Wall clock time and date at job start Tue Mar 31 2020 18:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35316 * 128.03934 * 2 1 4 4 O 1.34016 * 106.66831 * 180.22816 * 3 2 1 5 5 N 1.20900 * 111.84905 * 359.76363 * 4 3 2 6 6 C 1.30990 * 111.43780 * 359.97438 * 5 4 3 7 7 C 1.48333 * 126.93724 * 179.97438 * 6 5 4 8 8 O 1.21495 * 119.99807 * 174.15322 * 7 6 5 9 9 N 1.34773 * 119.99937 * 354.15180 * 7 6 5 10 10 C 1.47178 * 121.05958 * 173.61030 * 9 7 6 11 11 C 1.53281 * 108.49408 * 128.77050 * 10 9 7 12 12 H 1.09008 * 109.51222 * 293.01551 * 11 10 9 13 13 C 1.52993 * 109.51289 * 172.91439 * 11 10 9 14 14 O 1.43087 * 109.22521 * 52.98611 * 11 10 9 15 15 C 1.42061 * 114.40572 * 298.86629 * 14 11 10 16 16 C 1.54514 * 110.33199 * 182.54238 * 15 14 11 17 17 C 1.55017 * 101.53458 * 83.94507 * 16 15 14 18 18 N 1.47478 * 104.90329 * 36.37248 * 17 16 15 19 19 C 1.36940 * 125.66807 * 155.98526 * 18 17 16 20 20 H 1.08004 * 119.99914 * 180.02562 * 19 18 17 21 21 C 1.38804 * 119.99739 * 0.02562 * 19 18 17 22 22 N 1.31618 * 120.00667 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99781 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47317 * 59.99722 * 23 21 19 25 25 H 1.48498 * 109.47232 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47060 * 299.99960 * 23 21 19 27 27 C 1.47191 * 108.66641 * 335.98027 * 18 17 16 28 28 C 1.47288 * 121.06650 * 353.59214 * 9 7 6 29 29 H 1.09003 * 109.46729 * 270.14695 * 1 2 3 30 30 H 1.08996 * 109.46982 * 30.14406 * 1 2 3 31 31 H 1.08996 * 109.46880 * 150.15100 * 1 2 3 32 32 H 1.08000 * 126.66538 * 359.96850 * 3 2 1 33 33 H 1.09006 * 109.63221 * 9.06861 * 10 9 7 34 34 H 1.08995 * 109.79843 * 248.57340 * 10 9 7 35 35 H 1.09005 * 109.47384 * 59.99990 * 13 11 10 36 36 H 1.08997 * 109.47342 * 299.99978 * 13 11 10 37 37 H 1.08999 * 109.47330 * 179.97438 * 13 11 10 38 38 H 1.09004 * 111.01086 * 202.00752 * 16 15 14 39 39 H 1.08997 * 111.01454 * 325.88008 * 16 15 14 40 40 H 1.09010 * 110.35651 * 155.22767 * 17 16 15 41 41 H 1.09003 * 110.35399 * 277.51521 * 17 16 15 42 42 H 0.96996 * 120.00479 * 180.02562 * 22 21 19 43 43 H 1.09006 * 109.90695 * 242.14018 * 27 18 17 44 44 H 1.09004 * 109.90633 * 120.88708 * 27 18 17 45 45 H 1.08998 * 109.63196 * 349.05543 * 28 9 7 46 46 H 1.08995 * 109.63717 * 109.67205 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5774 -0.0051 5 7 3.5989 -0.6316 -0.0035 6 6 2.3837 -1.1205 0.0034 7 6 1.9993 -2.5531 0.0068 8 8 0.8315 -2.8684 0.1204 9 7 2.9454 -3.5050 -0.1162 10 6 2.6103 -4.9313 0.0234 11 6 3.1648 -5.6823 -1.1923 12 1 2.6288 -5.3701 -2.0887 13 6 2.9857 -7.1879 -0.9882 14 8 4.5562 -5.3817 -1.3374 15 6 4.8400 -4.0072 -1.5572 16 6 6.3570 -3.7985 -1.7632 17 6 6.5114 -4.1157 -3.2727 18 7 5.2856 -3.5862 -3.8989 19 6 5.1559 -3.2128 -5.2100 20 1 4.2115 -2.8348 -5.5729 21 6 6.2382 -3.3201 -6.0724 22 7 7.3890 -3.7812 -5.6302 23 14 6.0616 -2.8101 -7.8607 24 1 5.6873 -1.3747 -7.9315 25 1 7.3519 -3.0199 -8.5651 26 1 5.0052 -3.6295 -8.5071 27 6 4.2246 -3.5259 -2.8804 28 6 4.3478 -3.1512 -0.3949 29 1 -0.3633 0.0026 1.0277 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3633 -0.8913 -0.5115 32 1 2.0559 2.1075 -0.0005 33 1 1.5276 -5.0507 0.0651 34 1 3.0578 -5.3283 0.9345 35 1 1.9259 -7.4156 -0.8734 36 1 3.5234 -7.4997 -0.0928 37 1 3.3798 -7.7213 -1.8533 38 1 6.6425 -2.7685 -1.5491 39 1 6.9336 -4.4965 -1.1562 40 1 7.3908 -3.6146 -3.6776 41 1 6.5821 -5.1922 -3.4286 42 1 8.1454 -3.8558 -6.2328 43 1 3.3993 -4.1785 -3.1651 44 1 3.8705 -2.5005 -2.7737 45 1 4.4131 -2.0968 -0.6631 46 1 4.9571 -3.3463 0.4875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071227525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:15 Heat of formation + Delta-G solvation = 36.117697 kcal Electronic energy + Delta-G solvation = -30954.501773 eV Core-core repulsion = 26849.614219 eV Total energy + Delta-G solvation = -4104.887553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.24054 -40.59777 -38.82316 -36.27840 -34.94656 -34.84570 -33.19401 -32.42729 -31.32541 -29.38810 -28.44034 -28.23120 -27.03804 -25.81784 -24.15572 -23.59542 -21.94421 -21.68851 -20.44257 -20.04525 -19.06106 -17.96367 -17.76929 -17.00906 -16.91383 -16.53152 -15.95997 -15.31339 -14.91126 -14.72706 -14.40343 -14.08170 -13.88226 -13.71316 -13.45365 -13.42793 -13.36072 -12.98906 -12.75078 -12.51288 -12.24613 -12.14596 -11.89475 -11.65416 -11.54651 -11.30904 -11.01545 -10.91442 -10.85183 -10.52226 -10.45034 -10.40752 -10.14612 -10.11202 -9.79839 -9.62848 -9.58341 -9.56656 -8.63827 -8.42150 -6.83046 -5.64263 -3.05981 0.99255 1.49939 2.59964 2.97448 3.03249 3.40855 3.44823 3.46368 3.71728 3.88458 4.27314 4.47866 4.60966 4.73163 4.85329 4.97164 5.07074 5.08527 5.15380 5.25923 5.42801 5.45184 5.47219 5.49058 5.51223 5.60887 5.62533 5.66230 5.70451 5.84508 5.95617 6.04696 6.06365 6.16545 6.24870 6.34560 6.43555 6.51729 6.59561 6.66273 7.15602 7.56805 7.62201 7.64443 7.76897 7.85865 7.99731 8.35845 9.22505 9.82498 10.47907 11.39601 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.004485 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.601679 B = 6241.941592 C = 7699.297196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.152 4.152 3 C -0.064 4.064 4 O 0.123 5.877 5 N -0.321 5.321 6 C -0.025 4.025 7 C 0.602 3.398 8 O -0.527 6.527 9 N -0.597 5.597 10 C 0.085 3.915 11 C 0.069 3.931 12 H 0.069 0.931 13 C -0.139 4.139 14 O -0.353 6.353 15 C 0.095 3.905 16 C -0.129 4.129 17 C 0.158 3.842 18 N -0.599 5.599 19 C -0.224 4.224 20 H 0.074 0.926 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.286 1.286 27 C 0.124 3.876 28 C 0.077 3.923 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.223 0.777 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.025 0.975 44 H 0.022 0.978 45 H 0.124 0.876 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.168 5.216 15.416 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.157 4.157 3 C -0.145 4.145 4 O 0.049 5.951 5 N -0.023 5.023 6 C -0.184 4.184 7 C 0.388 3.612 8 O -0.403 6.403 9 N -0.329 5.329 10 C -0.037 4.037 11 C 0.010 3.990 12 H 0.087 0.913 13 C -0.197 4.197 14 O -0.272 6.272 15 C 0.054 3.946 16 C -0.168 4.168 17 C 0.033 3.967 18 N -0.325 5.325 19 C -0.352 4.352 20 H 0.092 0.908 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.745 3.255 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.212 1.212 27 C -0.003 4.003 28 C -0.046 4.046 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.239 0.761 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.036 0.964 42 H 0.064 0.936 43 H 0.042 0.958 44 H 0.040 0.960 45 H 0.141 0.859 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.326 4.288 15.282 18.409 hybrid contribution -1.055 0.628 -0.954 1.555 sum -10.381 4.916 14.328 18.364 Atomic orbital electron populations 1.20190 0.86593 1.03826 1.03043 1.21332 0.99077 0.90045 1.05229 1.25778 0.82409 1.01266 1.05025 1.84812 1.29509 1.15502 1.65296 1.74145 1.21203 0.91437 1.15561 1.23373 0.89628 0.96858 1.08524 1.16906 0.84987 0.82409 0.76867 1.90742 1.17274 1.81474 1.50800 1.48042 1.09274 1.06375 1.69223 1.22450 1.02739 0.79114 0.99361 1.22467 0.84204 0.95782 0.96531 0.91344 1.21676 1.01826 0.92898 1.03267 1.87864 1.22670 1.24398 1.92299 1.22301 0.98069 0.81263 0.92942 1.23008 0.90742 1.01223 1.01855 1.21949 0.92458 0.97093 0.85183 1.44474 1.06849 1.75344 1.05807 1.18999 0.96845 1.35645 0.83717 0.90787 1.24760 0.95847 1.01427 0.98358 1.69777 1.01561 1.51732 1.33828 0.86158 0.76740 0.78275 0.84351 1.21181 1.21461 1.21245 1.21678 0.92715 0.97168 0.88718 1.22987 0.79939 1.02860 0.98784 0.90612 0.90974 0.89654 0.76053 0.88138 0.90410 0.91098 0.91766 0.91102 0.90509 0.90937 0.87426 0.96404 0.93631 0.95771 0.96026 0.85909 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.97 36.01 0.36 -0.38 16 2 C -0.15 -1.74 6.34 -104.11 -0.66 -2.40 16 3 C -0.06 -0.57 12.24 29.69 0.36 -0.20 16 4 O 0.12 1.45 11.18 17.25 0.19 1.64 16 5 N -0.32 -4.63 8.69 33.29 0.29 -4.34 16 6 C -0.03 -0.37 6.88 -82.52 -0.57 -0.94 16 7 C 0.60 9.72 7.73 -12.11 -0.09 9.63 16 8 O -0.53 -9.05 14.90 5.37 0.08 -8.97 16 9 N -0.60 -9.39 2.95 -173.56 -0.51 -9.90 16 10 C 0.09 1.19 5.93 -3.53 -0.02 1.17 16 11 C 0.07 1.06 3.17 -26.59 -0.08 0.97 16 12 H 0.07 1.18 6.25 -51.92 -0.32 0.86 16 13 C -0.14 -1.68 9.57 37.15 0.36 -1.33 16 14 O -0.35 -6.57 9.90 -35.23 -0.35 -6.92 16 15 C 0.10 1.81 0.81 -89.73 -0.07 1.74 16 16 C -0.13 -2.55 6.21 -24.87 -0.15 -2.71 16 17 C 0.16 3.96 5.89 -2.44 -0.01 3.94 16 18 N -0.60 -15.94 3.40 -170.23 -0.58 -16.52 16 19 C -0.22 -6.42 10.28 -15.06 -0.15 -6.58 16 20 H 0.07 2.07 7.83 -52.48 -0.41 1.66 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 22 N -0.92 -27.07 10.09 55.49 0.56 -26.51 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.12 2.79 6.34 -3.32 -0.02 2.77 16 28 C 0.08 1.26 4.82 -3.86 -0.02 1.24 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.98 7.02 -51.93 -0.36 0.62 16 32 H 0.22 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.10 1.34 7.06 -51.93 -0.37 0.98 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.43 8.01 -51.93 -0.42 1.02 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.11 2.97 5.89 -51.92 -0.31 2.66 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.02 0.57 6.03 -51.93 -0.31 0.26 16 44 H 0.02 0.50 7.61 -51.93 -0.40 0.11 16 45 H 0.12 2.09 4.17 -52.22 -0.22 1.87 16 46 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -33.69 363.15 -7.22 -40.91 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.48 Total: 1.17 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -0.88 Total: 6.60 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.24 Total: -57.27 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.08 Total: -14.24 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.69 -7.22 -40.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071227525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.031 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds