Wall clock time and date at job start Tue Mar 31 2020 18:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35324 * 128.03744 * 2 1 4 4 O 1.34010 * 106.66503 * 180.23917 * 3 2 1 5 5 N 1.20901 * 111.85320 * 359.74424 * 4 3 2 6 6 C 1.30992 * 111.43745 * 0.02562 * 5 4 3 7 7 C 1.48326 * 126.94006 * 179.97438 * 6 5 4 8 8 O 1.21491 * 119.99908 * 186.19787 * 7 6 5 9 9 N 1.34773 * 120.00290 * 6.18659 * 7 6 5 10 10 C 1.47154 * 121.05721 * 175.84378 * 9 7 6 11 11 C 1.53288 * 108.51240 * 230.87143 * 10 9 7 12 12 H 1.09002 * 109.51015 * 67.02512 * 11 10 9 13 13 C 1.53001 * 109.51204 * 187.11908 * 11 10 9 14 14 O 1.43095 * 109.23588 * 307.09506 * 11 10 9 15 15 C 1.42071 * 114.31529 * 61.19023 * 14 11 10 16 16 C 1.54509 * 110.32813 * 61.90641 * 15 14 11 17 17 C 1.55019 * 101.50322 * 83.97416 * 16 15 14 18 18 N 1.47488 * 104.91354 * 36.34867 * 17 16 15 19 19 C 1.36933 * 125.65343 * 156.00338 * 18 17 16 20 20 H 1.08000 * 119.99555 * 180.02562 * 19 18 17 21 21 C 1.38818 * 120.00312 * 0.02562 * 19 18 17 22 22 N 1.31617 * 119.99661 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99954 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46802 * 60.00453 * 23 21 19 25 25 H 1.48494 * 109.46851 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47146 * 300.00475 * 23 21 19 27 27 C 1.47177 * 108.68594 * 335.97798 * 18 17 16 28 28 C 1.47314 * 121.04899 * 355.56813 * 9 7 6 29 29 H 1.09003 * 109.46985 * 270.16231 * 1 2 3 30 30 H 1.08999 * 109.47493 * 30.16662 * 1 2 3 31 31 H 1.08999 * 109.46762 * 150.16732 * 1 2 3 32 32 H 1.08002 * 126.66443 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.62726 * 350.58082 * 10 9 7 34 34 H 1.08995 * 109.63322 * 110.96628 * 10 9 7 35 35 H 1.09004 * 109.47113 * 59.99546 * 13 11 10 36 36 H 1.08998 * 109.47278 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.46844 * 300.00230 * 13 11 10 38 38 H 1.09008 * 111.01638 * 202.02805 * 16 15 14 39 39 H 1.09000 * 111.02337 * 325.91658 * 16 15 14 40 40 H 1.08996 * 110.35144 * 155.21188 * 17 16 15 41 41 H 1.09000 * 110.34852 * 277.37980 * 17 16 15 42 42 H 0.97004 * 119.99445 * 179.97438 * 22 21 19 43 43 H 1.08999 * 109.91593 * 242.16350 * 27 18 17 44 44 H 1.09002 * 109.91140 * 120.88516 * 27 18 17 45 45 H 1.08999 * 109.67996 * 250.56331 * 28 9 7 46 46 H 1.08998 * 109.67952 * 11.11974 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5775 -0.0054 5 7 3.5989 -0.6315 -0.0035 6 6 2.3837 -1.1205 0.0027 7 6 1.9993 -2.5531 0.0062 8 8 0.8311 -2.8688 -0.1017 9 7 2.9459 -3.5046 0.1287 10 6 2.5838 -4.9275 0.2259 11 6 3.2978 -5.5294 1.4415 12 1 2.8949 -5.0908 2.3544 13 6 3.0810 -7.0438 1.4635 14 8 4.6979 -5.2474 1.3533 15 6 5.0168 -3.8630 1.3517 16 6 4.5579 -3.2049 2.6722 17 6 5.7528 -3.5223 3.6074 18 7 6.9457 -3.4244 2.7456 19 6 8.2204 -3.1654 3.1735 20 1 9.0294 -3.1134 2.4599 21 6 8.4728 -2.9697 4.5244 22 7 7.4869 -3.0336 5.3940 23 14 10.2117 -2.6156 5.1080 24 1 10.7050 -1.3704 4.4668 25 1 10.2140 -2.4477 6.5834 26 1 11.0983 -3.7479 4.7377 27 6 6.5388 -3.6519 1.3496 28 6 4.3761 -3.1534 0.1634 29 1 -0.3633 0.0029 1.0277 30 1 -0.3634 0.8885 -0.5164 31 1 -0.3633 -0.8915 -0.5112 32 1 2.0559 2.1076 0.0004 33 1 1.5052 -5.0232 0.3503 34 1 2.8955 -5.4475 -0.6799 35 1 3.4856 -7.4821 0.5511 36 1 3.5885 -7.4711 2.3283 37 1 2.0139 -7.2572 1.5268 38 1 4.4322 -2.1290 2.5497 39 1 3.6406 -3.6646 3.0400 40 1 5.8071 -2.7916 4.4143 41 1 5.6586 -4.5291 4.0143 42 1 7.6634 -2.8971 6.3381 43 1 7.0361 -4.5392 0.9578 44 1 6.7923 -2.7827 0.7427 45 1 4.8562 -3.4773 -0.7600 46 1 4.4867 -2.0750 0.2765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071227522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:04 Heat of formation + Delta-G solvation = 17.039158 kcal Electronic energy + Delta-G solvation = -30920.089984 eV Core-core repulsion = 26814.375124 eV Total energy + Delta-G solvation = -4105.714861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.17755 -41.95011 -40.19753 -37.97089 -36.21179 -35.74773 -34.80804 -33.51214 -32.89499 -31.11640 -30.09219 -29.19957 -28.12794 -27.45199 -25.72935 -24.86666 -23.26516 -22.75354 -22.00622 -21.32925 -20.55611 -19.05404 -18.95444 -18.85298 -18.09028 -17.74804 -17.19168 -16.90090 -16.53818 -16.11436 -15.81548 -15.69230 -15.13511 -14.98954 -14.69535 -14.52037 -14.29219 -14.12989 -14.06883 -13.96321 -13.65557 -13.49088 -13.21447 -12.98925 -12.87852 -12.81681 -12.74164 -12.42235 -12.31318 -12.15561 -12.02254 -11.90396 -11.69311 -11.55861 -11.40725 -11.19358 -11.02202 -10.75835 -10.40238 -9.72846 -8.94646 -7.78874 -5.24363 -0.00242 0.70449 1.45877 1.47446 1.51041 1.57235 1.90114 2.19854 2.44726 2.56190 2.71495 3.29616 3.33377 3.40149 3.55831 3.67503 3.72092 3.78350 3.92270 3.96593 4.04862 4.13831 4.29161 4.32567 4.38990 4.43728 4.60009 4.64013 4.69520 4.73440 4.78731 4.79344 4.83675 4.88628 4.94924 4.99982 5.03641 5.13103 5.25989 5.33535 5.42013 5.50664 5.70564 5.93840 6.22695 6.25052 6.64487 7.06496 7.06818 7.72606 8.37769 9.23826 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012024 B = 0.004191 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.078709 B = 6680.112010 C = 8336.837692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.170 4.170 3 C -0.033 4.033 4 O 0.121 5.879 5 N -0.348 5.348 6 C -0.054 4.054 7 C 0.598 3.402 8 O -0.544 6.544 9 N -0.598 5.598 10 C 0.088 3.912 11 C 0.065 3.935 12 H 0.052 0.948 13 C -0.134 4.134 14 O -0.373 6.373 15 C 0.110 3.890 16 C -0.146 4.146 17 C 0.170 3.830 18 N -0.620 5.620 19 C -0.241 4.241 20 H 0.086 0.914 21 C -0.066 4.066 22 N -0.952 5.952 23 Si 0.985 3.015 24 H -0.273 1.273 25 H -0.293 1.293 26 H -0.279 1.279 27 C 0.150 3.850 28 C 0.075 3.925 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.277 0.723 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.074 0.926 41 H -0.018 1.018 42 H 0.247 0.753 43 H 0.033 0.967 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.621 5.489 -13.524 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.176 4.176 3 C -0.113 4.113 4 O 0.048 5.952 5 N -0.051 5.051 6 C -0.211 4.211 7 C 0.386 3.614 8 O -0.421 6.421 9 N -0.330 5.330 10 C -0.033 4.033 11 C 0.007 3.993 12 H 0.070 0.930 13 C -0.191 4.191 14 O -0.293 6.293 15 C 0.070 3.930 16 C -0.185 4.185 17 C 0.045 3.955 18 N -0.347 5.347 19 C -0.370 4.370 20 H 0.103 0.897 21 C -0.258 4.258 22 N -0.601 5.601 23 Si 0.812 3.188 24 H -0.198 1.198 25 H -0.219 1.219 26 H -0.205 1.205 27 C 0.024 3.976 28 C -0.048 4.048 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.292 0.708 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.000 1.000 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.071 0.929 45 H 0.105 0.895 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.799 4.575 -13.435 20.504 hybrid contribution 0.188 0.118 0.821 0.850 sum -14.611 4.693 -12.614 19.864 Atomic orbital electron populations 1.20241 0.85282 1.04411 1.03478 1.21691 1.00104 0.89585 1.06208 1.26733 0.80370 1.02833 1.01349 1.84782 1.31195 1.14695 1.64553 1.73901 1.21390 0.92554 1.17237 1.23494 0.90695 0.96820 1.10089 1.17166 0.84775 0.83122 0.76377 1.90716 1.17898 1.81934 1.51518 1.48087 1.06737 1.07311 1.70835 1.22521 1.02233 0.78928 0.99662 1.22717 0.81380 0.98664 0.96567 0.93029 1.21706 1.03644 0.90241 1.03529 1.87879 1.24392 1.22816 1.94205 1.21999 0.95239 0.81952 0.93856 1.23250 0.98611 0.99735 0.96893 1.21546 0.83462 0.97312 0.93206 1.44746 1.04634 1.83441 1.01845 1.19466 0.84732 1.40448 0.92334 0.89651 1.25678 1.01906 1.02422 0.95818 1.70057 1.31240 1.57479 1.01330 0.85060 0.78782 0.78364 0.76558 1.19837 1.21941 1.20480 1.21194 0.90464 0.98476 0.87424 1.22986 0.79190 1.04309 0.98344 0.90432 0.87615 0.91645 0.70791 0.87291 0.88735 0.90671 0.92285 0.88173 0.91869 0.91302 0.90826 1.00028 0.94308 0.94945 0.92851 0.89483 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.06 71.24 0.72 -0.48 16 2 C -0.17 -3.39 6.34 -19.53 -0.12 -3.52 16 3 C -0.03 -0.45 12.24 67.15 0.82 0.37 16 4 O 0.12 2.64 11.18 71.94 0.80 3.45 16 5 N -0.35 -9.68 8.54 -49.51 -0.42 -10.11 16 6 C -0.05 -1.49 6.95 42.96 0.30 -1.19 16 7 C 0.60 18.31 7.74 86.93 0.67 18.99 16 8 O -0.54 -17.66 14.80 -3.69 -0.05 -17.72 16 9 N -0.60 -17.84 2.91 -821.33 -2.39 -20.23 16 10 C 0.09 2.28 5.90 86.35 0.51 2.79 16 11 C 0.06 1.88 3.17 30.69 0.10 1.97 16 12 H 0.05 1.64 6.13 -2.39 -0.01 1.63 16 13 C -0.13 -2.97 9.57 71.98 0.69 -2.28 16 14 O -0.37 -13.89 9.87 -148.98 -1.47 -15.36 16 15 C 0.11 4.21 0.83 -10.22 -0.01 4.20 16 16 C -0.15 -6.16 5.91 31.80 0.19 -5.97 16 17 C 0.17 9.04 5.88 86.88 0.51 9.55 16 18 N -0.62 -33.65 3.40 -692.52 -2.36 -36.01 16 19 C -0.24 -13.91 10.28 84.04 0.86 -13.04 16 20 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 21 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 22 N -0.95 -58.20 10.09 21.65 0.22 -57.98 16 23 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 27 C 0.15 6.63 6.62 86.47 0.57 7.20 16 28 C 0.07 2.39 5.02 86.06 0.43 2.83 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.32 6.80 -2.39 -0.02 1.30 16 32 H 0.28 0.44 8.06 -2.91 -0.02 0.42 16 33 H 0.11 2.64 7.11 -2.39 -0.02 2.62 16 34 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 2.67 7.86 -2.38 -0.02 2.65 16 39 H 0.07 2.75 5.98 -2.39 -0.01 2.73 16 40 H 0.07 4.39 5.88 -2.39 -0.01 4.37 16 41 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 42 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.03 1.46 8.06 -2.39 -0.02 1.44 16 44 H 0.05 2.22 7.79 -2.39 -0.02 2.20 16 45 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.14 4.44 3.75 -30.44 -0.11 4.32 16 Total: -1.00 -75.82 362.36 3.96 -71.85 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.90 Total: 15.74 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 6.71 Total: 18.07 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -4.95 Total: -124.33 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.72 Total: -29.63 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -75.82 3.96 -71.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071227522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.894 kcal (2) G-P(sol) polarization free energy of solvation -75.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds