Wall clock time and date at job start Tue Mar 31 2020 19:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29935 * 125.37973 * 2 1 4 4 C 1.36071 * 108.47549 * 180.16354 * 3 2 1 5 5 C 1.47420 * 126.44580 * 179.82137 * 4 3 2 6 6 O 1.21611 * 119.99588 * 186.64522 * 5 4 3 7 7 N 1.34769 * 120.00252 * 6.92528 * 5 4 3 8 8 C 1.47168 * 121.08167 * 186.15772 * 7 5 4 9 9 C 1.53283 * 108.55405 * 231.23476 * 8 7 5 10 10 H 1.09005 * 109.51091 * 66.89477 * 9 8 7 11 11 C 1.53009 * 109.50839 * 186.99084 * 9 8 7 12 12 O 1.43116 * 109.22217 * 306.96511 * 9 8 7 13 13 C 1.41882 * 114.39634 * 60.88785 * 12 9 8 14 14 C 1.54361 * 110.73744 * 176.75653 * 13 12 9 15 15 C 1.54458 * 102.87650 * 276.33388 * 14 13 12 16 16 N 1.47078 * 107.29443 * 338.50213 * 15 14 13 17 17 C 1.36943 * 125.62894 * 178.99063 * 16 15 14 18 18 H 1.08003 * 119.99935 * 180.02562 * 17 16 15 19 19 C 1.38808 * 119.99900 * 0.02562 * 17 16 15 20 20 N 1.31617 * 120.00343 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99793 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46986 * 90.00492 * 21 19 17 23 23 H 1.48509 * 109.46924 * 210.00291 * 21 19 17 24 24 H 1.48496 * 109.47063 * 329.99926 * 21 19 17 25 25 C 1.47571 * 108.74138 * 359.00829 * 16 15 14 26 26 C 1.47330 * 121.07838 * 5.87546 * 7 5 4 27 27 C 1.36089 * 107.10220 * 359.55942 * 4 3 2 28 28 O 1.34051 * 125.37752 * 179.66777 * 2 1 3 29 29 H 1.08998 * 109.47296 * 180.35094 * 1 2 3 30 30 H 1.08996 * 109.47412 * 300.35343 * 1 2 3 31 31 H 1.09000 * 109.46792 * 60.34929 * 1 2 3 32 32 H 1.09000 * 109.62048 * 350.95777 * 8 7 5 33 33 H 1.08998 * 109.62591 * 111.51596 * 8 7 5 34 34 H 1.09005 * 109.46872 * 60.00442 * 11 9 8 35 35 H 1.08996 * 109.46465 * 180.02562 * 11 9 8 36 36 H 1.08997 * 109.47200 * 299.99831 * 11 9 8 37 37 H 1.09002 * 110.73313 * 34.68152 * 14 13 12 38 38 H 1.08998 * 110.73222 * 157.98109 * 14 13 12 39 39 H 1.09005 * 109.87999 * 97.93088 * 15 14 13 40 40 H 1.09004 * 109.87811 * 218.92335 * 15 14 13 41 41 H 0.96994 * 120.00201 * 179.97438 * 20 19 17 42 42 H 1.09004 * 110.37704 * 264.49072 * 25 16 15 43 43 H 1.08996 * 110.37541 * 142.14432 * 25 16 15 44 44 H 1.09000 * 109.64690 * 250.55025 * 26 7 5 45 45 H 1.09001 * 109.64300 * 11.19062 * 26 7 5 46 46 H 1.07998 * 126.52177 * 180.30278 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6637 -0.0037 5 6 4.7439 1.5437 -0.0087 6 8 5.8558 1.0672 -0.1335 7 7 4.5935 2.8757 0.1308 8 6 5.7402 3.7882 -0.0046 9 6 5.7794 4.7075 1.2214 10 1 6.0100 4.1197 2.1099 11 6 6.8547 5.7778 1.0233 12 8 4.5029 5.3346 1.3810 13 6 3.4286 4.4320 1.5913 14 6 2.1104 5.1979 1.8326 15 6 2.1740 5.5261 3.3406 16 7 3.1108 4.5738 3.9561 17 6 3.4610 4.5417 5.2796 18 1 4.1609 3.7999 5.6351 19 6 2.9164 5.4624 6.1641 20 7 2.0631 6.3661 5.7310 21 14 3.3947 5.4190 7.9694 22 1 4.5816 6.2843 8.1879 23 1 2.2628 5.9142 8.7934 24 1 3.7198 4.0243 8.3619 25 6 3.6112 3.6589 2.9119 26 6 3.2745 3.4662 0.4176 27 6 3.5659 -0.6971 0.0041 28 8 2.2831 -1.0930 0.0063 29 1 -0.3634 -1.0276 0.0063 30 1 -0.3634 0.5193 0.8867 31 1 -0.3633 0.5084 -0.8931 32 1 6.6630 3.2107 -0.0588 33 1 5.6266 4.3874 -0.9080 34 1 6.6224 6.3662 0.1356 35 1 6.8823 6.4308 1.8955 36 1 7.8256 5.2985 0.8978 37 1 2.0812 6.1121 1.2396 38 1 1.2506 4.5656 1.6111 39 1 2.5340 6.5450 3.4833 40 1 1.1850 5.4169 3.7857 41 1 1.6824 7.0092 6.3492 42 1 3.0240 2.7407 2.8985 43 1 4.6648 3.4341 3.0776 44 1 2.9157 4.0051 -0.4593 45 1 2.5694 2.6777 0.6808 46 1 4.4361 -1.3368 0.0083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071159586.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:58 Heat of formation + Delta-G solvation = -29.561616 kcal Electronic energy + Delta-G solvation = -30867.868447 eV Core-core repulsion = 26760.132825 eV Total energy + Delta-G solvation = -4107.735622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.50581 -41.76760 -40.04351 -37.86614 -36.38858 -35.56876 -34.82079 -33.23391 -32.90579 -31.11678 -29.79224 -28.94033 -28.02486 -27.42984 -25.54352 -24.56524 -23.21149 -22.61569 -21.89159 -21.19714 -20.29838 -19.05775 -18.75363 -18.03369 -17.90777 -17.65224 -17.10556 -16.80382 -16.51156 -16.03971 -15.72703 -15.53926 -15.20261 -15.13759 -14.84889 -14.61738 -14.27899 -13.98261 -13.88065 -13.81089 -13.59969 -13.28311 -13.22754 -13.18168 -13.01917 -12.81427 -12.73342 -12.34392 -12.27277 -12.07970 -12.05900 -11.98147 -11.74748 -11.69442 -11.63266 -11.00195 -10.81589 -10.71472 -10.08174 -9.57030 -8.91580 -7.87104 -5.22682 0.02457 0.89274 1.42117 1.44640 1.53124 1.54633 1.74196 2.10167 2.46108 2.61124 2.79349 3.30221 3.38840 3.49663 3.70596 3.71916 3.77487 3.92513 3.95620 4.04493 4.20186 4.37634 4.40434 4.41489 4.52852 4.56794 4.59640 4.63239 4.67103 4.71620 4.75318 4.77216 4.90814 4.93363 4.95779 5.02064 5.10662 5.17383 5.26139 5.38282 5.45338 5.64605 5.75238 6.09117 6.16479 6.34901 6.44213 6.86426 7.07916 7.73068 8.38392 9.23141 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010979 B = 0.004296 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.673700 B = 6516.675626 C = 7752.319144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.207 3.793 3 N -0.486 5.486 4 C -0.101 4.101 5 C 0.600 3.400 6 O -0.567 6.567 7 N -0.599 5.599 8 C 0.089 3.911 9 C 0.068 3.932 10 H 0.037 0.963 11 C -0.132 4.132 12 O -0.370 6.370 13 C 0.101 3.899 14 C -0.114 4.114 15 C 0.192 3.808 16 N -0.618 5.618 17 C -0.247 4.247 18 H 0.072 0.928 19 C -0.059 4.059 20 N -0.946 5.946 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.272 1.272 25 C 0.125 3.875 26 C 0.087 3.913 27 C 0.029 3.971 28 O -0.193 6.193 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.008 0.992 40 H 0.015 0.985 41 H 0.249 0.751 42 H 0.020 0.980 43 H 0.023 0.977 44 H 0.089 0.911 45 H 0.144 0.856 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 -12.182 -17.365 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.002 4.002 3 N -0.217 5.217 4 C -0.219 4.219 5 C 0.390 3.610 6 O -0.447 6.447 7 N -0.330 5.330 8 C -0.033 4.033 9 C 0.010 3.990 10 H 0.055 0.945 11 C -0.190 4.190 12 O -0.289 6.289 13 C 0.059 3.941 14 C -0.153 4.153 15 C 0.067 3.933 16 N -0.344 5.344 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.253 4.253 20 N -0.595 5.595 21 Si 0.805 3.195 22 H -0.213 1.213 23 H -0.214 1.214 24 H -0.196 1.196 25 C -0.001 4.001 26 C -0.036 4.036 27 C -0.045 4.045 28 O -0.079 6.079 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.027 0.973 40 H 0.033 0.967 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.041 0.959 44 H 0.107 0.893 45 H 0.161 0.839 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -0.698 -11.516 -17.249 20.752 hybrid contribution 0.732 -0.480 1.486 1.724 sum 0.033 -11.996 -15.763 19.809 Atomic orbital electron populations 1.20649 0.77716 1.06886 1.06526 1.27402 0.98115 0.77678 0.96995 1.70553 1.00715 1.30182 1.20217 1.21605 0.91914 0.93753 1.14631 1.17065 0.86624 0.81480 0.75862 1.90761 1.25654 1.75110 1.53170 1.48053 1.10733 1.05438 1.68767 1.22449 0.90079 0.91820 0.98937 1.22589 0.85087 0.95321 0.95988 0.94501 1.21677 0.96540 0.97683 1.03078 1.87797 1.15462 1.33422 1.92237 1.22342 0.88628 0.90256 0.92847 1.22714 0.94600 1.01079 0.96870 1.20884 0.91920 0.91828 0.88655 1.44680 1.50905 1.34830 1.03968 1.19338 1.21541 1.12878 0.83834 0.91056 1.25601 0.99587 0.97725 1.02346 1.70174 1.34182 1.20692 1.34419 0.85107 0.76988 0.77821 0.79566 1.21333 1.21402 1.19648 1.21964 0.96093 0.92678 0.89336 1.23042 0.84802 0.98624 0.97117 1.25689 0.85699 0.94920 0.98195 1.84443 1.16481 1.37929 1.69082 0.86838 0.87575 0.86461 0.87929 0.88486 0.90230 0.92916 0.88567 0.89238 0.88099 0.97324 0.96699 0.94209 0.96217 0.95854 0.89314 0.83927 0.72856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 71.24 0.75 0.20 16 2 C 0.21 3.88 8.30 88.39 0.73 4.61 16 3 N -0.49 -12.08 7.87 -293.04 -2.31 -14.39 16 4 C -0.10 -2.70 6.67 40.41 0.27 -2.43 16 5 C 0.60 18.78 7.70 86.66 0.67 19.44 16 6 O -0.57 -19.44 16.37 -4.07 -0.07 -19.51 16 7 N -0.60 -18.36 2.95 -821.76 -2.42 -20.78 16 8 C 0.09 2.48 5.92 86.35 0.51 2.99 16 9 C 0.07 2.22 3.20 30.69 0.10 2.31 16 10 H 0.04 1.41 6.26 -2.38 -0.01 1.39 16 11 C -0.13 -3.39 9.57 71.99 0.69 -2.70 16 12 O -0.37 -14.30 9.92 -148.95 -1.48 -15.78 16 13 C 0.10 3.77 0.83 -10.03 -0.01 3.77 16 14 C -0.11 -4.34 6.12 31.55 0.19 -4.15 16 15 C 0.19 9.91 5.38 86.76 0.47 10.38 16 16 N -0.62 -33.81 3.40 -692.76 -2.36 -36.17 16 17 C -0.25 -14.67 10.28 84.03 0.86 -13.80 16 18 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 19 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 20 N -0.95 -58.26 10.31 21.65 0.22 -58.04 16 21 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 C 0.13 5.69 6.19 86.55 0.54 6.23 16 26 C 0.09 2.65 4.93 86.15 0.42 3.07 16 27 C 0.03 0.60 11.95 67.32 0.80 1.40 16 28 O -0.19 -3.62 10.73 0.39 0.00 -3.62 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 2.78 7.06 -2.39 -0.02 2.76 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.10 3.27 8.00 -2.39 -0.02 3.25 16 39 H 0.01 0.50 7.39 -2.38 -0.02 0.48 16 40 H 0.01 0.83 7.50 -2.38 -0.02 0.82 16 41 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.02 0.91 7.83 -2.39 -0.02 0.89 16 43 H 0.02 1.12 6.10 -2.39 -0.01 1.10 16 44 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.14 4.38 4.12 -5.49 -0.02 4.36 16 46 H 0.26 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -78.82 367.19 2.07 -76.74 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.99 Total: 13.98 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: 7.46 Total: 28.30 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -6.86 Total: -129.37 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -1.54 Total: -38.90 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -78.82 2.07 -76.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071159586.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.180 kcal (2) G-P(sol) polarization free energy of solvation -78.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds