Wall clock time and date at job start Tue Mar 31 2020 18:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33698 * 126.27098 * 2 1 4 4 C 1.30608 * 108.99611 * 179.97438 * 3 2 1 5 5 O 1.33662 * 109.15488 * 359.73022 * 4 3 2 6 6 C 1.35339 * 107.68473 * 0.43030 * 5 4 3 7 7 C 1.46728 * 126.64329 * 179.83802 * 6 5 4 8 8 O 1.21681 * 119.99598 * 186.68722 * 7 6 5 9 9 N 1.34774 * 119.99920 * 6.69764 * 7 6 5 10 10 C 1.47160 * 121.05883 * 176.33500 * 9 7 6 11 11 C 1.53272 * 108.55690 * 231.11889 * 10 9 7 12 12 H 1.09001 * 109.50942 * 67.09496 * 11 10 9 13 13 C 1.52998 * 109.51608 * 187.19503 * 11 10 9 14 14 O 1.43107 * 109.22811 * 307.12194 * 11 10 9 15 15 C 1.42067 * 114.31820 * 61.15506 * 14 11 10 16 16 C 1.54512 * 110.33476 * 61.92829 * 15 14 11 17 17 C 1.55018 * 101.52649 * 83.94144 * 16 15 14 18 18 N 1.47482 * 104.90241 * 36.37267 * 17 16 15 19 19 C 1.36935 * 125.66393 * 155.99625 * 18 17 16 20 20 H 1.07997 * 119.99866 * 180.02562 * 19 18 17 21 21 C 1.38817 * 119.99543 * 0.02934 * 19 18 17 22 22 N 1.31615 * 120.00564 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99510 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47149 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46553 * 120.00216 * 23 21 19 26 26 H 1.48498 * 109.47281 * 240.00181 * 23 21 19 27 27 C 1.47180 * 108.67204 * 335.98224 * 18 17 16 28 28 C 1.47303 * 121.06080 * 356.34829 * 9 7 6 29 29 H 1.08995 * 109.47371 * 270.04275 * 1 2 3 30 30 H 1.08996 * 109.47187 * 30.05092 * 1 2 3 31 31 H 1.09008 * 109.46645 * 150.04238 * 1 2 3 32 32 H 1.08005 * 125.42272 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.62307 * 111.39778 * 10 9 7 34 34 H 1.08997 * 109.77989 * 350.93404 * 10 9 7 35 35 H 1.08998 * 109.46943 * 59.99803 * 13 11 10 36 36 H 1.09002 * 109.47000 * 299.99878 * 13 11 10 37 37 H 1.08993 * 109.47361 * 179.97438 * 13 11 10 38 38 H 1.09005 * 111.01136 * 202.00116 * 16 15 14 39 39 H 1.09006 * 111.01385 * 325.87469 * 16 15 14 40 40 H 1.09007 * 110.35410 * 155.23419 * 17 16 15 41 41 H 1.09004 * 110.35134 * 277.51937 * 17 16 15 42 42 H 0.96995 * 120.00081 * 179.97438 * 22 21 19 43 43 H 1.08993 * 109.91168 * 242.13863 * 27 18 17 44 44 H 1.08999 * 109.91022 * 120.87243 * 27 18 17 45 45 H 1.08996 * 109.68273 * 250.32482 * 28 9 7 46 46 H 1.08998 * 109.68315 * 10.87698 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6901 0.0006 5 8 3.5890 -0.6458 0.0069 6 6 2.3137 -1.0991 0.0007 7 6 1.8828 -2.5017 0.0009 8 8 0.7044 -2.7760 -0.1278 9 7 2.7923 -3.4860 0.1439 10 6 2.3785 -4.8957 0.2275 11 6 3.0349 -5.5243 1.4617 12 1 2.6201 -5.0742 2.3637 13 6 2.7663 -7.0305 1.4722 14 8 4.4461 -5.2908 1.4154 15 6 4.8126 -3.9183 1.4264 16 6 4.3386 -3.2464 2.7345 17 6 5.4933 -3.6067 3.7039 18 7 6.7138 -3.5491 2.8780 19 6 7.9836 -3.3352 3.3438 20 1 8.8146 -3.3103 2.6545 21 6 8.2026 -3.1505 4.7021 22 7 7.1900 -3.1814 5.5423 23 14 9.9350 -2.8594 5.3376 24 1 10.8883 -2.8708 4.1992 25 1 9.9966 -1.5424 6.0211 26 1 10.2970 -3.9328 6.2978 27 6 6.3404 -3.7600 1.4701 28 6 4.2321 -3.1849 0.2216 29 1 -0.3634 0.0008 1.0276 30 1 -0.3633 0.8895 -0.5146 31 1 -0.3633 -0.8905 -0.5132 32 1 4.4042 1.3446 0.0003 33 1 2.7011 -5.4257 -0.6686 34 1 1.2941 -4.9570 0.3185 35 1 3.1828 -7.4801 0.5709 36 1 1.6912 -7.2076 1.5031 37 1 3.2337 -7.4768 2.3498 38 1 4.2544 -2.1666 2.6110 39 1 3.3952 -3.6741 3.0740 40 1 5.5490 -2.8796 4.5142 41 1 5.3532 -4.6111 4.1037 42 1 7.3432 -3.0527 6.4914 43 1 6.8182 -4.6632 1.0907 44 1 6.6415 -2.8990 0.8733 45 1 4.7277 -3.5238 -0.6881 46 1 4.3768 -2.1112 0.3408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071155188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:49 Heat of formation + Delta-G solvation = -1.689856 kcal Electronic energy + Delta-G solvation = -30984.804525 eV Core-core repulsion = 26878.277513 eV Total energy + Delta-G solvation = -4106.527012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.64985 -40.61046 -38.88028 -36.35738 -35.77748 -34.62372 -33.19017 -31.84462 -31.37870 -29.37247 -28.63206 -28.36494 -26.50918 -25.68972 -24.00135 -23.42119 -22.30641 -21.56031 -20.37697 -20.06805 -19.26074 -17.71091 -17.18822 -17.10292 -16.94103 -16.60407 -15.99206 -15.27063 -15.08261 -14.81236 -14.57556 -14.29345 -14.11197 -13.56703 -13.44548 -13.39443 -13.31311 -12.93417 -12.58938 -12.45789 -12.34885 -12.26793 -11.97605 -11.75076 -11.59531 -11.27634 -11.10024 -10.99665 -10.92864 -10.92409 -10.53846 -10.39213 -10.14795 -10.10170 -9.99514 -9.67505 -9.61006 -9.13248 -8.69313 -8.47655 -6.88637 -5.68892 -3.10987 0.65816 2.21077 2.26423 2.77666 2.92528 3.37489 3.42845 3.45596 3.78639 3.87327 4.29901 4.44114 4.54916 4.65914 4.87080 4.99516 5.01604 5.09224 5.15605 5.26826 5.38728 5.43551 5.45059 5.49830 5.52326 5.58875 5.64928 5.68201 5.69722 5.80968 5.94908 5.98416 6.06082 6.12361 6.16452 6.27934 6.40674 6.43846 6.53935 6.60404 7.02669 7.38649 7.48843 7.55027 7.60093 7.79025 7.80577 8.30065 9.17300 9.77774 10.42299 11.35241 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.004199 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.031597 B = 6666.504731 C = 8292.852053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.081 3.919 3 N -0.495 5.495 4 C 0.203 3.797 5 O -0.181 6.181 6 C -0.115 4.115 7 C 0.612 3.388 8 O -0.522 6.522 9 N -0.599 5.599 10 C 0.086 3.914 11 C 0.069 3.931 12 H 0.068 0.932 13 C -0.140 4.140 14 O -0.351 6.351 15 C 0.097 3.903 16 C -0.166 4.166 17 C 0.161 3.839 18 N -0.601 5.601 19 C -0.222 4.222 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.915 3.085 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.155 3.845 28 C 0.078 3.922 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.256 0.744 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.106 0.894 41 H 0.015 0.985 42 H 0.252 0.748 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.078 0.922 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.487 1.723 -12.369 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 N -0.224 5.224 4 C -0.022 4.022 5 O -0.068 6.068 6 C -0.170 4.170 7 C 0.400 3.600 8 O -0.401 6.401 9 N -0.330 5.330 10 C -0.036 4.036 11 C 0.010 3.990 12 H 0.086 0.914 13 C -0.198 4.198 14 O -0.270 6.270 15 C 0.056 3.944 16 C -0.205 4.205 17 C 0.036 3.964 18 N -0.327 5.327 19 C -0.350 4.350 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.745 3.255 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.028 3.972 28 C -0.045 4.045 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.272 0.728 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.124 0.876 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.096 0.904 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.980 2.031 -12.253 17.256 hybrid contribution 1.240 -0.223 0.409 1.325 sum -10.740 1.808 -11.843 16.090 Atomic orbital electron populations 1.20411 0.85421 1.04399 1.03745 1.22042 0.98309 0.86359 0.97526 1.70375 1.01329 1.31289 1.19454 1.28520 0.97591 0.80188 0.95878 1.84668 1.29111 1.23846 1.69152 1.22803 0.81594 0.95962 1.16599 1.16415 0.85187 0.81388 0.76992 1.90816 1.15974 1.81712 1.51575 1.48044 1.07356 1.06651 1.70973 1.22454 1.01802 0.79749 0.99606 1.22492 0.83162 0.96830 0.96516 0.91430 1.21686 1.01620 0.92862 1.03617 1.87923 1.21020 1.23821 1.94271 1.22261 0.97004 0.81684 0.93458 1.23509 1.00420 0.99547 0.96979 1.21883 0.81313 1.00218 0.92972 1.44501 1.04013 1.84347 0.99868 1.19112 0.83112 1.41292 0.91510 0.90273 1.24786 0.97742 1.02242 0.95779 1.69806 1.28254 1.56736 1.02193 0.85994 0.83359 0.77444 0.78663 1.20471 1.21752 1.21732 1.21044 0.88273 0.98476 0.89396 1.22890 0.78889 1.03031 0.99652 0.90023 0.90452 0.88563 0.72823 0.90334 0.88053 0.91691 0.91046 0.91060 0.91775 0.92040 0.87627 0.96663 0.93749 0.94438 0.94348 0.90366 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 9.95 36.00 0.36 -0.55 16 2 C 0.08 1.08 7.16 -82.47 -0.59 0.49 16 3 N -0.50 -6.32 11.26 -10.89 -0.12 -6.44 16 4 C 0.20 2.13 13.21 52.24 0.69 2.82 16 5 O -0.18 -2.29 7.31 4.44 0.03 -2.26 16 6 C -0.11 -1.60 6.88 -36.84 -0.25 -1.85 16 7 C 0.61 8.98 7.68 -12.83 -0.10 8.89 16 8 O -0.52 -8.18 14.26 5.21 0.07 -8.11 16 9 N -0.60 -8.42 2.91 -174.16 -0.51 -8.93 16 10 C 0.09 1.08 5.89 -3.54 -0.02 1.06 16 11 C 0.07 0.95 3.17 -26.59 -0.08 0.86 16 12 H 0.07 1.01 6.13 -51.93 -0.32 0.69 16 13 C -0.14 -1.55 9.57 37.16 0.36 -1.19 16 14 O -0.35 -6.14 9.87 -35.23 -0.35 -6.48 16 15 C 0.10 1.70 0.83 -89.73 -0.07 1.62 16 16 C -0.17 -3.20 5.91 -24.87 -0.15 -3.35 16 17 C 0.16 3.92 5.88 -2.44 -0.01 3.91 16 18 N -0.60 -15.14 3.40 -170.24 -0.58 -15.72 16 19 C -0.22 -6.06 10.28 -15.06 -0.15 -6.22 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.60 10.09 55.49 0.56 -26.04 16 23 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.15 3.16 6.61 -3.33 -0.02 3.13 16 28 C 0.08 1.13 5.02 -3.85 -0.02 1.11 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.10 1.10 6.35 -51.92 -0.33 0.77 16 32 H 0.26 1.39 8.06 -52.48 -0.42 0.97 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.21 7.11 -51.93 -0.37 0.84 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.23 7.86 -51.93 -0.41 0.82 16 39 H 0.06 1.13 5.98 -51.93 -0.31 0.82 16 40 H 0.11 2.89 5.89 -51.93 -0.31 2.58 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 44 H 0.04 0.73 7.79 -51.93 -0.40 0.33 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.12 1.69 3.78 -54.10 -0.20 1.48 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -32.82 361.80 -7.05 -39.88 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.42 Total: 1.60 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -0.17 Total: 10.36 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.65 Total: -57.14 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.24 Total: -16.85 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.82 -7.05 -39.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071155188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.188 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds