Wall clock time and date at job start Tue Mar 31 2020 18:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33695 * 126.27175 * 2 1 4 4 C 1.30617 * 108.99332 * 180.27181 * 3 2 1 5 5 O 1.33666 * 109.15616 * 359.73329 * 4 3 2 6 6 C 1.35347 * 107.68195 * 359.97438 * 5 4 3 7 7 C 1.46718 * 126.64255 * 180.02562 * 6 5 4 8 8 O 1.21684 * 120.00451 * 187.45070 * 7 6 5 9 9 N 1.34782 * 119.99946 * 7.45703 * 7 6 5 10 10 C 1.47165 * 121.08156 * 176.52877 * 9 7 6 11 11 C 1.53281 * 108.56279 * 231.26304 * 10 9 7 12 12 H 1.08999 * 109.51210 * 66.96101 * 11 10 9 13 13 C 1.53006 * 109.51007 * 187.06341 * 11 10 9 14 14 O 1.43124 * 109.21729 * 306.98284 * 11 10 9 15 15 C 1.41881 * 114.37774 * 60.89806 * 14 11 10 16 16 C 1.54355 * 110.74882 * 176.68242 * 15 14 11 17 17 C 1.54474 * 102.95624 * 276.11769 * 16 15 14 18 18 N 1.47081 * 107.29065 * 338.87156 * 17 16 15 19 19 C 1.36937 * 125.62615 * 178.88662 * 18 17 16 20 20 H 1.08009 * 119.99681 * 184.81331 * 19 18 17 21 21 C 1.38809 * 120.00568 * 4.81015 * 19 18 17 22 22 N 1.31618 * 119.99729 * 354.78165 * 21 19 18 23 23 Si 1.86799 * 120.00230 * 174.77462 * 21 19 18 24 24 H 1.48499 * 109.47302 * 275.00414 * 23 21 19 25 25 H 1.48496 * 109.46841 * 35.00654 * 23 21 19 26 26 H 1.48503 * 109.46771 * 155.00390 * 23 21 19 27 27 C 1.47571 * 108.74020 * 358.61833 * 18 17 16 28 28 C 1.47335 * 121.07998 * 356.54446 * 9 7 6 29 29 H 1.09001 * 109.47183 * 270.18529 * 1 2 3 30 30 H 1.08995 * 109.47683 * 30.18807 * 1 2 3 31 31 H 1.09005 * 109.46873 * 150.19012 * 1 2 3 32 32 H 1.08006 * 125.42097 * 179.74802 * 4 3 2 33 33 H 1.09003 * 109.62239 * 350.98373 * 10 9 7 34 34 H 1.08998 * 109.62495 * 111.53718 * 10 9 7 35 35 H 1.08994 * 109.47387 * 59.99603 * 13 11 10 36 36 H 1.09003 * 109.46672 * 180.02562 * 13 11 10 37 37 H 1.09001 * 109.46735 * 299.99772 * 13 11 10 38 38 H 1.08995 * 110.73185 * 34.67495 * 16 15 14 39 39 H 1.09005 * 110.72901 * 157.79829 * 16 15 14 40 40 H 1.09000 * 109.99675 * 219.38130 * 17 16 15 41 41 H 1.08997 * 109.76852 * 98.23240 * 17 16 15 42 42 H 0.97004 * 120.00078 * 179.97438 * 22 21 19 43 43 H 1.09001 * 110.37609 * 142.39194 * 27 18 17 44 44 H 1.09001 * 110.37647 * 264.62069 * 27 18 17 45 45 H 1.09001 * 109.67872 * 11.07785 * 28 9 7 46 46 H 1.08995 * 109.70956 * 250.55501 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6899 -0.0059 5 8 3.5890 -0.6460 -0.0039 6 6 2.3137 -1.0991 0.0041 7 6 1.8827 -2.5016 0.0093 8 8 0.7044 -2.7766 -0.1202 9 7 2.7919 -3.4854 0.1579 10 6 2.3787 -4.8953 0.2425 11 6 3.0276 -5.5204 1.4826 12 1 2.6083 -5.0668 2.3806 13 6 2.7571 -7.0263 1.4966 14 8 4.4394 -5.2886 1.4430 15 6 4.8081 -3.9186 1.4452 16 6 6.3436 -3.7656 1.4848 17 6 6.6646 -3.8828 2.9912 18 7 5.4298 -3.5709 3.7269 19 6 5.2876 -3.5845 5.0888 20 1 4.3173 -3.4156 5.5322 21 6 6.3904 -3.8153 5.8996 22 7 7.5510 -4.1226 5.3601 23 14 6.2274 -3.6897 7.7562 24 1 6.3955 -2.2744 8.1733 25 1 4.8847 -4.1712 8.1689 26 1 7.2725 -4.5237 8.4023 27 6 4.3712 -3.2345 2.7553 28 6 4.2317 -3.1842 0.2411 29 1 -0.3633 0.0033 1.0277 30 1 -0.3634 0.8882 -0.5167 31 1 -0.3633 -0.8917 -0.5109 32 1 4.4043 1.3444 -0.0112 33 1 1.2936 -4.9543 0.3281 34 1 2.7075 -5.4274 -0.6502 35 1 3.1781 -7.4795 0.5992 36 1 3.2184 -7.4700 2.3790 37 1 1.6817 -7.2020 1.5221 38 1 6.8256 -4.5648 0.9217 39 1 6.6442 -2.7903 1.1020 40 1 7.4466 -3.1734 3.2620 41 1 6.9868 -4.8983 3.2216 42 1 8.3217 -4.2836 5.9267 43 1 3.4113 -3.6295 3.0880 44 1 4.3098 -2.1547 2.6195 45 1 4.3757 -2.1106 0.3626 46 1 4.7308 -3.5209 -0.6675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071155189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:52 Heat of formation + Delta-G solvation = -28.325735 kcal Electronic energy + Delta-G solvation = -31100.920810 eV Core-core repulsion = 26993.238780 eV Total energy + Delta-G solvation = -4107.682030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.56077 -41.80381 -40.11057 -37.89715 -36.76133 -35.70833 -34.87884 -33.14777 -32.60225 -31.15543 -29.88600 -29.34158 -27.77921 -27.18264 -25.58510 -24.47712 -23.39943 -22.72115 -21.93676 -21.35826 -20.51263 -19.05849 -18.69318 -18.13304 -17.98537 -17.71051 -17.22660 -16.80891 -16.43787 -16.18159 -15.68488 -15.51934 -15.47568 -15.11878 -15.05007 -14.45342 -14.27158 -14.07551 -13.98472 -13.77122 -13.56257 -13.24969 -13.19417 -13.08646 -12.97349 -12.82013 -12.71106 -12.28706 -12.19164 -12.08032 -12.04580 -12.01457 -11.94899 -11.71387 -11.47116 -11.19251 -11.00134 -10.70816 -10.12475 -9.61929 -8.91371 -7.88581 -5.23298 -0.29333 1.26015 1.36675 1.42685 1.44584 1.52610 1.75855 1.89912 2.45629 2.59495 3.10255 3.27646 3.30392 3.41019 3.63954 3.65333 3.70011 3.85544 3.92700 4.01496 4.14320 4.19228 4.35898 4.41095 4.46441 4.55356 4.59544 4.62337 4.65106 4.67245 4.74994 4.82461 4.90150 4.93519 5.00425 5.02602 5.10522 5.11971 5.27187 5.34267 5.39289 5.64802 5.74368 5.95883 6.16282 6.31751 6.46938 6.72536 7.07551 7.72882 8.37467 9.21643 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.004293 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.429568 B = 6520.003277 C = 7564.540687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.078 3.922 3 N -0.522 5.522 4 C 0.223 3.777 5 O -0.187 6.187 6 C -0.140 4.140 7 C 0.610 3.390 8 O -0.540 6.540 9 N -0.603 5.603 10 C 0.092 3.908 11 C 0.067 3.933 12 H 0.039 0.961 13 C -0.133 4.133 14 O -0.367 6.367 15 C 0.103 3.897 16 C -0.115 4.115 17 C 0.190 3.810 18 N -0.618 5.618 19 C -0.248 4.248 20 H 0.071 0.929 21 C -0.056 4.056 22 N -0.944 5.944 23 Si 0.974 3.026 24 H -0.282 1.282 25 H -0.275 1.275 26 H -0.291 1.291 27 C 0.122 3.878 28 C 0.088 3.912 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.304 0.696 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.018 0.982 41 H 0.005 0.995 42 H 0.249 0.751 43 H 0.025 0.975 44 H 0.024 0.976 45 H 0.122 0.878 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.708 4.306 -16.371 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 N -0.251 5.251 4 C -0.001 4.001 5 O -0.075 6.075 6 C -0.195 4.195 7 C 0.399 3.601 8 O -0.420 6.420 9 N -0.334 5.334 10 C -0.030 4.030 11 C 0.009 3.991 12 H 0.057 0.943 13 C -0.191 4.191 14 O -0.286 6.286 15 C 0.061 3.939 16 C -0.153 4.153 17 C 0.065 3.935 18 N -0.344 5.344 19 C -0.377 4.377 20 H 0.089 0.911 21 C -0.250 4.250 22 N -0.592 5.592 23 Si 0.802 3.198 24 H -0.209 1.209 25 H -0.200 1.200 26 H -0.217 1.217 27 C -0.004 4.004 28 C -0.034 4.034 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.319 0.681 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.036 0.964 41 H 0.024 0.976 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.041 0.959 45 H 0.139 0.861 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.217 4.535 -16.265 19.237 hybrid contribution 0.464 -0.382 1.609 1.718 sum -8.753 4.153 -14.656 17.569 Atomic orbital electron populations 1.20443 0.84607 1.04800 1.04024 1.22377 0.99183 0.86529 0.96473 1.70411 1.02383 1.31286 1.21022 1.29658 0.98290 0.79697 0.92441 1.84603 1.28442 1.24848 1.69598 1.22641 0.82320 0.95680 1.18828 1.16549 0.85043 0.81881 0.76659 1.90799 1.16597 1.82105 1.52472 1.48136 1.07353 1.07135 1.70820 1.22494 1.01972 0.79201 0.99290 1.22626 0.81596 0.98651 0.96238 0.94308 1.21680 1.03242 0.90760 1.03379 1.87831 1.22975 1.23492 1.94294 1.22177 0.96329 0.82448 0.92942 1.22741 0.91667 1.03659 0.97270 1.20913 0.87796 0.97112 0.87664 1.44662 1.08024 1.80367 1.01339 1.19301 0.94375 1.42289 0.81685 0.91122 1.25570 0.95362 1.01777 1.02301 1.70169 1.00669 1.53877 1.34515 0.85168 0.77115 0.77515 0.79958 1.20906 1.19980 1.21684 1.22021 0.91764 0.96290 0.90325 1.22771 0.79027 1.02926 0.98724 0.89765 0.88897 0.89221 0.68109 0.87598 0.88026 0.90151 0.92953 0.88538 0.88992 0.87767 0.96414 0.97642 0.94210 0.95717 0.95875 0.86087 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.76 9.95 71.24 0.71 -1.05 16 2 C 0.08 1.97 7.16 41.83 0.30 2.27 16 3 N -0.52 -12.10 11.26 -303.12 -3.41 -15.51 16 4 C 0.22 3.82 13.21 130.42 1.72 5.54 16 5 O -0.19 -4.14 7.32 -7.14 -0.05 -4.19 16 6 C -0.14 -3.71 6.88 24.04 0.17 -3.55 16 7 C 0.61 17.48 7.68 86.46 0.66 18.14 16 8 O -0.54 -16.89 14.26 -4.30 -0.06 -16.95 16 9 N -0.60 -16.18 2.96 -823.33 -2.43 -18.62 16 10 C 0.09 2.23 5.90 86.35 0.51 2.74 16 11 C 0.07 1.96 3.20 30.69 0.10 2.06 16 12 H 0.04 1.36 6.26 -2.39 -0.01 1.34 16 13 C -0.13 -3.07 9.57 71.98 0.69 -2.38 16 14 O -0.37 -12.93 9.92 -148.95 -1.48 -14.41 16 15 C 0.10 3.47 0.83 -10.17 -0.01 3.46 16 16 C -0.12 -3.98 6.12 31.56 0.19 -3.78 16 17 C 0.19 9.34 5.39 86.77 0.47 9.81 16 18 N -0.62 -32.38 3.40 -692.73 -2.36 -34.74 16 19 C -0.25 -14.29 10.27 84.03 0.86 -13.43 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.06 -3.25 5.48 84.86 0.47 -2.78 16 22 N -0.94 -56.82 10.34 21.65 0.22 -56.60 16 23 Si 0.97 46.34 29.56 68.60 2.03 48.37 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 27 C 0.12 5.16 6.18 86.55 0.53 5.69 16 28 C 0.09 2.26 5.14 86.01 0.44 2.71 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 2.05 6.35 -2.38 -0.02 2.04 16 32 H 0.30 1.52 8.06 -2.91 -0.02 1.49 16 33 H 0.11 2.50 7.10 -2.39 -0.02 2.48 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.10 2.95 7.99 -2.38 -0.02 2.93 16 40 H 0.02 0.96 7.38 -2.39 -0.02 0.94 16 41 H 0.01 0.30 7.52 -2.39 -0.02 0.28 16 42 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.02 1.11 6.09 -2.39 -0.01 1.09 16 44 H 0.02 0.98 7.82 -2.39 -0.02 0.96 16 45 H 0.12 3.03 3.78 -34.29 -0.13 2.90 16 46 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -76.41 362.91 1.16 -75.25 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.88 Total: 11.95 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 7.81 Total: 25.45 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -7.98 Total: -125.47 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -1.59 Total: -35.55 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -76.41 1.16 -75.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071155189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.929 kcal (2) G-P(sol) polarization free energy of solvation -76.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds