Wall clock time and date at job start Tue Mar 31 2020 18:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35317 * 128.03579 * 2 1 4 4 O 1.34021 * 106.66556 * 180.22863 * 3 2 1 5 5 N 1.20912 * 111.84369 * 359.76276 * 4 3 2 6 6 C 1.30979 * 111.44071 * 359.97438 * 5 4 3 7 7 C 1.48333 * 126.93932 * 179.97438 * 6 5 4 8 8 O 1.21487 * 120.00312 * 174.16884 * 7 6 5 9 9 N 1.34776 * 119.99756 * 354.17007 * 7 6 5 10 10 C 1.47172 * 121.08140 * 173.60229 * 9 7 6 11 11 C 1.53279 * 108.55718 * 128.76667 * 10 9 7 12 12 H 1.08998 * 109.51594 * 293.05742 * 11 10 9 13 13 C 1.52999 * 109.51310 * 172.95348 * 11 10 9 14 14 O 1.43125 * 109.22171 * 53.02859 * 11 10 9 15 15 C 1.41883 * 114.39103 * 299.11566 * 14 11 10 16 16 C 1.54374 * 110.72193 * 296.61571 * 15 14 11 17 17 C 1.54478 * 102.95351 * 276.11725 * 16 15 14 18 18 N 1.47079 * 107.28852 * 338.86061 * 17 16 15 19 19 C 1.36942 * 125.62547 * 178.89099 * 18 17 16 20 20 H 1.08006 * 119.99665 * 179.69546 * 19 18 17 21 21 C 1.38814 * 120.00003 * 359.69486 * 19 18 17 22 22 N 1.31618 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99908 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47041 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.47056 * 299.99911 * 23 21 19 26 26 H 1.48497 * 109.47182 * 59.99585 * 23 21 19 27 27 C 1.47567 * 108.74211 * 358.62814 * 18 17 16 28 28 C 1.47337 * 121.08086 * 353.62449 * 9 7 6 29 29 H 1.09005 * 109.47120 * 270.14866 * 1 2 3 30 30 H 1.09001 * 109.47371 * 30.15060 * 1 2 3 31 31 H 1.08993 * 109.47113 * 150.15335 * 1 2 3 32 32 H 1.08001 * 126.66813 * 0.02562 * 3 2 1 33 33 H 1.08988 * 109.62262 * 248.49105 * 10 9 7 34 34 H 1.08997 * 109.61661 * 9.05118 * 10 9 7 35 35 H 1.09003 * 109.47278 * 59.99885 * 13 11 10 36 36 H 1.08997 * 109.47032 * 180.02562 * 13 11 10 37 37 H 1.09007 * 109.46577 * 300.00049 * 13 11 10 38 38 H 1.08995 * 110.73588 * 34.67696 * 16 15 14 39 39 H 1.08997 * 110.72877 * 157.80248 * 16 15 14 40 40 H 1.09003 * 109.98843 * 219.37493 * 17 16 15 41 41 H 1.08997 * 109.76327 * 98.22534 * 17 16 15 42 42 H 0.96999 * 119.99756 * 180.02562 * 22 21 19 43 43 H 1.09003 * 110.37654 * 142.38633 * 27 18 17 44 44 H 1.08996 * 110.37843 * 264.62111 * 27 18 17 45 45 H 1.09003 * 109.67129 * 109.40378 * 28 9 7 46 46 H 1.08998 * 109.69888 * 348.89021 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5889 0.5774 -0.0051 5 7 3.5989 -0.6316 -0.0035 6 6 2.3837 -1.1205 0.0034 7 6 1.9992 -2.5531 0.0068 8 8 0.8314 -2.8684 0.1202 9 7 2.9454 -3.5050 -0.1158 10 6 2.6107 -4.9314 0.0239 11 6 3.1650 -5.6837 -1.1911 12 1 2.6296 -5.3719 -2.0878 13 6 2.9848 -7.1891 -0.9858 14 8 4.5571 -5.3842 -1.3359 15 6 4.8416 -4.0109 -1.5508 16 6 4.2253 -3.5270 -2.8809 17 6 5.2871 -3.9389 -3.9246 18 7 6.5607 -4.1091 -3.2088 19 6 7.7479 -4.4928 -3.7733 20 1 8.6324 -4.5847 -3.1604 21 6 7.8144 -4.7636 -5.1331 22 7 6.7363 -4.6521 -5.8798 23 14 9.4337 -5.2877 -5.9029 24 1 9.2394 -5.5158 -7.3573 25 1 10.4466 -4.2209 -5.6996 26 1 9.9022 -6.5434 -5.2636 27 6 6.3493 -3.7920 -1.7832 28 6 4.3485 -3.1515 -0.3935 29 1 -0.3633 0.0027 1.0277 30 1 -0.3634 0.8886 -0.5162 31 1 -0.3633 -0.8913 -0.5114 32 1 2.0559 2.1075 0.0004 33 1 3.0607 -5.3254 0.9350 34 1 1.5281 -5.0508 0.0657 35 1 1.9248 -7.4159 -0.8710 36 1 3.3796 -7.7235 -1.8499 37 1 3.5221 -7.5005 -0.0899 38 1 3.2772 -4.0295 -3.0723 39 1 4.0925 -2.4452 -2.8735 40 1 5.3881 -3.1602 -4.6807 41 1 4.9972 -4.8788 -4.3941 42 1 6.7827 -4.8417 -6.8300 43 1 6.9319 -4.4652 -1.1542 44 1 6.6196 -2.7557 -1.5807 45 1 4.9569 -3.3424 0.4906 46 1 4.4152 -2.0979 -0.6644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071227524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:11 Heat of formation + Delta-G solvation = 13.329562 kcal Electronic energy + Delta-G solvation = -30815.206632 eV Core-core repulsion = 26709.330911 eV Total energy + Delta-G solvation = -4105.875721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.16550 -41.92670 -40.18567 -37.95948 -36.19298 -35.73791 -34.79411 -33.49350 -32.89034 -31.15824 -30.09622 -29.20125 -28.12606 -27.42425 -25.72798 -24.86067 -23.18869 -22.72312 -22.07409 -21.34206 -20.52421 -19.03567 -18.95330 -18.83471 -18.06835 -17.71410 -17.16801 -16.81988 -16.59956 -16.08533 -15.74896 -15.64390 -15.26969 -15.07252 -14.69240 -14.45232 -14.27842 -14.08587 -14.04594 -13.92016 -13.70820 -13.45207 -13.21548 -13.05937 -12.87803 -12.84179 -12.74699 -12.41618 -12.24393 -12.11861 -12.04823 -11.89752 -11.79929 -11.64528 -11.41105 -11.18055 -11.01895 -10.71395 -10.38478 -9.71884 -8.93496 -7.85452 -5.21650 0.00449 0.71108 1.45004 1.47410 1.49837 1.55745 1.90160 2.22799 2.48272 2.54432 2.71946 3.30255 3.35419 3.38886 3.54942 3.70060 3.76514 3.80350 3.90532 3.95892 4.05996 4.13589 4.28037 4.30571 4.37674 4.44686 4.60375 4.62151 4.69008 4.71786 4.77504 4.79071 4.83454 4.87754 4.94297 4.99286 5.01309 5.10204 5.25617 5.32843 5.40865 5.53012 5.66835 5.95320 6.15022 6.29274 6.65346 7.06159 7.06956 7.73409 8.38489 9.25420 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.003762 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.489325 B = 7441.329690 C = 8671.994174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.172 4.172 3 C -0.032 4.032 4 O 0.126 5.874 5 N -0.347 5.347 6 C -0.056 4.056 7 C 0.598 3.402 8 O -0.545 6.545 9 N -0.599 5.599 10 C 0.089 3.911 11 C 0.065 3.935 12 H 0.048 0.952 13 C -0.134 4.134 14 O -0.369 6.369 15 C 0.106 3.894 16 C -0.149 4.149 17 C 0.201 3.799 18 N -0.619 5.619 19 C -0.242 4.242 20 H 0.086 0.914 21 C -0.067 4.067 22 N -0.954 5.954 23 Si 0.982 3.018 24 H -0.295 1.295 25 H -0.273 1.273 26 H -0.277 1.277 27 C 0.149 3.851 28 C 0.090 3.910 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.277 0.723 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.008 0.992 41 H 0.007 0.993 42 H 0.246 0.754 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.359 10.013 15.944 23.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.177 4.177 3 C -0.112 4.112 4 O 0.051 5.949 5 N -0.048 5.048 6 C -0.213 4.213 7 C 0.385 3.615 8 O -0.422 6.422 9 N -0.332 5.332 10 C -0.032 4.032 11 C 0.007 3.993 12 H 0.066 0.934 13 C -0.191 4.191 14 O -0.288 6.288 15 C 0.064 3.936 16 C -0.188 4.188 17 C 0.075 3.925 18 N -0.346 5.346 19 C -0.371 4.371 20 H 0.104 0.896 21 C -0.259 4.259 22 N -0.603 5.603 23 Si 0.810 3.190 24 H -0.221 1.221 25 H -0.199 1.199 26 H -0.203 1.203 27 C 0.023 3.977 28 C -0.034 4.034 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.292 0.708 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.108 0.892 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.563 8.997 15.826 22.119 hybrid contribution -0.041 -0.233 -1.063 1.089 sum -12.605 8.764 14.762 21.299 Atomic orbital electron populations 1.20207 0.85462 1.03962 1.03622 1.21690 1.00063 0.89750 1.06245 1.26709 0.80374 1.02758 1.01396 1.84778 1.31030 1.14602 1.64531 1.74103 1.21382 0.92547 1.16782 1.23442 0.90792 0.96673 1.10360 1.17185 0.84702 0.83224 0.76367 1.90723 1.17826 1.81997 1.51655 1.48092 1.08841 1.07020 1.69201 1.22504 1.03185 0.78308 0.99244 1.22677 0.82352 0.97862 0.96400 0.93369 1.21693 1.03735 0.90568 1.03124 1.87881 1.24655 1.23968 1.92284 1.22166 0.96379 0.82276 0.92739 1.23158 0.98613 1.00415 0.96600 1.20723 0.83766 0.96701 0.91262 1.44673 1.06522 1.79925 1.03440 1.19461 0.87381 1.38129 0.92118 0.89598 1.25686 1.00971 1.02448 0.96814 1.70196 1.28682 1.56240 1.05183 0.85098 0.78792 0.78407 0.76706 1.22108 1.19914 1.20343 1.21507 0.91462 0.98608 0.86113 1.22666 0.80608 1.01925 0.98166 0.89894 0.87907 0.92324 0.70771 0.88613 0.87339 0.88202 0.92685 0.90647 0.91535 0.91256 0.97406 0.97493 0.94478 0.92895 0.92914 0.89230 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 9.97 71.24 0.71 -0.42 16 2 C -0.17 -3.22 6.34 -19.54 -0.12 -3.34 16 3 C -0.03 -0.39 12.24 67.15 0.82 0.44 16 4 O 0.13 2.40 11.18 71.82 0.80 3.21 16 5 N -0.35 -8.78 8.69 -49.51 -0.43 -9.21 16 6 C -0.06 -1.46 6.88 42.96 0.30 -1.17 16 7 C 0.60 17.92 7.73 86.93 0.67 18.60 16 8 O -0.54 -17.70 14.90 -3.67 -0.05 -17.76 16 9 N -0.60 -17.55 2.95 -821.54 -2.42 -19.97 16 10 C 0.09 2.33 5.92 86.34 0.51 2.84 16 11 C 0.07 1.96 3.20 30.69 0.10 2.06 16 12 H 0.05 1.61 6.24 -2.39 -0.01 1.59 16 13 C -0.13 -3.19 9.57 71.98 0.69 -2.51 16 14 O -0.37 -14.08 9.93 -148.95 -1.48 -15.56 16 15 C 0.11 3.97 0.84 -10.17 -0.01 3.96 16 16 C -0.15 -6.18 5.87 31.56 0.19 -6.00 16 17 C 0.20 10.68 5.39 86.77 0.47 11.15 16 18 N -0.62 -33.46 3.40 -692.74 -2.36 -35.81 16 19 C -0.24 -14.05 10.28 84.03 0.86 -13.19 16 20 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 21 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 22 N -0.95 -59.47 10.31 21.65 0.22 -59.25 16 23 Si 0.98 46.91 29.55 68.60 2.03 48.94 16 24 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 27 C 0.15 6.38 6.41 86.55 0.56 6.94 16 28 C 0.09 2.74 4.91 86.01 0.42 3.17 16 29 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 1.21 7.02 -2.39 -0.02 1.19 16 32 H 0.28 -0.04 8.06 -2.91 -0.02 -0.07 16 33 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.11 2.67 7.06 -2.39 -0.02 2.66 16 35 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.63 8.14 -2.38 -0.02 1.62 16 38 H 0.07 2.68 6.08 -2.39 -0.01 2.66 16 39 H 0.07 2.71 7.82 -2.39 -0.02 2.69 16 40 H 0.01 0.46 7.52 -2.39 -0.02 0.44 16 41 H 0.01 0.41 7.37 -2.39 -0.02 0.40 16 42 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 43 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.05 2.11 8.00 -2.39 -0.02 2.09 16 45 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.12 3.83 4.22 -2.81 -0.01 3.82 16 Total: -1.00 -77.59 363.93 3.94 -73.65 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.00 Total: 12.68 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 6.63 Total: 19.08 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -4.99 Total: -124.25 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.73 Total: -30.11 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -77.59 3.94 -73.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071227524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.983 kcal (2) G-P(sol) polarization free energy of solvation -77.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds