.084 0.916 43 H 0.025 0.975 44 H 0.061 0.939 45 H 0.160 0.840 46 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -7.115 -8.913 4.100 12.119 hybrid contribution 1.207 0.250 -1.517 1.955 sum -5.908 -8.663 2.583 10.799 Atomic orbital electron populations 1.21655 0.93520 1.02934 1.01713 1.20683 0.97409 0.87580 1.05170 1.21562 0.92063 0.97005 0.88476 1.22305 0.97338 0.94933 1.00222 1.20333 0.97500 0.95396 0.95325 1.18246 0.81022 0.82382 0.84545 1.90698 1.59891 1.56026 1.38530 1.46011 1.45217 1.11339 1.30937 1.21250 0.92705 0.93756 0.90751 1.21576 0.95227 0.93802 0.87586 0.94498 1.22988 0.97065 0.84273 0.97735 1.87811 1.74317 1.29368 1.40092 1.23210 0.93743 1.01734 0.84483 1.21239 0.94390 0.86015 0.95959 1.44296 1.64967 1.10207 1.13658 1.19246 1.44208 0.87639 0.86450 0.91508 1.25525 1.00715 0.97449 0.98492 1.70081 1.52635 1.20924 1.12989 0.85772 0.78144 0.80040 0.79536 1.20532 1.22021 1.21118 1.22397 0.97669 1.02036 0.96187 1.19016 0.90923 0.86760 0.90548 1.84719 1.55273 1.61423 1.28207 1.66857 1.24994 1.03530 1.26414 0.89860 0.93339 0.93182 0.88657 0.87522 0.81867 0.74937 0.92402 0.89433 0.93073 0.86341 0.93782 0.87850 0.91554 0.97521 0.93921 0.83993 0.72119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.77 71.98 0.70 -1.63 16 2 C -0.07 -1.23 6.33 29.85 0.19 -1.05 16 3 C 0.15 3.79 6.17 42.50 0.26 4.05 16 4 C -0.13 -3.56 9.27 22.63 0.21 -3.35 16 5 C -0.07 -2.46 5.91 -19.90 -0.12 -2.57 16 6 C 0.55 20.00 7.80 86.88 0.68 20.68 16 7 O -0.57 -22.55 16.44 -3.76 -0.06 -22.61 16 8 N -0.69 -24.81 3.72 -465.66 -1.73 -26.54 16 9 C 0.14 4.76 4.45 86.38 0.38 5.14 16 10 C 0.12 4.51 3.21 44.97 0.14 4.66 16 11 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 12 C 0.06 1.82 6.29 72.08 0.45 2.27 16 13 O -0.40 -14.08 10.74 -148.98 -1.60 -15.68 16 14 C 0.05 1.65 6.98 72.08 0.50 2.16 16 15 C 0.15 6.59 5.37 86.35 0.46 7.05 16 16 N -0.61 -26.66 3.03 -673.74 -2.04 -28.71 16 17 C -0.25 -11.67 7.07 84.04 0.59 -11.08 16 18 H 0.07 3.25 5.80 -2.91 -0.02 3.23 16 19 C -0.02 -1.21 5.05 84.87 0.43 -0.79 16 20 N -0.92 -48.34 11.14 21.65 0.24 -48.10 16 21 Si 0.94 41.40 29.57 68.60 2.03 43.42 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 24 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 25 C -0.16 -5.29 9.55 22.75 0.22 -5.07 16 26 C 0.31 9.61 7.74 84.78 0.66 10.26 16 27 O -0.49 -13.96 13.56 -90.10 -1.22 -15.18 16 28 N -0.50 -14.75 9.87 -297.16 -2.93 -17.68 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.99 7.94 -2.39 -0.02 0.97 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 1.38 7.86 -2.39 -0.02 1.36 16 34 H 0.16 4.03 7.63 -2.91 -0.02 4.01 16 35 H 0.41 15.80 5.45 -92.71 -0.51 15.30 16 36 H 0.06 2.15 7.57 -2.39 -0.02 2.13 16 37 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.12 2.93 8.14 -2.38 -0.02 2.91 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.07 3.27 6.33 -2.39 -0.02 3.25 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 45 H 0.14 4.87 6.53 -2.91 -0.02 4.85 16 46 H 0.42 8.57 9.06 -74.05 -0.67 7.90 16 Total: -1.00 -62.49 374.25 -1.71 -64.20 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.15 Total: 36.13 kcal Atomic # 6 Polarization: 24.97 SS G_CDS: 5.77 Total: 30.74 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -6.47 Total: -121.03 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -2.88 Total: -53.47 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -62.49 -1.71 -64.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051028902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.523 kcal (2) G-P(sol) polarization free energy of solvation -62.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds