Wall clock time and date at job start Tue Mar 31 2020 20:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47442 * 2 1 4 4 C 1.38351 * 120.26944 * 269.98231 * 3 2 1 5 5 N 1.31889 * 121.18097 * 180.02562 * 4 3 2 6 6 C 1.32235 * 121.80209 * 359.65165 * 5 4 3 7 7 O 1.35423 * 119.80039 * 180.34101 * 6 5 4 8 8 C 1.40287 * 120.39700 * 0.62810 * 6 5 4 9 9 C 1.47518 * 120.59262 * 179.68255 * 8 6 5 10 10 O 1.21589 * 120.00790 * 359.72723 * 9 8 6 11 11 N 1.34781 * 119.99702 * 179.72801 * 9 8 6 12 12 C 1.46506 * 120.00090 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.46961 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.67874 * 59.13734 * 13 12 11 15 15 C 1.53296 * 109.68106 * 179.65351 * 13 12 11 16 16 O 1.42964 * 109.22485 * 172.02693 * 15 13 12 17 17 C 1.42961 * 114.16538 * 297.42228 * 16 15 13 18 18 C 1.53293 * 109.22668 * 62.57755 * 17 16 15 19 19 N 1.47149 * 109.68562 * 298.61861 * 13 12 11 20 20 C 1.36935 * 120.98101 * 9.71416 * 19 13 12 21 21 H 1.08004 * 119.99976 * 328.55118 * 20 19 13 22 22 C 1.38810 * 120.00358 * 148.55011 * 20 19 13 23 23 N 1.31624 * 119.99498 * 349.18579 * 22 20 19 24 24 Si 1.86800 * 120.00441 * 169.18359 * 22 20 19 25 25 H 1.48507 * 109.46986 * 60.00039 * 24 22 20 26 26 H 1.48498 * 109.47430 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47010 * 300.00129 * 24 22 20 28 28 C 1.38336 * 120.26672 * 89.99769 * 3 2 1 29 29 H 1.09000 * 109.47275 * 300.00188 * 1 2 3 30 30 H 1.09006 * 109.46556 * 59.99842 * 1 2 3 31 31 H 1.09002 * 109.47197 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47178 * 240.00354 * 2 1 3 33 33 H 1.08996 * 109.47050 * 120.00356 * 2 1 3 34 34 H 1.07993 * 119.41379 * 0.02562 * 4 3 2 35 35 H 0.96701 * 113.99401 * 270.28783 * 7 6 5 36 36 H 0.97006 * 119.99920 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.46780 * 59.99390 * 12 11 9 38 38 H 1.08997 * 109.46305 * 299.99810 * 12 11 9 39 39 H 1.08996 * 109.51378 * 291.95462 * 15 13 12 40 40 H 1.09000 * 109.51224 * 52.05017 * 15 13 12 41 41 H 1.08994 * 109.50991 * 182.50606 * 17 16 15 42 42 H 1.09008 * 109.51192 * 302.65306 * 17 16 15 43 43 H 1.09001 * 109.67686 * 67.41684 * 18 17 16 44 44 H 1.08991 * 109.68593 * 187.97312 * 18 17 16 45 45 H 0.97008 * 119.99426 * 179.97438 * 23 22 20 46 46 H 1.08003 * 120.82960 * 359.95789 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2653 2.0782 -1.1949 5 7 2.7054 3.3213 -1.2159 6 6 2.9374 3.9973 -0.1033 7 8 3.3825 5.2744 -0.1721 8 6 2.7310 3.3974 1.1479 9 6 2.9950 4.1452 2.3918 10 8 3.4000 5.2904 2.3385 11 7 2.7873 3.5589 3.5875 12 6 3.0490 4.3016 4.8229 13 6 2.7341 3.4136 6.0283 14 1 3.3511 2.5157 5.9939 15 6 3.0145 4.1834 7.3239 16 8 2.5447 3.4188 8.4368 17 6 1.1336 3.1896 8.4354 18 6 0.7567 2.3689 7.1967 19 7 1.3114 3.0383 6.0092 20 6 0.5264 3.3055 4.9194 21 1 0.7252 4.1755 4.3110 22 6 -0.5247 2.4583 4.5966 23 7 -0.6402 1.2939 5.1993 24 14 -1.7752 2.9706 3.3070 25 1 -1.0857 3.1967 2.0112 26 1 -2.7899 1.8982 3.1478 27 1 -2.4443 4.2247 3.7371 28 6 2.2648 2.0782 1.1948 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0834 1.5643 -2.1271 35 1 4.3459 5.3545 -0.1940 36 1 2.4639 2.6453 3.6301 37 1 2.4192 5.1908 4.8525 38 1 4.0975 4.5979 4.8534 39 1 4.0871 4.3500 7.4235 40 1 2.4981 5.1429 7.2964 41 1 0.8529 2.6413 9.3346 42 1 0.6095 4.1451 8.4123 43 1 1.1743 1.3655 7.2802 44 1 -0.3282 2.3097 7.1116 45 1 -1.3750 0.7019 4.9740 46 1 2.0901 1.5863 2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051185029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:03 Heat of formation + Delta-G solvation = -59.010049 kcal Electronic energy + Delta-G solvation = -30544.131204 eV Core-core repulsion = 26435.118602 eV Total energy + Delta-G solvation = -4109.012602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73312 -39.05528 -38.20497 -37.20282 -35.33102 -34.20517 -33.66930 -32.52805 -31.27972 -30.41441 -29.05103 -27.28689 -25.87693 -24.26317 -23.95826 -23.51456 -22.16607 -21.38456 -20.02157 -19.65678 -18.72594 -17.38846 -17.09844 -16.43026 -15.96705 -15.83961 -15.63766 -14.87308 -14.82853 -14.65101 -14.37486 -14.05837 -13.89051 -13.84274 -13.69697 -13.30120 -13.24898 -12.94804 -12.87658 -12.59747 -12.05849 -11.90767 -11.72913 -11.61763 -11.37260 -11.12999 -11.03887 -10.89321 -10.81980 -10.47828 -10.33233 -10.11623 -9.85310 -9.76565 -9.71420 -9.27493 -9.00329 -8.78068 -8.70132 -8.33199 -6.80153 -5.98603 -3.48655 0.70132 1.15466 3.12549 3.23651 3.29103 3.35002 3.54582 3.67543 3.97763 4.27603 4.47955 4.60402 4.68985 4.82164 4.92588 5.06991 5.18408 5.23446 5.31117 5.33792 5.49254 5.55008 5.66681 5.67792 5.79202 5.80093 5.92859 5.94691 5.97752 6.03218 6.11046 6.17406 6.24993 6.27477 6.28965 6.45975 6.47596 6.68877 6.98956 7.00922 7.42201 7.61405 7.63517 7.81345 7.87077 8.09182 8.21673 8.69615 8.98314 9.58204 10.17685 11.07317 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.004903 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.578890 B = 5709.720053 C = 7129.795161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.076 4.076 3 C -0.153 4.153 4 C 0.141 3.859 5 N -0.509 5.509 6 C 0.356 3.644 7 O -0.459 6.459 8 C -0.189 4.189 9 C 0.555 3.445 10 O -0.541 6.541 11 N -0.689 5.689 12 C 0.137 3.863 13 C 0.125 3.875 14 H 0.042 0.958 15 C 0.056 3.944 16 O -0.392 6.392 17 C 0.034 3.966 18 C 0.144 3.856 19 N -0.591 5.591 20 C -0.257 4.257 21 H 0.072 0.928 22 C 0.014 3.986 23 N -0.898 5.898 24 Si 0.888 3.112 25 H -0.279 1.279 26 H -0.288 1.288 27 H -0.282 1.282 28 C -0.020 4.020 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.161 0.839 35 H 0.400 0.600 36 H 0.413 0.587 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.030 0.970 44 H 0.092 0.908 45 H 0.256 0.744 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 -2.967 -6.003 9.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.155 4.155 4 C -0.017 4.017 5 N -0.228 5.228 6 C 0.176 3.824 7 O -0.266 6.266 8 C -0.196 4.196 9 C 0.341 3.659 10 O -0.420 6.420 11 N -0.341 5.341 12 C 0.012 3.988 13 C 0.018 3.982 14 H 0.059 0.941 15 C -0.023 4.023 16 O -0.311 6.311 17 C -0.043 4.043 18 C 0.019 3.981 19 N -0.316 5.316 20 C -0.386 4.386 21 H 0.089 0.911 22 C -0.186 4.186 23 N -0.541 5.541 24 Si 0.717 3.283 25 H -0.205 1.205 26 H -0.213 1.213 27 H -0.208 1.208 28 C -0.046 4.046 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.178 0.822 35 H 0.259 0.741 36 H 0.251 0.749 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.365 -1.739 -6.651 9.369 hybrid contribution -1.003 -0.581 -0.056 1.160 sum 5.362 -2.320 -6.706 8.895 Atomic orbital electron populations 1.21801 0.94386 1.02080 1.02645 1.20446 0.96435 0.91131 1.03351 1.20868 1.02237 0.98746 0.93637 1.22543 0.92603 0.88833 0.97681 1.67279 1.15303 1.08699 1.31472 1.19154 0.92547 0.84301 0.86398 1.84740 1.27506 1.18953 1.95368 1.21225 1.07794 0.95531 0.95048 1.17750 0.78832 0.86207 0.83157 1.90753 1.46912 1.17054 1.87308 1.45904 1.65205 1.18510 1.04455 1.21195 0.99357 0.95379 0.82830 1.21435 0.88691 0.95736 0.92361 0.94087 1.22857 0.98502 0.93811 0.87131 1.87805 1.23892 1.74480 1.44885 1.23354 0.80971 0.99635 1.00388 1.21412 1.00597 0.92873 0.83231 1.44069 1.02736 1.70249 1.14574 1.19181 1.09596 1.05289 1.04569 0.91062 1.25091 1.00287 0.94876 0.98344 1.69974 1.31945 1.08170 1.44001 0.86584 0.81714 0.77936 0.82016 1.20490 1.21330 1.20844 1.21827 0.91045 0.92356 0.99395 0.91971 0.92708 0.92013 0.90652 0.90273 0.82226 0.74125 0.74877 0.91256 0.92085 0.89875 0.93451 0.90220 0.94103 0.95206 0.89029 0.93353 0.83344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.90 37.16 0.37 -1.41 16 2 C -0.08 -0.80 6.08 -27.88 -0.17 -0.97 16 3 C -0.15 -2.00 5.14 -104.54 -0.54 -2.54 16 4 C 0.14 1.82 10.84 -17.49 -0.19 1.63 16 5 N -0.51 -7.92 10.37 -12.98 -0.13 -8.06 16 6 C 0.36 5.99 7.77 -16.61 -0.13 5.87 16 7 O -0.46 -7.53 11.66 -39.73 -0.46 -8.00 16 8 C -0.19 -3.26 5.90 -104.69 -0.62 -3.87 16 9 C 0.56 10.51 7.77 -12.48 -0.10 10.42 16 10 O -0.54 -11.33 15.19 -16.48 -0.25 -11.58 16 11 N -0.69 -12.67 3.77 -61.36 -0.23 -12.90 16 12 C 0.14 2.45 4.44 -4.04 -0.02 2.43 16 13 C 0.12 2.34 3.20 -67.43 -0.22 2.12 16 14 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 15 C 0.06 0.96 6.29 37.31 0.23 1.19 16 16 O -0.39 -7.40 10.74 -35.23 -0.38 -7.77 16 17 C 0.03 0.64 6.98 37.31 0.26 0.90 16 18 C 0.14 3.15 5.38 -3.53 -0.02 3.13 16 19 N -0.59 -13.04 3.03 -164.30 -0.50 -13.54 16 20 C -0.26 -6.16 7.09 -15.06 -0.11 -6.27 16 21 H 0.07 1.78 5.83 -52.48 -0.31 1.47 16 22 C 0.01 0.34 5.05 -17.43 -0.09 0.26 16 23 N -0.90 -22.98 11.17 55.49 0.62 -22.36 16 24 Si 0.89 20.47 29.57 -169.99 -5.03 15.45 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C -0.02 -0.31 9.31 -38.89 -0.36 -0.67 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.40 4.67 9.06 45.56 0.41 5.08 16 36 H 0.41 7.75 5.49 -40.82 -0.22 7.53 16 37 H 0.07 1.37 7.52 -51.93 -0.39 0.98 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 2.21 6.36 -51.93 -0.33 1.88 16 45 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 46 H 0.15 2.29 6.52 -52.48 -0.34 1.94 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -30.19 372.70 -8.24 -38.43 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -5.81 Total: 12.50 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: -1.69 Total: 12.23 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.24 Total: -56.86 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -1.09 Total: -27.36 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.19 -8.24 -38.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051185029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.580 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds