Wall clock time and date at job start Tue Mar 31 2020 18:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33697 * 126.27319 * 2 1 4 4 C 1.30615 * 108.99119 * 180.25699 * 3 2 1 5 5 O 1.33666 * 109.15964 * 359.76387 * 4 3 2 6 6 C 1.35346 * 107.68188 * 0.02562 * 5 4 3 7 7 C 1.46721 * 126.64418 * 179.97438 * 6 5 4 8 8 O 1.21678 * 119.99824 * 172.78575 * 7 6 5 9 9 N 1.34779 * 119.99747 * 352.78045 * 7 6 5 10 10 C 1.47158 * 121.05745 * 173.41553 * 9 7 6 11 11 C 1.53288 * 108.50146 * 128.53126 * 10 9 7 12 12 H 1.09001 * 109.51185 * 293.05983 * 11 10 9 13 13 C 1.52993 * 109.51568 * 172.95565 * 11 10 9 14 14 O 1.43085 * 109.21916 * 52.97785 * 11 10 9 15 15 C 1.42054 * 114.40149 * 298.85512 * 14 11 10 16 16 C 1.54517 * 110.34083 * 182.57295 * 15 14 11 17 17 C 1.55023 * 101.53211 * 83.93266 * 16 15 14 18 18 N 1.47482 * 104.89865 * 36.37735 * 17 16 15 19 19 C 1.36936 * 125.66082 * 155.94354 * 18 17 16 20 20 H 1.08007 * 119.99692 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00336 * 0.02691 * 19 18 17 22 22 N 1.31610 * 120.00024 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99931 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47033 * 90.00114 * 23 21 19 25 25 H 1.48500 * 109.47186 * 209.99940 * 23 21 19 26 26 H 1.48500 * 109.47141 * 330.00659 * 23 21 19 27 27 C 1.47183 * 108.66948 * 335.98159 * 18 17 16 28 28 C 1.47297 * 121.05709 * 353.12980 * 9 7 6 29 29 H 1.09001 * 109.47105 * 270.13992 * 1 2 3 30 30 H 1.09001 * 109.47173 * 30.13872 * 1 2 3 31 31 H 1.08999 * 109.47071 * 150.13672 * 1 2 3 32 32 H 1.08003 * 125.41910 * 179.79220 * 4 3 2 33 33 H 1.08999 * 109.63075 * 248.23266 * 10 9 7 34 34 H 1.09003 * 109.63115 * 8.62870 * 10 9 7 35 35 H 1.09001 * 109.47263 * 59.99464 * 13 11 10 36 36 H 1.08996 * 109.47450 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.46846 * 300.00147 * 13 11 10 38 38 H 1.09001 * 111.01799 * 201.99816 * 16 15 14 39 39 H 1.09010 * 111.01186 * 325.87416 * 16 15 14 40 40 H 1.09002 * 110.35124 * 155.23737 * 17 16 15 41 41 H 1.09004 * 110.35551 * 277.41529 * 17 16 15 42 42 H 0.96998 * 120.00232 * 179.97438 * 22 21 19 43 43 H 1.08996 * 109.90647 * 242.13344 * 27 18 17 44 44 H 1.09009 * 109.90527 * 120.87622 * 27 18 17 45 45 H 1.09002 * 109.63810 * 349.29931 * 28 9 7 46 46 H 1.08998 * 109.63892 * 109.92101 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6899 -0.0055 5 8 3.5889 -0.6461 -0.0040 6 6 2.3136 -1.0992 0.0021 7 6 1.8826 -2.5017 0.0053 8 8 0.7051 -2.7760 0.1432 9 7 2.7908 -3.4861 -0.1447 10 6 2.4085 -4.9000 -0.0023 11 6 2.9004 -5.6637 -1.2370 12 1 2.3512 -5.3267 -2.1162 13 6 2.6719 -7.1629 -1.0353 14 8 4.2970 -5.4124 -1.4208 15 6 4.6236 -4.0479 -1.6426 16 6 6.1405 -3.8924 -1.8921 17 6 6.2393 -4.2068 -3.4068 18 7 5.0156 -3.6303 -3.9944 19 6 4.8616 -3.2448 -5.2993 20 1 3.9212 -2.8313 -5.6328 21 6 5.9141 -3.3853 -6.1934 22 7 7.0601 -3.8886 -5.7869 23 14 5.7036 -2.8599 -7.9736 24 1 6.0968 -1.4352 -8.1191 25 1 6.5638 -3.7020 -8.8432 26 1 4.2831 -3.0246 -8.3738 27 6 3.9877 -3.5375 -2.9450 28 6 4.1964 -3.1812 -0.4625 29 1 -0.3633 0.0025 1.0277 30 1 -0.3633 0.8887 -0.5160 31 1 -0.3633 -0.8912 -0.5117 32 1 4.4042 1.3443 -0.0101 33 1 2.8700 -5.3158 0.8933 34 1 1.3240 -4.9802 0.0736 35 1 1.6081 -7.3522 -0.8914 36 1 3.0223 -7.7053 -1.9134 37 1 3.2229 -7.4994 -0.1570 38 1 6.4690 -2.8745 -1.6819 39 1 6.7092 -4.6139 -1.3052 40 1 7.1240 -3.7354 -3.8350 41 1 6.2686 -5.2843 -3.5693 42 1 7.7955 -3.9872 -6.4117 43 1 3.1315 -4.1584 -3.2082 44 1 3.6741 -2.5006 -2.8234 45 1 4.2920 -2.1283 -0.7277 46 1 4.8236 -3.4031 0.4009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071155190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:58 Heat of formation + Delta-G solvation = -5.447864 kcal Electronic energy + Delta-G solvation = -31020.043093 eV Core-core repulsion = 26913.353122 eV Total energy + Delta-G solvation = -4106.689971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.63351 -40.58368 -38.84546 -36.33350 -35.73400 -34.62245 -33.23296 -31.83860 -31.35283 -29.46718 -28.43807 -28.30034 -26.49968 -25.74802 -23.98588 -23.46362 -22.20944 -21.51203 -20.45996 -20.12184 -19.11490 -17.68713 -17.20553 -17.01891 -16.86718 -16.63992 -16.04619 -15.26163 -15.09130 -14.81494 -14.49018 -14.18801 -13.91746 -13.84738 -13.48683 -13.41199 -13.22507 -12.95072 -12.61342 -12.36169 -12.28333 -12.23543 -11.98106 -11.68004 -11.58268 -11.24706 -11.11238 -10.98449 -10.95317 -10.88997 -10.53374 -10.42518 -10.22809 -10.13504 -9.87286 -9.67555 -9.63390 -9.13095 -8.68277 -8.45751 -6.87780 -5.68745 -3.10529 0.66949 2.24325 2.26724 2.77968 2.95874 3.37686 3.43092 3.45017 3.80638 3.86851 4.32312 4.44022 4.56098 4.68429 4.88643 5.01398 5.05592 5.12678 5.18927 5.28280 5.42710 5.44234 5.46133 5.51671 5.54813 5.57458 5.64336 5.68781 5.72808 5.80699 5.93264 6.01866 6.08951 6.15358 6.16897 6.27321 6.36733 6.45427 6.52721 6.60136 7.05227 7.38886 7.52109 7.57995 7.58336 7.80819 7.81528 8.31076 9.18264 9.78157 10.42873 11.35156 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.004501 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.325321 B = 6219.967037 C = 7647.006391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.081 3.919 3 N -0.495 5.495 4 C 0.202 3.798 5 O -0.184 6.184 6 C -0.113 4.113 7 C 0.612 3.388 8 O -0.519 6.519 9 N -0.602 5.602 10 C 0.086 3.914 11 C 0.068 3.932 12 H 0.070 0.930 13 C -0.139 4.139 14 O -0.352 6.352 15 C 0.095 3.905 16 C -0.129 4.129 17 C 0.157 3.843 18 N -0.599 5.599 19 C -0.224 4.224 20 H 0.075 0.925 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.282 1.282 27 C 0.123 3.877 28 C 0.085 3.915 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.256 0.744 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.026 0.974 44 H 0.023 0.977 45 H 0.110 0.890 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.756 2.563 15.618 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.043 4.043 3 N -0.224 5.224 4 C -0.023 4.023 5 O -0.070 6.070 6 C -0.168 4.168 7 C 0.400 3.600 8 O -0.398 6.398 9 N -0.334 5.334 10 C -0.036 4.036 11 C 0.010 3.990 12 H 0.087 0.913 13 C -0.197 4.197 14 O -0.271 6.271 15 C 0.054 3.946 16 C -0.168 4.168 17 C 0.032 3.968 18 N -0.325 5.325 19 C -0.352 4.352 20 H 0.093 0.907 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.215 1.215 26 H -0.208 1.208 27 C -0.004 4.004 28 C -0.038 4.038 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.272 0.728 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.041 0.959 45 H 0.127 0.873 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.258 2.841 15.494 17.344 hybrid contribution 0.203 -0.054 -0.960 0.982 sum -7.054 2.787 14.534 16.394 Atomic orbital electron populations 1.20355 0.85372 1.04274 1.03582 1.22042 0.98344 0.86353 0.97536 1.70364 1.01339 1.31333 1.19357 1.28447 0.97619 0.79997 0.96219 1.84675 1.29339 1.23999 1.68989 1.22799 0.81532 0.96017 1.16413 1.16396 0.85168 0.81405 0.77030 1.90828 1.15751 1.81705 1.51513 1.48062 1.09937 1.06383 1.68990 1.22462 1.02648 0.79229 0.99234 1.22481 0.84151 0.96086 0.96315 0.91260 1.21676 1.01722 0.92996 1.03295 1.87870 1.22576 1.24744 1.91938 1.22288 0.98005 0.81575 0.92711 1.23012 0.90678 1.01271 1.01862 1.21953 0.92641 0.96679 0.85485 1.44478 1.08987 1.73468 1.05550 1.19049 0.98078 1.34413 0.83663 0.90685 1.24760 0.96040 1.01217 0.98358 1.69779 1.03143 1.50571 1.33399 0.86084 0.77267 0.77953 0.84267 1.21542 1.21547 1.20764 1.21692 0.93040 0.97154 0.88502 1.22778 0.80336 1.01987 0.98650 0.89995 0.90413 0.88934 0.72819 0.90368 0.87984 0.91037 0.91094 0.91763 0.90606 0.90878 0.87412 0.96359 0.93662 0.95637 0.95947 0.87277 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.80 36.00 0.35 -0.55 16 2 C 0.08 1.10 7.16 -82.47 -0.59 0.51 16 3 N -0.49 -6.40 11.26 -10.88 -0.12 -6.52 16 4 C 0.20 2.10 13.21 52.24 0.69 2.79 16 5 O -0.18 -2.31 7.51 4.41 0.03 -2.28 16 6 C -0.11 -1.61 6.79 -36.84 -0.25 -1.86 16 7 C 0.61 9.30 7.67 -12.83 -0.10 9.20 16 8 O -0.52 -8.46 14.38 5.21 0.07 -8.38 16 9 N -0.60 -8.71 2.95 -174.16 -0.51 -9.22 16 10 C 0.09 1.11 5.93 -3.53 -0.02 1.09 16 11 C 0.07 0.99 3.17 -26.59 -0.08 0.90 16 12 H 0.07 1.14 6.24 -51.93 -0.32 0.81 16 13 C -0.14 -1.59 9.57 37.15 0.36 -1.23 16 14 O -0.35 -6.18 9.90 -35.23 -0.35 -6.53 16 15 C 0.10 1.68 0.81 -89.73 -0.07 1.61 16 16 C -0.13 -2.38 6.21 -24.87 -0.15 -2.53 16 17 C 0.16 3.78 5.89 -2.44 -0.01 3.77 16 18 N -0.60 -15.39 3.40 -170.23 -0.58 -15.97 16 19 C -0.22 -6.27 10.28 -15.06 -0.15 -6.43 16 20 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 21 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.51 10.09 55.49 0.56 -25.95 16 23 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.12 2.63 6.34 -3.32 -0.02 2.61 16 28 C 0.08 1.24 4.82 -3.85 -0.02 1.22 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.14 6.65 -51.93 -0.35 0.80 16 32 H 0.26 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.10 1.27 7.06 -51.93 -0.37 0.90 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.28 8.01 -51.93 -0.42 0.87 16 39 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 40 H 0.11 2.87 5.88 -51.93 -0.31 2.57 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.03 0.58 6.03 -51.93 -0.31 0.27 16 44 H 0.02 0.49 7.61 -51.92 -0.40 0.10 16 45 H 0.11 1.61 4.24 -52.01 -0.22 1.39 16 46 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -33.35 362.66 -7.09 -40.44 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.46 Total: 1.13 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -0.18 Total: 10.79 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.65 Total: -57.66 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.24 Total: -17.19 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.35 -7.09 -40.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071155190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.993 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds