Wall clock time and date at job start Tue Mar 31 2020 18:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33698 * 126.27098 * 2 1 4 4 C 1.30608 * 108.99611 * 179.97438 * 3 2 1 5 5 O 1.33662 * 109.15488 * 359.73022 * 4 3 2 6 6 C 1.35339 * 107.68473 * 0.43030 * 5 4 3 7 7 C 1.46728 * 126.64329 * 179.83802 * 6 5 4 8 8 O 1.21681 * 119.99598 * 186.68722 * 7 6 5 9 9 N 1.34774 * 119.99920 * 6.69764 * 7 6 5 10 10 C 1.47160 * 121.05883 * 176.33500 * 9 7 6 11 11 C 1.53272 * 108.55690 * 231.11889 * 10 9 7 12 12 H 1.09001 * 109.50942 * 67.09496 * 11 10 9 13 13 C 1.52998 * 109.51608 * 187.19503 * 11 10 9 14 14 O 1.43107 * 109.22811 * 307.12194 * 11 10 9 15 15 C 1.42067 * 114.31820 * 61.15506 * 14 11 10 16 16 C 1.54512 * 110.33476 * 61.92829 * 15 14 11 17 17 C 1.55018 * 101.52649 * 83.94144 * 16 15 14 18 18 N 1.47482 * 104.90241 * 36.37267 * 17 16 15 19 19 C 1.36935 * 125.66393 * 155.99625 * 18 17 16 20 20 H 1.07997 * 119.99866 * 180.02562 * 19 18 17 21 21 C 1.38817 * 119.99543 * 0.02934 * 19 18 17 22 22 N 1.31615 * 120.00564 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99510 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47149 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46553 * 120.00216 * 23 21 19 26 26 H 1.48498 * 109.47281 * 240.00181 * 23 21 19 27 27 C 1.47180 * 108.67204 * 335.98224 * 18 17 16 28 28 C 1.47303 * 121.06080 * 356.34829 * 9 7 6 29 29 H 1.08995 * 109.47371 * 270.04275 * 1 2 3 30 30 H 1.08996 * 109.47187 * 30.05092 * 1 2 3 31 31 H 1.09008 * 109.46645 * 150.04238 * 1 2 3 32 32 H 1.08005 * 125.42272 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.62307 * 111.39778 * 10 9 7 34 34 H 1.08997 * 109.77989 * 350.93404 * 10 9 7 35 35 H 1.08998 * 109.46943 * 59.99803 * 13 11 10 36 36 H 1.09002 * 109.47000 * 299.99878 * 13 11 10 37 37 H 1.08993 * 109.47361 * 179.97438 * 13 11 10 38 38 H 1.09005 * 111.01136 * 202.00116 * 16 15 14 39 39 H 1.09006 * 111.01385 * 325.87469 * 16 15 14 40 40 H 1.09007 * 110.35410 * 155.23419 * 17 16 15 41 41 H 1.09004 * 110.35134 * 277.51937 * 17 16 15 42 42 H 0.96995 * 120.00081 * 179.97438 * 22 21 19 43 43 H 1.08993 * 109.91168 * 242.13863 * 27 18 17 44 44 H 1.08999 * 109.91022 * 120.87243 * 27 18 17 45 45 H 1.08996 * 109.68273 * 250.32482 * 28 9 7 46 46 H 1.08998 * 109.68315 * 10.87698 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6901 0.0006 5 8 3.5890 -0.6458 0.0069 6 6 2.3137 -1.0991 0.0007 7 6 1.8828 -2.5017 0.0009 8 8 0.7044 -2.7760 -0.1278 9 7 2.7923 -3.4860 0.1439 10 6 2.3785 -4.8957 0.2275 11 6 3.0349 -5.5243 1.4617 12 1 2.6201 -5.0742 2.3637 13 6 2.7663 -7.0305 1.4722 14 8 4.4461 -5.2908 1.4154 15 6 4.8126 -3.9183 1.4264 16 6 4.3386 -3.2464 2.7345 17 6 5.4933 -3.6067 3.7039 18 7 6.7138 -3.5491 2.8780 19 6 7.9836 -3.3352 3.3438 20 1 8.8146 -3.3103 2.6545 21 6 8.2026 -3.1505 4.7021 22 7 7.1900 -3.1814 5.5423 23 14 9.9350 -2.8594 5.3376 24 1 10.8883 -2.8708 4.1992 25 1 9.9966 -1.5424 6.0211 26 1 10.2970 -3.9328 6.2978 27 6 6.3404 -3.7600 1.4701 28 6 4.2321 -3.1849 0.2216 29 1 -0.3634 0.0008 1.0276 30 1 -0.3633 0.8895 -0.5146 31 1 -0.3633 -0.8905 -0.5132 32 1 4.4042 1.3446 0.0003 33 1 2.7011 -5.4257 -0.6686 34 1 1.2941 -4.9570 0.3185 35 1 3.1828 -7.4801 0.5709 36 1 1.6912 -7.2076 1.5031 37 1 3.2337 -7.4768 2.3498 38 1 4.2544 -2.1666 2.6110 39 1 3.3952 -3.6741 3.0740 40 1 5.5490 -2.8796 4.5142 41 1 5.3532 -4.6111 4.1037 42 1 7.3432 -3.0527 6.4914 43 1 6.8182 -4.6632 1.0907 44 1 6.6415 -2.8990 0.8733 45 1 4.7277 -3.5238 -0.6881 46 1 4.3768 -2.1112 0.3408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071155188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:48 Heat of formation + Delta-G solvation = -25.655799 kcal Electronic energy + Delta-G solvation = -30985.843766 eV Core-core repulsion = 26878.277513 eV Total energy + Delta-G solvation = -4107.566253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.57230 -41.83917 -40.12437 -37.94016 -36.77679 -35.72163 -34.80391 -33.13990 -32.59332 -31.09298 -30.09668 -29.33141 -27.69784 -27.15222 -25.57920 -24.48033 -23.42633 -22.73556 -21.92132 -21.35334 -20.54780 -19.01844 -18.82388 -18.13731 -17.96902 -17.67401 -17.21805 -16.86687 -16.39336 -16.16997 -15.74880 -15.62343 -15.50358 -14.96787 -14.78662 -14.50365 -14.26678 -14.17800 -14.11124 -13.76037 -13.56014 -13.25044 -13.18147 -13.00879 -12.93853 -12.85511 -12.78486 -12.30382 -12.25855 -12.19300 -11.99348 -11.94236 -11.88248 -11.54374 -11.47724 -11.23136 -11.00888 -10.76196 -10.12943 -9.62843 -8.92110 -7.77737 -5.22658 -0.30108 1.25735 1.35401 1.48500 1.49461 1.59873 1.75650 1.88314 2.45973 2.59067 3.09212 3.27389 3.33036 3.41621 3.60431 3.63864 3.73698 3.76497 3.95231 4.00269 4.13595 4.19981 4.35510 4.39058 4.42925 4.49106 4.60997 4.65086 4.66932 4.69901 4.78152 4.82523 4.84084 4.92657 5.00148 5.03928 5.10673 5.12508 5.28092 5.33739 5.45469 5.54137 5.73820 5.94125 6.25534 6.28352 6.46247 6.71946 7.08472 7.75086 8.39551 9.25157 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.004199 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.031597 B = 6666.504731 C = 8292.852053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.079 3.921 3 N -0.521 5.521 4 C 0.222 3.778 5 O -0.189 6.189 6 C -0.142 4.142 7 C 0.612 3.388 8 O -0.538 6.538 9 N -0.601 5.601 10 C 0.090 3.910 11 C 0.064 3.936 12 H 0.052 0.948 13 C -0.135 4.135 14 O -0.373 6.373 15 C 0.109 3.891 16 C -0.148 4.148 17 C 0.168 3.832 18 N -0.621 5.621 19 C -0.235 4.235 20 H 0.088 0.912 21 C -0.067 4.067 22 N -0.952 5.952 23 Si 0.981 3.019 24 H -0.263 1.263 25 H -0.291 1.291 26 H -0.296 1.296 27 C 0.149 3.851 28 C 0.088 3.912 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.301 0.699 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.073 0.927 41 H -0.021 1.021 42 H 0.246 0.754 43 H 0.032 0.968 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.417 2.339 -14.302 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 N -0.250 5.250 4 C -0.002 4.002 5 O -0.076 6.076 6 C -0.196 4.196 7 C 0.401 3.599 8 O -0.418 6.418 9 N -0.332 5.332 10 C -0.032 4.032 11 C 0.006 3.994 12 H 0.070 0.930 13 C -0.192 4.192 14 O -0.292 6.292 15 C 0.068 3.932 16 C -0.187 4.187 17 C 0.043 3.957 18 N -0.347 5.347 19 C -0.363 4.363 20 H 0.106 0.894 21 C -0.259 4.259 22 N -0.602 5.602 23 Si 0.809 3.191 24 H -0.187 1.187 25 H -0.218 1.218 26 H -0.224 1.224 27 C 0.024 3.976 28 C -0.034 4.034 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.316 0.684 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.091 0.909 41 H -0.003 1.003 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.923 2.639 -14.227 18.749 hybrid contribution 1.214 -0.396 1.010 1.628 sum -10.709 2.243 -13.217 17.159 Atomic orbital electron populations 1.20448 0.84431 1.04794 1.04137 1.22406 0.99227 0.86453 0.96398 1.70418 1.02268 1.31310 1.20970 1.29610 0.98287 0.79729 0.92573 1.84620 1.28613 1.24842 1.69557 1.22689 0.82233 0.95797 1.18869 1.16505 0.85015 0.81782 0.76639 1.90800 1.16460 1.82104 1.52396 1.48075 1.07005 1.07181 1.70916 1.22511 1.02129 0.79068 0.99480 1.22713 0.81269 0.98737 0.96646 0.93014 1.21704 1.03417 0.90635 1.03464 1.87896 1.23433 1.23516 1.94387 1.22035 0.95200 0.82260 0.93738 1.23281 0.98589 0.99944 0.96887 1.21552 0.83455 0.97162 0.93512 1.44771 1.03642 1.84288 1.02028 1.19530 0.84389 1.40441 0.91966 0.89438 1.25638 1.01444 1.02698 0.96133 1.70064 1.30166 1.57978 1.01984 0.84964 0.79280 0.76700 0.78109 1.18686 1.21762 1.22371 1.21230 0.90403 0.98951 0.87025 1.22738 0.79221 1.02834 0.98638 0.89536 0.88985 0.89175 0.68447 0.88511 0.87220 0.90636 0.88274 0.92456 0.91395 0.91360 0.90925 1.00276 0.94430 0.94957 0.92117 0.88438 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 9.95 71.24 0.71 -0.98 16 2 C 0.08 1.98 7.16 41.83 0.30 2.27 16 3 N -0.52 -12.23 11.26 -303.14 -3.41 -15.65 16 4 C 0.22 4.05 13.21 130.42 1.72 5.77 16 5 O -0.19 -4.37 7.31 -7.02 -0.05 -4.42 16 6 C -0.14 -3.73 6.88 24.05 0.17 -3.56 16 7 C 0.61 17.07 7.68 86.46 0.66 17.73 16 8 O -0.54 -16.20 14.26 -4.29 -0.06 -16.26 16 9 N -0.60 -15.76 2.91 -823.15 -2.40 -18.16 16 10 C 0.09 2.06 5.89 86.34 0.51 2.57 16 11 C 0.06 1.71 3.17 30.68 0.10 1.80 16 12 H 0.05 1.53 6.13 -2.39 -0.01 1.52 16 13 C -0.13 -2.75 9.57 71.98 0.69 -2.07 16 14 O -0.37 -12.75 9.87 -148.97 -1.47 -14.22 16 15 C 0.11 3.71 0.83 -10.22 -0.01 3.70 16 16 C -0.15 -5.76 5.91 31.80 0.19 -5.57 16 17 C 0.17 8.53 5.88 86.88 0.51 9.04 16 18 N -0.62 -31.71 3.40 -692.52 -2.36 -34.07 16 19 C -0.23 -12.89 10.28 84.04 0.86 -12.03 16 20 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 21 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 22 N -0.95 -56.84 10.09 21.65 0.22 -56.62 16 23 Si 0.98 45.00 29.55 68.60 2.03 47.03 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 27 C 0.15 5.98 6.61 86.47 0.57 6.55 16 28 C 0.09 2.37 5.02 86.07 0.43 2.80 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 31 H 0.09 1.99 6.35 -2.38 -0.02 1.98 16 32 H 0.30 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.11 2.38 7.11 -2.39 -0.02 2.36 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 2.58 7.86 -2.38 -0.02 2.56 16 39 H 0.07 2.54 5.98 -2.38 -0.01 2.53 16 40 H 0.07 4.17 5.89 -2.38 -0.01 4.15 16 41 H -0.02 -1.17 8.14 -2.38 -0.02 -1.19 16 42 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.03 1.34 8.06 -2.39 -0.02 1.32 16 44 H 0.06 2.18 7.79 -2.39 -0.02 2.16 16 45 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.12 3.22 3.78 -36.73 -0.14 3.08 16 Total: -1.00 -72.90 361.80 1.25 -71.64 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.88 Total: 15.96 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: 7.88 Total: 24.76 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -7.95 Total: -124.49 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.58 Total: -34.90 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -72.90 1.25 -71.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071155188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.989 kcal (2) G-P(sol) polarization free energy of solvation -72.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds