Wall clock time and date at job start Tue Mar 31 2020 18:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33697 * 126.27319 * 2 1 4 4 C 1.30615 * 108.99119 * 180.25699 * 3 2 1 5 5 O 1.33666 * 109.15964 * 359.76387 * 4 3 2 6 6 C 1.35346 * 107.68188 * 0.02562 * 5 4 3 7 7 C 1.46721 * 126.64418 * 179.97438 * 6 5 4 8 8 O 1.21678 * 119.99824 * 172.78575 * 7 6 5 9 9 N 1.34779 * 119.99747 * 352.78045 * 7 6 5 10 10 C 1.47158 * 121.05745 * 173.41553 * 9 7 6 11 11 C 1.53288 * 108.50146 * 128.53126 * 10 9 7 12 12 H 1.09001 * 109.51185 * 293.05983 * 11 10 9 13 13 C 1.52993 * 109.51568 * 172.95565 * 11 10 9 14 14 O 1.43085 * 109.21916 * 52.97785 * 11 10 9 15 15 C 1.42054 * 114.40149 * 298.85512 * 14 11 10 16 16 C 1.54517 * 110.34083 * 182.57295 * 15 14 11 17 17 C 1.55023 * 101.53211 * 83.93266 * 16 15 14 18 18 N 1.47482 * 104.89865 * 36.37735 * 17 16 15 19 19 C 1.36936 * 125.66082 * 155.94354 * 18 17 16 20 20 H 1.08007 * 119.99692 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00336 * 0.02691 * 19 18 17 22 22 N 1.31610 * 120.00024 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99931 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47033 * 90.00114 * 23 21 19 25 25 H 1.48500 * 109.47186 * 209.99940 * 23 21 19 26 26 H 1.48500 * 109.47141 * 330.00659 * 23 21 19 27 27 C 1.47183 * 108.66948 * 335.98159 * 18 17 16 28 28 C 1.47297 * 121.05709 * 353.12980 * 9 7 6 29 29 H 1.09001 * 109.47105 * 270.13992 * 1 2 3 30 30 H 1.09001 * 109.47173 * 30.13872 * 1 2 3 31 31 H 1.08999 * 109.47071 * 150.13672 * 1 2 3 32 32 H 1.08003 * 125.41910 * 179.79220 * 4 3 2 33 33 H 1.08999 * 109.63075 * 248.23266 * 10 9 7 34 34 H 1.09003 * 109.63115 * 8.62870 * 10 9 7 35 35 H 1.09001 * 109.47263 * 59.99464 * 13 11 10 36 36 H 1.08996 * 109.47450 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.46846 * 300.00147 * 13 11 10 38 38 H 1.09001 * 111.01799 * 201.99816 * 16 15 14 39 39 H 1.09010 * 111.01186 * 325.87416 * 16 15 14 40 40 H 1.09002 * 110.35124 * 155.23737 * 17 16 15 41 41 H 1.09004 * 110.35551 * 277.41529 * 17 16 15 42 42 H 0.96998 * 120.00232 * 179.97438 * 22 21 19 43 43 H 1.08996 * 109.90647 * 242.13344 * 27 18 17 44 44 H 1.09009 * 109.90527 * 120.87622 * 27 18 17 45 45 H 1.09002 * 109.63810 * 349.29931 * 28 9 7 46 46 H 1.08998 * 109.63892 * 109.92101 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6899 -0.0055 5 8 3.5889 -0.6461 -0.0040 6 6 2.3136 -1.0992 0.0021 7 6 1.8826 -2.5017 0.0053 8 8 0.7051 -2.7760 0.1432 9 7 2.7908 -3.4861 -0.1447 10 6 2.4085 -4.9000 -0.0023 11 6 2.9004 -5.6637 -1.2370 12 1 2.3512 -5.3267 -2.1162 13 6 2.6719 -7.1629 -1.0353 14 8 4.2970 -5.4124 -1.4208 15 6 4.6236 -4.0479 -1.6426 16 6 6.1405 -3.8924 -1.8921 17 6 6.2393 -4.2068 -3.4068 18 7 5.0156 -3.6303 -3.9944 19 6 4.8616 -3.2448 -5.2993 20 1 3.9212 -2.8313 -5.6328 21 6 5.9141 -3.3853 -6.1934 22 7 7.0601 -3.8886 -5.7869 23 14 5.7036 -2.8599 -7.9736 24 1 6.0968 -1.4352 -8.1191 25 1 6.5638 -3.7020 -8.8432 26 1 4.2831 -3.0246 -8.3738 27 6 3.9877 -3.5375 -2.9450 28 6 4.1964 -3.1812 -0.4625 29 1 -0.3633 0.0025 1.0277 30 1 -0.3633 0.8887 -0.5160 31 1 -0.3633 -0.8912 -0.5117 32 1 4.4042 1.3443 -0.0101 33 1 2.8700 -5.3158 0.8933 34 1 1.3240 -4.9802 0.0736 35 1 1.6081 -7.3522 -0.8914 36 1 3.0223 -7.7053 -1.9134 37 1 3.2229 -7.4994 -0.1570 38 1 6.4690 -2.8745 -1.6819 39 1 6.7092 -4.6139 -1.3052 40 1 7.1240 -3.7354 -3.8350 41 1 6.2686 -5.2843 -3.5693 42 1 7.7955 -3.9872 -6.4117 43 1 3.1315 -4.1584 -3.2082 44 1 3.6741 -2.5006 -2.8234 45 1 4.2920 -2.1283 -0.7277 46 1 4.8236 -3.4031 0.4009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071155190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:57 Heat of formation + Delta-G solvation = -30.057720 kcal Electronic energy + Delta-G solvation = -31021.110257 eV Core-core repulsion = 26913.353122 eV Total energy + Delta-G solvation = -4107.757135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.56341 -41.83522 -40.12004 -37.93141 -36.74775 -35.74378 -34.89054 -33.15961 -32.62035 -31.12344 -29.88801 -29.35463 -27.80137 -27.21072 -25.57472 -24.49055 -23.34646 -22.73395 -22.05966 -21.34873 -20.43486 -19.07976 -18.73168 -18.19351 -17.98420 -17.69298 -17.26024 -16.85942 -16.49715 -16.15242 -15.72830 -15.51277 -15.31856 -15.20082 -14.99713 -14.48615 -14.19573 -14.17425 -14.12742 -13.76108 -13.48288 -13.26359 -13.17992 -13.07699 -13.02436 -12.82677 -12.71673 -12.33542 -12.19139 -12.15128 -12.04680 -12.00846 -11.94673 -11.67438 -11.48715 -11.21739 -11.03016 -10.77909 -10.14841 -9.63017 -8.95265 -7.81671 -5.26933 -0.30696 1.27520 1.34456 1.43817 1.45353 1.54111 1.73473 1.89910 2.44927 2.55275 3.09160 3.25355 3.29548 3.40361 3.62122 3.64306 3.72138 3.78979 3.93138 4.00520 4.13278 4.19674 4.34951 4.39904 4.44429 4.52230 4.57833 4.63002 4.64027 4.65480 4.75846 4.79024 4.90465 4.95635 4.98452 5.01346 5.06625 5.11022 5.26669 5.30144 5.39680 5.59783 5.76492 5.93962 6.24635 6.27234 6.45159 6.70919 7.06409 7.71143 8.35376 9.19798 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.004501 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.325321 B = 6219.967037 C = 7647.006391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.077 3.923 3 N -0.522 5.522 4 C 0.224 3.776 5 O -0.188 6.188 6 C -0.142 4.142 7 C 0.609 3.391 8 O -0.539 6.539 9 N -0.605 5.605 10 C 0.091 3.909 11 C 0.064 3.936 12 H 0.040 0.960 13 C -0.133 4.133 14 O -0.368 6.368 15 C 0.105 3.895 16 C -0.114 4.114 17 C 0.160 3.840 18 N -0.619 5.619 19 C -0.246 4.246 20 H 0.071 0.929 21 C -0.057 4.057 22 N -0.942 5.942 23 Si 0.978 3.022 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.276 1.276 27 C 0.124 3.876 28 C 0.096 3.904 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.305 0.695 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.080 0.920 41 H -0.017 1.017 42 H 0.250 0.750 43 H 0.009 0.991 44 H 0.019 0.981 45 H 0.111 0.889 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 3.431 17.295 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.046 4.046 3 N -0.251 5.251 4 C 0.000 4.000 5 O -0.076 6.076 6 C -0.196 4.196 7 C 0.398 3.602 8 O -0.419 6.419 9 N -0.337 5.337 10 C -0.031 4.031 11 C 0.006 3.994 12 H 0.058 0.942 13 C -0.190 4.190 14 O -0.287 6.287 15 C 0.064 3.936 16 C -0.152 4.152 17 C 0.036 3.964 18 N -0.345 5.345 19 C -0.375 4.375 20 H 0.089 0.911 21 C -0.250 4.250 22 N -0.591 5.591 23 Si 0.806 3.194 24 H -0.207 1.207 25 H -0.216 1.216 26 H -0.202 1.202 27 C -0.002 4.002 28 C -0.027 4.027 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.320 0.680 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.001 0.999 42 H 0.060 0.940 43 H 0.027 0.973 44 H 0.037 0.963 45 H 0.128 0.872 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.185 3.706 17.192 18.998 hybrid contribution 0.155 -0.292 -1.521 1.556 sum -7.030 3.414 15.671 17.512 Atomic orbital electron populations 1.20384 0.84573 1.04133 1.04358 1.22387 0.99214 0.86567 0.96481 1.70406 1.02389 1.31277 1.21060 1.29637 0.98309 0.79541 0.92476 1.84643 1.28559 1.25007 1.69346 1.22642 0.82354 0.95741 1.18867 1.16538 0.85003 0.81949 0.76690 1.90806 1.16384 1.82180 1.52513 1.48127 1.09798 1.06904 1.68824 1.22516 1.03128 0.78347 0.99080 1.22663 0.82334 0.98322 0.96102 0.94169 1.21687 1.03617 0.90422 1.03294 1.87852 1.24442 1.24514 1.91922 1.22116 0.96971 0.82437 0.92057 1.22876 0.91763 1.03103 0.97505 1.21716 0.91205 0.94075 0.89435 1.44755 1.10637 1.73294 1.05796 1.19337 0.98121 1.34742 0.85315 0.91122 1.25560 0.95798 1.01445 1.02201 1.70015 1.03576 1.51202 1.34348 0.85096 0.77264 0.77646 0.79398 1.20696 1.21589 1.20176 1.21788 0.91994 0.96726 0.89697 1.22655 0.80844 1.01185 0.98001 0.88710 0.89321 0.90183 0.68010 0.87851 0.87523 0.88530 0.92619 0.90079 0.88555 0.88565 0.90193 0.99864 0.94036 0.97279 0.96270 0.87180 0.87479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.73 9.80 71.23 0.70 -1.03 16 2 C 0.08 2.02 7.16 41.83 0.30 2.32 16 3 N -0.52 -12.49 11.26 -303.13 -3.41 -15.90 16 4 C 0.22 4.00 13.21 130.42 1.72 5.72 16 5 O -0.19 -4.32 7.51 -7.13 -0.05 -4.37 16 6 C -0.14 -3.87 6.79 24.05 0.16 -3.71 16 7 C 0.61 17.99 7.67 86.46 0.66 18.65 16 8 O -0.54 -17.34 14.38 -4.28 -0.06 -17.40 16 9 N -0.61 -16.59 2.95 -823.13 -2.43 -19.01 16 10 C 0.09 2.18 5.93 86.35 0.51 2.69 16 11 C 0.06 1.81 3.17 30.69 0.10 1.90 16 12 H 0.04 1.36 6.24 -2.39 -0.01 1.35 16 13 C -0.13 -2.84 9.57 71.98 0.69 -2.15 16 14 O -0.37 -12.61 9.90 -148.97 -1.47 -14.09 16 15 C 0.11 3.63 0.81 -10.22 -0.01 3.62 16 16 C -0.11 -4.05 6.21 31.80 0.20 -3.85 16 17 C 0.16 7.93 5.89 86.88 0.51 8.44 16 18 N -0.62 -32.70 3.40 -692.48 -2.36 -35.06 16 19 C -0.25 -14.18 10.28 84.03 0.86 -13.31 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 21 C -0.06 -3.24 5.49 84.86 0.47 -2.77 16 22 N -0.94 -55.67 10.09 21.65 0.22 -55.46 16 23 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 27 C 0.12 5.42 6.34 86.47 0.55 5.97 16 28 C 0.10 2.58 4.82 86.07 0.41 2.99 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.98 6.65 -2.39 -0.02 1.97 16 32 H 0.31 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.11 2.48 7.06 -2.39 -0.02 2.47 16 35 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 3.04 8.01 -2.39 -0.02 3.02 16 39 H 0.10 2.99 8.14 -2.38 -0.02 2.98 16 40 H 0.08 4.40 5.88 -2.39 -0.01 4.39 16 41 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 42 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.01 0.44 6.03 -2.39 -0.01 0.43 16 44 H 0.02 0.86 7.61 -2.38 -0.02 0.84 16 45 H 0.11 3.01 4.24 -3.65 -0.02 3.00 16 46 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -75.17 362.66 1.30 -73.87 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 1.00 Total: 14.03 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: 7.84 Total: 25.49 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -7.98 Total: -125.43 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -1.59 Total: -35.86 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -75.17 1.30 -73.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071155190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.813 kcal (2) G-P(sol) polarization free energy of solvation -75.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds