Wall clock time and date at job start Tue Mar 31 2020 19:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29935 * 125.37973 * 2 1 4 4 C 1.36071 * 108.47549 * 180.16354 * 3 2 1 5 5 C 1.47420 * 126.44580 * 179.82137 * 4 3 2 6 6 O 1.21611 * 119.99588 * 186.64522 * 5 4 3 7 7 N 1.34769 * 120.00252 * 6.92528 * 5 4 3 8 8 C 1.47168 * 121.08167 * 186.15772 * 7 5 4 9 9 C 1.53283 * 108.55405 * 231.23476 * 8 7 5 10 10 H 1.09005 * 109.51091 * 66.89477 * 9 8 7 11 11 C 1.53009 * 109.50839 * 186.99084 * 9 8 7 12 12 O 1.43116 * 109.22217 * 306.96511 * 9 8 7 13 13 C 1.41882 * 114.39634 * 60.88785 * 12 9 8 14 14 C 1.54361 * 110.73744 * 176.75653 * 13 12 9 15 15 C 1.54458 * 102.87650 * 276.33388 * 14 13 12 16 16 N 1.47078 * 107.29443 * 338.50213 * 15 14 13 17 17 C 1.36943 * 125.62894 * 178.99063 * 16 15 14 18 18 H 1.08003 * 119.99935 * 180.02562 * 17 16 15 19 19 C 1.38808 * 119.99900 * 0.02562 * 17 16 15 20 20 N 1.31617 * 120.00343 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99793 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46986 * 90.00492 * 21 19 17 23 23 H 1.48509 * 109.46924 * 210.00291 * 21 19 17 24 24 H 1.48496 * 109.47063 * 329.99926 * 21 19 17 25 25 C 1.47571 * 108.74138 * 359.00829 * 16 15 14 26 26 C 1.47330 * 121.07838 * 5.87546 * 7 5 4 27 27 C 1.36089 * 107.10220 * 359.55942 * 4 3 2 28 28 O 1.34051 * 125.37752 * 179.66777 * 2 1 3 29 29 H 1.08998 * 109.47296 * 180.35094 * 1 2 3 30 30 H 1.08996 * 109.47412 * 300.35343 * 1 2 3 31 31 H 1.09000 * 109.46792 * 60.34929 * 1 2 3 32 32 H 1.09000 * 109.62048 * 350.95777 * 8 7 5 33 33 H 1.08998 * 109.62591 * 111.51596 * 8 7 5 34 34 H 1.09005 * 109.46872 * 60.00442 * 11 9 8 35 35 H 1.08996 * 109.46465 * 180.02562 * 11 9 8 36 36 H 1.08997 * 109.47200 * 299.99831 * 11 9 8 37 37 H 1.09002 * 110.73313 * 34.68152 * 14 13 12 38 38 H 1.08998 * 110.73222 * 157.98109 * 14 13 12 39 39 H 1.09005 * 109.87999 * 97.93088 * 15 14 13 40 40 H 1.09004 * 109.87811 * 218.92335 * 15 14 13 41 41 H 0.96994 * 120.00201 * 179.97438 * 20 19 17 42 42 H 1.09004 * 110.37704 * 264.49072 * 25 16 15 43 43 H 1.08996 * 110.37541 * 142.14432 * 25 16 15 44 44 H 1.09000 * 109.64690 * 250.55025 * 26 7 5 45 45 H 1.09001 * 109.64300 * 11.19062 * 26 7 5 46 46 H 1.07998 * 126.52177 * 180.30278 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6637 -0.0037 5 6 4.7439 1.5437 -0.0087 6 8 5.8558 1.0672 -0.1335 7 7 4.5935 2.8757 0.1308 8 6 5.7402 3.7882 -0.0046 9 6 5.7794 4.7075 1.2214 10 1 6.0100 4.1197 2.1099 11 6 6.8547 5.7778 1.0233 12 8 4.5029 5.3346 1.3810 13 6 3.4286 4.4320 1.5913 14 6 2.1104 5.1979 1.8326 15 6 2.1740 5.5261 3.3406 16 7 3.1108 4.5738 3.9561 17 6 3.4610 4.5417 5.2796 18 1 4.1609 3.7999 5.6351 19 6 2.9164 5.4624 6.1641 20 7 2.0631 6.3661 5.7310 21 14 3.3947 5.4190 7.9694 22 1 4.5816 6.2843 8.1879 23 1 2.2628 5.9142 8.7934 24 1 3.7198 4.0243 8.3619 25 6 3.6112 3.6589 2.9119 26 6 3.2745 3.4662 0.4176 27 6 3.5659 -0.6971 0.0041 28 8 2.2831 -1.0930 0.0063 29 1 -0.3634 -1.0276 0.0063 30 1 -0.3634 0.5193 0.8867 31 1 -0.3633 0.5084 -0.8931 32 1 6.6630 3.2107 -0.0588 33 1 5.6266 4.3874 -0.9080 34 1 6.6224 6.3662 0.1356 35 1 6.8823 6.4308 1.8955 36 1 7.8256 5.2985 0.8978 37 1 2.0812 6.1121 1.2396 38 1 1.2506 4.5656 1.6111 39 1 2.5340 6.5450 3.4833 40 1 1.1850 5.4169 3.7857 41 1 1.6824 7.0092 6.3492 42 1 3.0240 2.7407 2.8985 43 1 4.6648 3.4341 3.0776 44 1 2.9157 4.0051 -0.4593 45 1 2.5694 2.6777 0.6808 46 1 4.4361 -1.3368 0.0083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071159586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:59 Heat of formation + Delta-G solvation = -4.133497 kcal Electronic energy + Delta-G solvation = -30866.765801 eV Core-core repulsion = 26760.132825 eV Total energy + Delta-G solvation = -4106.632976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.64705 -40.41398 -38.66623 -36.17137 -35.35173 -34.39674 -33.05645 -32.41418 -31.27147 -29.33933 -28.22483 -28.10128 -26.88465 -25.65463 -23.87973 -23.42509 -22.01779 -21.47089 -20.17214 -19.89907 -18.95546 -17.72467 -17.14941 -16.92993 -16.74523 -16.47895 -15.79771 -15.20391 -14.86463 -14.62444 -14.37717 -14.14052 -13.94299 -13.85120 -13.44560 -13.40071 -13.33614 -12.99153 -12.80596 -12.46213 -12.16824 -12.12984 -11.95945 -11.71102 -11.49099 -11.38886 -11.00441 -10.83867 -10.80699 -10.65241 -10.40702 -10.18359 -10.18139 -10.05094 -9.64125 -9.59778 -9.46805 -9.18071 -8.54160 -8.26488 -6.76341 -5.66179 -2.98690 0.94113 1.80353 2.36628 2.84304 3.20120 3.42675 3.47515 3.49262 3.63312 4.01254 4.40988 4.52763 4.58029 4.86081 5.01539 5.10821 5.12802 5.18441 5.23550 5.24422 5.37127 5.40063 5.46821 5.53545 5.59388 5.61172 5.70111 5.75930 5.78485 5.82970 5.95387 6.16015 6.18880 6.26158 6.33752 6.47787 6.54092 6.56788 6.64655 6.70485 7.21305 7.40138 7.59073 7.69146 7.80573 7.88884 8.04277 8.31006 9.27158 9.86879 10.53445 11.45648 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010979 B = 0.004296 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.673700 B = 6516.675626 C = 7752.319144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.200 3.800 3 N -0.458 5.458 4 C -0.064 4.064 5 C 0.604 3.396 6 O -0.544 6.544 7 N -0.593 5.593 8 C 0.084 3.916 9 C 0.072 3.928 10 H 0.067 0.933 11 C -0.139 4.139 12 O -0.349 6.349 13 C 0.091 3.909 14 C -0.128 4.128 15 C 0.183 3.817 16 N -0.598 5.598 17 C -0.225 4.225 18 H 0.074 0.926 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.123 3.877 26 C 0.073 3.927 27 C 0.010 3.990 28 O -0.196 6.196 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.252 0.748 42 H 0.020 0.980 43 H 0.037 0.963 44 H 0.070 0.930 45 H 0.141 0.859 46 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 -10.838 -15.895 19.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.008 4.008 3 N -0.189 5.189 4 C -0.183 4.183 5 C 0.391 3.609 6 O -0.423 6.423 7 N -0.324 5.324 8 C -0.039 4.039 9 C 0.013 3.987 10 H 0.085 0.915 11 C -0.197 4.197 12 O -0.268 6.268 13 C 0.050 3.950 14 C -0.167 4.167 15 C 0.058 3.942 16 N -0.324 5.324 17 C -0.354 4.354 18 H 0.092 0.908 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.208 1.208 25 C -0.004 4.004 26 C -0.049 4.049 27 C -0.063 4.063 28 O -0.083 6.083 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.157 0.843 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.383 -10.161 -15.756 18.752 hybrid contribution 0.631 -0.834 1.013 1.456 sum 0.247 -10.995 -14.743 18.394 Atomic orbital electron populations 1.20364 0.80754 1.04995 1.05680 1.26537 0.96774 0.78366 0.99150 1.70685 1.00810 1.28855 1.18513 1.21706 0.92011 0.92938 1.11646 1.16772 0.86156 0.81385 0.76556 1.90789 1.24660 1.74813 1.52028 1.47968 1.10594 1.05106 1.68701 1.22448 0.90047 0.92125 0.99257 1.22426 0.85650 0.94347 0.96233 0.91484 1.21670 0.96282 0.98484 1.03222 1.87822 1.14319 1.32460 1.92213 1.22450 0.88858 0.90305 0.93391 1.22817 0.93143 0.99562 1.01145 1.21146 0.94044 0.94008 0.84958 1.44407 1.50393 1.33869 1.03714 1.19018 1.21427 1.12703 0.82221 0.90778 1.24760 0.99460 0.98001 0.98078 1.69958 1.33364 1.20247 1.33275 0.86145 0.77462 0.77452 0.84872 1.21629 1.21657 1.20812 1.21887 0.97321 0.92890 0.88314 1.23189 0.84447 0.99269 0.98041 1.25206 0.84840 0.95513 1.00766 1.84394 1.16692 1.37924 1.69261 0.89207 0.87814 0.88170 0.88359 0.90663 0.91915 0.91059 0.91254 0.90972 0.90877 0.93259 0.93871 0.93808 0.96240 0.94446 0.91199 0.84252 0.75355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.00 0.38 0.01 16 2 C 0.20 2.10 8.30 -13.08 -0.11 2.00 16 3 N -0.46 -6.08 7.87 -7.65 -0.06 -6.14 16 4 C -0.06 -0.89 6.67 -83.02 -0.55 -1.45 16 5 C 0.60 9.69 7.70 -12.52 -0.10 9.60 16 6 O -0.54 -9.52 16.37 5.27 0.09 -9.43 16 7 N -0.59 -9.40 2.95 -173.71 -0.51 -9.91 16 8 C 0.08 1.22 5.92 -3.53 -0.02 1.20 16 9 C 0.07 1.18 3.20 -26.58 -0.08 1.09 16 10 H 0.07 1.23 6.26 -51.93 -0.32 0.91 16 11 C -0.14 -1.85 9.57 37.16 0.36 -1.49 16 12 O -0.35 -6.78 9.92 -35.22 -0.35 -7.13 16 13 C 0.09 1.73 0.83 -89.44 -0.07 1.66 16 14 C -0.13 -2.47 6.12 -25.25 -0.15 -2.62 16 15 C 0.18 4.57 5.38 -2.96 -0.02 4.55 16 16 N -0.60 -15.84 3.40 -170.32 -0.58 -16.42 16 17 C -0.23 -6.49 10.28 -15.06 -0.15 -6.64 16 18 H 0.07 2.09 7.83 -52.48 -0.41 1.68 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -27.46 10.31 55.49 0.57 -26.89 16 21 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.12 2.73 6.19 -2.87 -0.02 2.71 16 26 C 0.07 1.17 4.93 -3.70 -0.02 1.15 16 27 C 0.01 0.12 11.95 29.96 0.36 0.48 16 28 O -0.20 -2.07 10.73 6.51 0.07 -2.00 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.10 1.39 7.06 -51.93 -0.37 1.02 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.25 8.00 -51.93 -0.42 0.83 16 39 H 0.05 1.38 7.39 -51.93 -0.38 1.00 16 40 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.02 0.45 7.83 -51.93 -0.41 0.04 16 43 H 0.04 0.86 6.10 -51.93 -0.32 0.55 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.14 2.24 4.12 -53.50 -0.22 2.02 16 46 H 0.23 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -35.05 367.19 -7.16 -42.21 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.60 Total: 0.68 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -0.30 Total: 11.94 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.58 Total: -59.35 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.19 Total: -18.57 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.05 -7.16 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071159586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.078 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds