Wall clock time and date at job start Tue Mar 31 2020 20:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47442 * 2 1 4 4 C 1.38351 * 120.26944 * 269.98231 * 3 2 1 5 5 N 1.31889 * 121.18097 * 180.02562 * 4 3 2 6 6 C 1.32235 * 121.80209 * 359.65165 * 5 4 3 7 7 O 1.35423 * 119.80039 * 180.34101 * 6 5 4 8 8 C 1.40287 * 120.39700 * 0.62810 * 6 5 4 9 9 C 1.47518 * 120.59262 * 179.68255 * 8 6 5 10 10 O 1.21589 * 120.00790 * 359.72723 * 9 8 6 11 11 N 1.34781 * 119.99702 * 179.72801 * 9 8 6 12 12 C 1.46506 * 120.00090 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.46961 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.67874 * 59.13734 * 13 12 11 15 15 C 1.53296 * 109.68106 * 179.65351 * 13 12 11 16 16 O 1.42964 * 109.22485 * 172.02693 * 15 13 12 17 17 C 1.42961 * 114.16538 * 297.42228 * 16 15 13 18 18 C 1.53293 * 109.22668 * 62.57755 * 17 16 15 19 19 N 1.47149 * 109.68562 * 298.61861 * 13 12 11 20 20 C 1.36935 * 120.98101 * 9.71416 * 19 13 12 21 21 H 1.08004 * 119.99976 * 328.55118 * 20 19 13 22 22 C 1.38810 * 120.00358 * 148.55011 * 20 19 13 23 23 N 1.31624 * 119.99498 * 349.18579 * 22 20 19 24 24 Si 1.86800 * 120.00441 * 169.18359 * 22 20 19 25 25 H 1.48507 * 109.46986 * 60.00039 * 24 22 20 26 26 H 1.48498 * 109.47430 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47010 * 300.00129 * 24 22 20 28 28 C 1.38336 * 120.26672 * 89.99769 * 3 2 1 29 29 H 1.09000 * 109.47275 * 300.00188 * 1 2 3 30 30 H 1.09006 * 109.46556 * 59.99842 * 1 2 3 31 31 H 1.09002 * 109.47197 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47178 * 240.00354 * 2 1 3 33 33 H 1.08996 * 109.47050 * 120.00356 * 2 1 3 34 34 H 1.07993 * 119.41379 * 0.02562 * 4 3 2 35 35 H 0.96701 * 113.99401 * 270.28783 * 7 6 5 36 36 H 0.97006 * 119.99920 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.46780 * 59.99390 * 12 11 9 38 38 H 1.08997 * 109.46305 * 299.99810 * 12 11 9 39 39 H 1.08996 * 109.51378 * 291.95462 * 15 13 12 40 40 H 1.09000 * 109.51224 * 52.05017 * 15 13 12 41 41 H 1.08994 * 109.50991 * 182.50606 * 17 16 15 42 42 H 1.09008 * 109.51192 * 302.65306 * 17 16 15 43 43 H 1.09001 * 109.67686 * 67.41684 * 18 17 16 44 44 H 1.08991 * 109.68593 * 187.97312 * 18 17 16 45 45 H 0.97008 * 119.99426 * 179.97438 * 23 22 20 46 46 H 1.08003 * 120.82960 * 359.95789 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2653 2.0782 -1.1949 5 7 2.7054 3.3213 -1.2159 6 6 2.9374 3.9973 -0.1033 7 8 3.3825 5.2744 -0.1721 8 6 2.7310 3.3974 1.1479 9 6 2.9950 4.1452 2.3918 10 8 3.4000 5.2904 2.3385 11 7 2.7873 3.5589 3.5875 12 6 3.0490 4.3016 4.8229 13 6 2.7341 3.4136 6.0283 14 1 3.3511 2.5157 5.9939 15 6 3.0145 4.1834 7.3239 16 8 2.5447 3.4188 8.4368 17 6 1.1336 3.1896 8.4354 18 6 0.7567 2.3689 7.1967 19 7 1.3114 3.0383 6.0092 20 6 0.5264 3.3055 4.9194 21 1 0.7252 4.1755 4.3110 22 6 -0.5247 2.4583 4.5966 23 7 -0.6402 1.2939 5.1993 24 14 -1.7752 2.9706 3.3070 25 1 -1.0857 3.1967 2.0112 26 1 -2.7899 1.8982 3.1478 27 1 -2.4443 4.2247 3.7371 28 6 2.2648 2.0782 1.1948 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0834 1.5643 -2.1271 35 1 4.3459 5.3545 -0.1940 36 1 2.4639 2.6453 3.6301 37 1 2.4192 5.1908 4.8525 38 1 4.0975 4.5979 4.8534 39 1 4.0871 4.3500 7.4235 40 1 2.4981 5.1429 7.2964 41 1 0.8529 2.6413 9.3346 42 1 0.6095 4.1451 8.4123 43 1 1.1743 1.3655 7.2802 44 1 -0.3282 2.3097 7.1116 45 1 -1.3750 0.7019 4.9740 46 1 2.0901 1.5863 2.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051185029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:02 Heat of formation + Delta-G solvation = -81.044319 kcal Electronic energy + Delta-G solvation = -30545.086682 eV Core-core repulsion = 26435.118602 eV Total energy + Delta-G solvation = -4109.968079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.96233 -40.53227 -39.68863 -38.39712 -36.91414 -35.35404 -35.21736 -33.89857 -32.88558 -31.98687 -30.12194 -29.01103 -27.32188 -25.52502 -25.23116 -25.03131 -23.57227 -22.66178 -21.51833 -21.17709 -19.95031 -18.92585 -18.30250 -17.99696 -17.56982 -17.14866 -17.05513 -16.33232 -16.27951 -16.12012 -15.85828 -15.51866 -15.32634 -15.18547 -14.88324 -14.82540 -14.47187 -14.37623 -14.07733 -14.00487 -13.55993 -13.14051 -13.08917 -12.92360 -12.82804 -12.78381 -12.53433 -12.39694 -12.19766 -12.01012 -11.89830 -11.86980 -11.32504 -11.20116 -10.99163 -10.72682 -10.59494 -10.42921 -10.00027 -9.75452 -8.62649 -7.89966 -5.40090 -0.49156 -0.01017 1.34450 1.39839 1.44546 1.80115 2.17325 2.40495 2.49172 2.72788 3.03176 3.25418 3.41922 3.49685 3.64924 3.69770 3.82149 4.01919 4.10416 4.22004 4.26760 4.32643 4.44465 4.46607 4.47882 4.59721 4.63408 4.66157 4.68859 4.74752 4.79948 4.87565 5.00434 5.07560 5.11090 5.29458 5.30221 5.32033 5.43841 5.49735 5.63095 5.66934 6.29004 6.35963 6.49352 6.60343 6.76243 7.09452 7.21035 7.74305 8.30750 9.13698 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.004903 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.578890 B = 5709.720053 C = 7129.795161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.072 4.072 3 C -0.147 4.147 4 C 0.151 3.849 5 N -0.520 5.520 6 C 0.346 3.654 7 O -0.475 6.475 8 C -0.213 4.213 9 C 0.554 3.446 10 O -0.567 6.567 11 N -0.689 5.689 12 C 0.142 3.858 13 C 0.127 3.873 14 H 0.041 0.959 15 C 0.058 3.942 16 O -0.396 6.396 17 C 0.045 3.955 18 C 0.149 3.851 19 N -0.603 5.603 20 C -0.243 4.243 21 H 0.061 0.939 22 C -0.017 4.017 23 N -0.916 5.916 24 Si 0.928 3.072 25 H -0.284 1.284 26 H -0.287 1.287 27 H -0.293 1.293 28 C -0.028 4.028 29 H 0.024 0.976 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.204 0.796 35 H 0.416 0.584 36 H 0.410 0.590 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.048 0.952 41 H 0.105 0.895 42 H 0.041 0.959 43 H 0.011 0.989 44 H 0.065 0.935 45 H 0.252 0.748 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.337 -3.766 -6.892 10.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 C -0.149 4.149 4 C -0.006 4.006 5 N -0.239 5.239 6 C 0.166 3.834 7 O -0.284 6.284 8 C -0.220 4.220 9 C 0.341 3.659 10 O -0.448 6.448 11 N -0.340 5.340 12 C 0.018 3.982 13 C 0.020 3.980 14 H 0.059 0.941 15 C -0.021 4.021 16 O -0.315 6.315 17 C -0.033 4.033 18 C 0.024 3.976 19 N -0.329 5.329 20 C -0.373 4.373 21 H 0.078 0.922 22 C -0.215 4.215 23 N -0.561 5.561 24 Si 0.758 3.242 25 H -0.210 1.210 26 H -0.212 1.212 27 H -0.220 1.220 28 C -0.055 4.055 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.221 0.779 35 H 0.277 0.723 36 H 0.248 0.752 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.137 0.863 40 H 0.066 0.934 41 H 0.123 0.877 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.218 -2.532 -7.524 10.729 hybrid contribution -1.229 -0.352 0.173 1.290 sum 5.989 -2.884 -7.351 9.911 Atomic orbital electron populations 1.21812 0.95160 1.02836 1.01183 1.20530 0.95513 0.89601 1.05284 1.21183 1.01007 0.99900 0.92804 1.23283 0.90232 0.87895 0.99215 1.67382 1.15965 1.09826 1.30731 1.19259 0.92969 0.84480 0.86672 1.84678 1.29138 1.19231 1.95399 1.21135 1.10035 0.96379 0.94402 1.18044 0.78139 0.85994 0.83757 1.90721 1.48277 1.18111 1.87734 1.45907 1.65084 1.18304 1.04682 1.21174 1.00298 0.94308 0.82448 1.21559 0.86561 0.96017 0.93830 0.94118 1.22981 1.00623 0.93049 0.85446 1.87810 1.23620 1.74694 1.45366 1.23223 0.81152 0.99276 0.99602 1.21246 0.98875 0.92702 0.84776 1.44236 1.04256 1.70150 1.14269 1.19124 1.09449 1.04328 1.04446 0.92162 1.25391 1.01429 0.95117 0.99539 1.70054 1.32273 1.08746 1.45058 0.85974 0.80515 0.76983 0.80697 1.21026 1.21241 1.22003 1.21882 0.91397 0.91906 1.00265 0.95655 0.91886 0.90227 0.86862 0.90257 0.77934 0.72309 0.75201 0.93227 0.89681 0.86325 0.93405 0.87729 0.94028 0.97125 0.91642 0.93838 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.90 71.98 0.71 -2.55 16 2 C -0.07 -1.31 6.08 29.85 0.18 -1.13 16 3 C -0.15 -3.57 5.14 -19.81 -0.10 -3.67 16 4 C 0.15 3.47 10.84 84.71 0.92 4.39 16 5 N -0.52 -15.36 10.37 -308.00 -3.19 -18.55 16 6 C 0.35 11.55 7.77 85.13 0.66 12.21 16 7 O -0.48 -15.68 11.66 -66.36 -0.77 -16.45 16 8 C -0.21 -7.38 5.90 -19.91 -0.12 -7.49 16 9 C 0.55 21.34 7.77 86.69 0.67 22.01 16 10 O -0.57 -24.13 15.19 16.82 0.26 -23.87 16 11 N -0.69 -25.67 3.77 -466.29 -1.76 -27.43 16 12 C 0.14 5.03 4.44 86.38 0.38 5.41 16 13 C 0.13 4.64 3.20 44.96 0.14 4.78 16 14 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 15 C 0.06 1.84 6.29 72.08 0.45 2.30 16 16 O -0.40 -14.10 10.74 -148.98 -1.60 -15.70 16 17 C 0.05 1.63 6.98 72.08 0.50 2.13 16 18 C 0.15 6.56 5.38 86.35 0.46 7.03 16 19 N -0.60 -26.73 3.03 -673.72 -2.04 -28.78 16 20 C -0.24 -11.83 7.09 84.03 0.60 -11.24 16 21 H 0.06 3.08 5.83 -2.91 -0.02 3.06 16 22 C -0.02 -0.86 5.05 84.86 0.43 -0.43 16 23 N -0.92 -47.82 11.17 21.65 0.24 -47.58 16 24 Si 0.93 42.93 29.57 68.60 2.03 44.96 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 26 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 C -0.03 -0.87 9.31 22.72 0.21 -0.66 16 29 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.11 1.28 8.09 -2.39 -0.02 1.26 16 33 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 34 H 0.20 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.42 9.81 9.06 -74.06 -0.67 9.14 16 36 H 0.41 15.74 5.49 -92.70 -0.51 15.23 16 37 H 0.05 1.97 7.52 -2.39 -0.02 1.95 16 38 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.07 3.22 6.36 -2.39 -0.02 3.20 16 45 H 0.25 13.00 8.31 -92.70 -0.77 12.23 16 46 H 0.14 4.44 6.52 -2.91 -0.02 4.43 16 Total: -1.00 -65.80 372.70 -0.89 -66.68 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.15 Total: 33.63 kcal Atomic # 6 Polarization: 26.98 SS G_CDS: 6.11 Total: 33.09 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -6.75 Total: -122.34 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -2.12 Total: -56.02 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -65.80 -0.89 -66.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051185029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.360 kcal (2) G-P(sol) polarization free energy of solvation -65.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds