Wall clock time and date at job start Tue Mar 31 2020 19:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29930 * 125.37635 * 2 1 4 4 C 1.36077 * 108.47585 * 179.97438 * 3 2 1 5 5 C 1.47419 * 126.44996 * 179.97438 * 4 3 2 6 6 O 1.21606 * 119.99801 * 173.32128 * 5 4 3 7 7 N 1.34771 * 119.99948 * 353.32427 * 5 4 3 8 8 C 1.47162 * 121.07464 * 173.40659 * 7 5 4 9 9 C 1.53281 * 108.55216 * 128.78647 * 8 7 5 10 10 H 1.09000 * 109.51145 * 293.09378 * 9 8 7 11 11 C 1.52997 * 109.51264 * 172.94755 * 9 8 7 12 12 O 1.43121 * 109.23336 * 53.01619 * 9 8 7 13 13 C 1.41870 * 114.38928 * 299.11685 * 12 9 8 14 14 C 1.54362 * 110.74082 * 183.24135 * 13 12 9 15 15 C 1.54454 * 102.87097 * 83.67914 * 14 13 12 16 16 N 1.47086 * 107.29372 * 21.48999 * 15 14 13 17 17 C 1.36934 * 125.62480 * 181.00748 * 16 15 14 18 18 H 1.08004 * 120.00349 * 179.97438 * 17 16 15 19 19 C 1.38819 * 120.00377 * 359.97438 * 17 16 15 20 20 N 1.31618 * 119.99584 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00410 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47062 * 89.99484 * 21 19 17 23 23 H 1.48490 * 109.47333 * 210.00115 * 21 19 17 24 24 H 1.48504 * 109.46873 * 330.00074 * 21 19 17 25 25 C 1.47569 * 108.74929 * 1.00413 * 16 15 14 26 26 C 1.47325 * 121.07665 * 353.43203 * 7 5 4 27 27 C 1.36091 * 107.10068 * 0.25537 * 4 3 2 28 28 O 1.34044 * 125.37568 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47034 * 90.00033 * 1 2 3 30 30 H 1.08999 * 109.47188 * 210.00264 * 1 2 3 31 31 H 1.09000 * 109.46759 * 330.00342 * 1 2 3 32 32 H 1.08998 * 109.63142 * 248.50281 * 8 7 5 33 33 H 1.09000 * 109.62411 * 9.07489 * 8 7 5 34 34 H 1.08996 * 109.47343 * 60.00123 * 11 9 8 35 35 H 1.09003 * 109.47244 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.47074 * 299.99674 * 11 9 8 37 37 H 1.09008 * 110.73161 * 202.02512 * 14 13 12 38 38 H 1.09000 * 110.72989 * 325.33051 * 14 13 12 39 39 H 1.08998 * 109.87869 * 262.06593 * 15 14 13 40 40 H 1.09002 * 110.00461 * 140.97871 * 15 14 13 41 41 H 0.97000 * 119.99955 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.37706 * 217.85702 * 25 16 15 43 43 H 1.08999 * 110.47307 * 95.54585 * 25 16 15 44 44 H 1.09003 * 109.67485 * 348.86236 * 26 7 5 45 45 H 1.09004 * 109.67833 * 109.35919 * 26 7 5 46 46 H 1.07996 * 126.52514 * 179.73916 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5613 0.6638 0.0006 5 6 4.7440 1.5438 0.0003 6 8 5.8562 1.0676 0.1233 7 7 4.5927 2.8760 -0.1364 8 6 5.7385 3.7889 0.0033 9 6 5.7790 4.7114 -1.2201 10 1 6.0118 4.1262 -2.1098 11 6 6.8520 5.7829 -1.0169 12 8 4.5022 5.3379 -1.3808 13 6 3.4294 4.4347 -1.5954 14 6 2.1108 5.1998 -1.8374 15 6 2.1770 5.5314 -3.3444 16 7 3.1161 4.5815 -3.9603 17 6 3.4688 4.5528 -5.2831 18 1 4.1703 3.8127 -5.6390 19 6 2.9249 5.4749 -6.1667 20 7 2.0705 6.3772 -5.7329 21 14 3.4056 5.4353 -7.9714 22 1 2.4736 4.5479 -8.7124 23 1 3.3339 6.8080 -8.5330 24 1 4.7914 4.9182 -8.1032 25 6 3.6155 3.6646 -2.9174 26 6 3.2748 3.4655 -0.4299 27 6 3.5660 -0.6971 -0.0049 28 8 2.2831 -1.0930 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 5.6229 4.3857 0.9080 33 1 6.6617 3.2120 0.0574 34 1 7.8234 5.3050 -0.8904 35 1 6.8800 6.4388 -1.8871 36 1 6.6168 6.3687 -0.1283 37 1 1.2512 4.5660 -1.6190 38 1 2.0796 6.1126 -1.2424 39 1 2.5362 6.5510 -3.4842 40 1 1.1902 5.4212 -3.7942 41 1 1.6901 7.0213 -6.3504 42 1 4.6696 3.4414 -3.0814 43 1 3.0306 2.7449 -2.9065 44 1 2.5718 2.6772 -0.6990 45 1 2.9085 4.0003 0.4465 46 1 4.4361 -1.3368 -0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071159587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:04 Heat of formation + Delta-G solvation = -4.101386 kcal Electronic energy + Delta-G solvation = -30864.451246 eV Core-core repulsion = 26757.819663 eV Total energy + Delta-G solvation = -4106.631584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.64668 -40.42592 -38.67296 -36.17318 -35.35077 -34.39945 -33.06416 -32.41389 -31.27123 -29.34496 -28.23061 -28.11031 -26.88506 -25.65313 -23.87923 -23.42323 -22.01691 -21.47205 -20.17393 -19.90372 -18.95598 -17.73372 -17.15084 -16.92994 -16.74371 -16.48355 -15.79215 -15.20937 -14.86482 -14.62585 -14.38008 -14.14424 -13.94459 -13.85360 -13.44614 -13.39995 -13.33609 -12.98997 -12.78554 -12.46439 -12.16678 -12.13036 -11.95968 -11.71029 -11.49247 -11.39202 -11.00580 -10.84815 -10.79945 -10.65736 -10.40919 -10.18884 -10.17188 -10.05596 -9.64139 -9.60417 -9.46887 -9.18344 -8.54106 -8.26759 -6.76357 -5.66172 -2.98598 0.93891 1.80467 2.36407 2.84275 3.19882 3.42459 3.47486 3.49550 3.63454 4.01165 4.41112 4.52874 4.58240 4.86169 5.01980 5.10937 5.13387 5.18312 5.23308 5.24269 5.36653 5.39830 5.46637 5.53446 5.59438 5.61008 5.70161 5.75999 5.78461 5.83059 5.95353 6.15896 6.18774 6.26083 6.33643 6.47641 6.54025 6.56255 6.64606 6.70348 7.21341 7.40005 7.59050 7.69225 7.80490 7.88938 8.04137 8.31098 9.27158 9.86896 10.53500 11.45645 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.004288 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.336712 B = 6528.477740 C = 7760.343778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.200 3.800 3 N -0.457 5.457 4 C -0.064 4.064 5 C 0.604 3.396 6 O -0.544 6.544 7 N -0.593 5.593 8 C 0.084 3.916 9 C 0.072 3.928 10 H 0.067 0.933 11 C -0.139 4.139 12 O -0.349 6.349 13 C 0.091 3.909 14 C -0.128 4.128 15 C 0.183 3.817 16 N -0.598 5.598 17 C -0.225 4.225 18 H 0.074 0.926 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.122 3.878 26 C 0.074 3.926 27 C 0.011 3.989 28 O -0.197 6.197 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.251 0.749 42 H 0.037 0.963 43 H 0.020 0.980 44 H 0.139 0.861 45 H 0.070 0.930 46 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 -10.832 15.903 19.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.008 4.008 3 N -0.188 5.188 4 C -0.183 4.183 5 C 0.392 3.608 6 O -0.423 6.423 7 N -0.324 5.324 8 C -0.039 4.039 9 C 0.013 3.987 10 H 0.085 0.915 11 C -0.197 4.197 12 O -0.268 6.268 13 C 0.050 3.950 14 C -0.166 4.166 15 C 0.058 3.942 16 N -0.324 5.324 17 C -0.354 4.354 18 H 0.092 0.908 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.208 1.208 25 C -0.005 4.005 26 C -0.049 4.049 27 C -0.063 4.063 28 O -0.083 6.083 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.037 0.963 44 H 0.156 0.844 45 H 0.088 0.912 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.359 -10.142 15.776 18.758 hybrid contribution 0.614 -0.855 -1.029 1.472 sum 0.256 -10.997 14.747 18.398 Atomic orbital electron populations 1.20370 0.80752 1.05354 1.05349 1.26529 0.96776 0.78367 0.99176 1.70720 1.00805 1.28870 1.18436 1.21707 0.92030 0.92944 1.11660 1.16768 0.86156 0.81376 0.76547 1.90788 1.24639 1.74821 1.52020 1.47957 1.10670 1.05083 1.68655 1.22446 0.90069 0.92104 0.99256 1.22427 0.85648 0.94341 0.96255 0.91474 1.21668 0.96304 0.98467 1.03217 1.87823 1.14368 1.32458 1.92147 1.22362 0.88924 0.90293 0.93428 1.22813 0.93117 0.99561 1.01138 1.21154 0.94020 0.94036 0.84972 1.44407 1.50297 1.33868 1.03805 1.19018 1.21358 1.12704 0.82290 0.90781 1.24763 0.99492 0.97977 0.98081 1.69961 1.33387 1.20240 1.33255 0.86140 0.77934 0.76825 0.85007 1.21681 1.21643 1.20791 1.21897 0.97339 0.92876 0.88344 1.23074 0.84439 0.99247 0.98097 1.25214 0.84833 0.95507 1.00739 1.84386 1.16688 1.37914 1.69306 0.88310 0.89177 0.87689 0.90651 0.88357 0.91251 0.91056 0.91918 0.90874 0.90961 0.93247 0.93840 0.93811 0.94459 0.96255 0.84355 0.91215 0.75356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.01 0.38 0.01 16 2 C 0.20 2.10 8.30 -13.08 -0.11 1.99 16 3 N -0.46 -6.07 7.88 -7.65 -0.06 -6.13 16 4 C -0.06 -0.90 6.67 -83.02 -0.55 -1.45 16 5 C 0.60 9.70 7.69 -12.52 -0.10 9.60 16 6 O -0.54 -9.52 16.37 5.27 0.09 -9.43 16 7 N -0.59 -9.40 2.96 -173.97 -0.51 -9.91 16 8 C 0.08 1.22 5.92 -3.54 -0.02 1.20 16 9 C 0.07 1.17 3.20 -26.59 -0.09 1.09 16 10 H 0.07 1.24 6.26 -51.93 -0.32 0.91 16 11 C -0.14 -1.84 9.57 37.16 0.36 -1.49 16 12 O -0.35 -6.77 9.92 -35.22 -0.35 -7.12 16 13 C 0.09 1.73 0.83 -89.64 -0.07 1.66 16 14 C -0.13 -2.46 6.12 -25.26 -0.15 -2.62 16 15 C 0.18 4.56 5.39 -2.96 -0.02 4.55 16 16 N -0.60 -15.84 3.40 -170.31 -0.58 -16.42 16 17 C -0.23 -6.49 10.28 -15.06 -0.15 -6.65 16 18 H 0.07 2.09 7.83 -52.48 -0.41 1.68 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -27.46 10.30 55.49 0.57 -26.89 16 21 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.12 2.72 6.19 -2.87 -0.02 2.70 16 26 C 0.07 1.19 4.88 -3.91 -0.02 1.17 16 27 C 0.01 0.12 11.95 29.96 0.36 0.48 16 28 O -0.20 -2.08 10.73 6.50 0.07 -2.01 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 1.39 7.06 -51.93 -0.37 1.02 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.25 8.00 -51.92 -0.42 0.83 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.05 1.38 7.38 -51.93 -0.38 1.00 16 40 H 0.04 1.17 7.49 -51.93 -0.39 0.78 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.04 0.86 6.10 -51.93 -0.32 0.54 16 43 H 0.02 0.44 7.81 -51.93 -0.41 0.04 16 44 H 0.14 2.23 4.14 -52.87 -0.22 2.01 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.23 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -35.04 367.14 -7.17 -42.21 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.59 Total: 0.66 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -0.30 Total: 11.94 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.58 Total: -59.34 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.19 Total: -18.56 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.04 -7.17 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071159587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.105 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds