Wall clock time and date at job start Tue Mar 31 2020 18:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35316 * 128.03934 * 2 1 4 4 O 1.34016 * 106.66831 * 180.22816 * 3 2 1 5 5 N 1.20900 * 111.84905 * 359.76363 * 4 3 2 6 6 C 1.30990 * 111.43780 * 359.97438 * 5 4 3 7 7 C 1.48333 * 126.93724 * 179.97438 * 6 5 4 8 8 O 1.21495 * 119.99807 * 174.15322 * 7 6 5 9 9 N 1.34773 * 119.99937 * 354.15180 * 7 6 5 10 10 C 1.47178 * 121.05958 * 173.61030 * 9 7 6 11 11 C 1.53281 * 108.49408 * 128.77050 * 10 9 7 12 12 H 1.09008 * 109.51222 * 293.01551 * 11 10 9 13 13 C 1.52993 * 109.51289 * 172.91439 * 11 10 9 14 14 O 1.43087 * 109.22521 * 52.98611 * 11 10 9 15 15 C 1.42061 * 114.40572 * 298.86629 * 14 11 10 16 16 C 1.54514 * 110.33199 * 182.54238 * 15 14 11 17 17 C 1.55017 * 101.53458 * 83.94507 * 16 15 14 18 18 N 1.47478 * 104.90329 * 36.37248 * 17 16 15 19 19 C 1.36940 * 125.66807 * 155.98526 * 18 17 16 20 20 H 1.08004 * 119.99914 * 180.02562 * 19 18 17 21 21 C 1.38804 * 119.99739 * 0.02562 * 19 18 17 22 22 N 1.31618 * 120.00667 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99781 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47317 * 59.99722 * 23 21 19 25 25 H 1.48498 * 109.47232 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47060 * 299.99960 * 23 21 19 27 27 C 1.47191 * 108.66641 * 335.98027 * 18 17 16 28 28 C 1.47288 * 121.06650 * 353.59214 * 9 7 6 29 29 H 1.09003 * 109.46729 * 270.14695 * 1 2 3 30 30 H 1.08996 * 109.46982 * 30.14406 * 1 2 3 31 31 H 1.08996 * 109.46880 * 150.15100 * 1 2 3 32 32 H 1.08000 * 126.66538 * 359.96850 * 3 2 1 33 33 H 1.09006 * 109.63221 * 9.06861 * 10 9 7 34 34 H 1.08995 * 109.79843 * 248.57340 * 10 9 7 35 35 H 1.09005 * 109.47384 * 59.99990 * 13 11 10 36 36 H 1.08997 * 109.47342 * 299.99978 * 13 11 10 37 37 H 1.08999 * 109.47330 * 179.97438 * 13 11 10 38 38 H 1.09004 * 111.01086 * 202.00752 * 16 15 14 39 39 H 1.08997 * 111.01454 * 325.88008 * 16 15 14 40 40 H 1.09010 * 110.35651 * 155.22767 * 17 16 15 41 41 H 1.09003 * 110.35399 * 277.51521 * 17 16 15 42 42 H 0.96996 * 120.00479 * 180.02562 * 22 21 19 43 43 H 1.09006 * 109.90695 * 242.14018 * 27 18 17 44 44 H 1.09004 * 109.90633 * 120.88708 * 27 18 17 45 45 H 1.08998 * 109.63196 * 349.05543 * 28 9 7 46 46 H 1.08995 * 109.63717 * 109.67205 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5774 -0.0051 5 7 3.5989 -0.6316 -0.0035 6 6 2.3837 -1.1205 0.0034 7 6 1.9993 -2.5531 0.0068 8 8 0.8315 -2.8684 0.1204 9 7 2.9454 -3.5050 -0.1162 10 6 2.6103 -4.9313 0.0234 11 6 3.1648 -5.6823 -1.1923 12 1 2.6288 -5.3701 -2.0887 13 6 2.9857 -7.1879 -0.9882 14 8 4.5562 -5.3817 -1.3374 15 6 4.8400 -4.0072 -1.5572 16 6 6.3570 -3.7985 -1.7632 17 6 6.5114 -4.1157 -3.2727 18 7 5.2856 -3.5862 -3.8989 19 6 5.1559 -3.2128 -5.2100 20 1 4.2115 -2.8348 -5.5729 21 6 6.2382 -3.3201 -6.0724 22 7 7.3890 -3.7812 -5.6302 23 14 6.0616 -2.8101 -7.8607 24 1 5.6873 -1.3747 -7.9315 25 1 7.3519 -3.0199 -8.5651 26 1 5.0052 -3.6295 -8.5071 27 6 4.2246 -3.5259 -2.8804 28 6 4.3478 -3.1512 -0.3949 29 1 -0.3633 0.0026 1.0277 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3633 -0.8913 -0.5115 32 1 2.0559 2.1075 -0.0005 33 1 1.5276 -5.0507 0.0651 34 1 3.0578 -5.3283 0.9345 35 1 1.9259 -7.4156 -0.8734 36 1 3.5234 -7.4997 -0.0928 37 1 3.3798 -7.7213 -1.8533 38 1 6.6425 -2.7685 -1.5491 39 1 6.9336 -4.4965 -1.1562 40 1 7.3908 -3.6146 -3.6776 41 1 6.5821 -5.1922 -3.4286 42 1 8.1454 -3.8558 -6.2328 43 1 3.3993 -4.1785 -3.1651 44 1 3.8705 -2.5005 -2.7737 45 1 4.4131 -2.0968 -0.6631 46 1 4.9571 -3.3463 0.4875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071227525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:14 Heat of formation + Delta-G solvation = 13.761318 kcal Electronic energy + Delta-G solvation = -30955.471218 eV Core-core repulsion = 26849.614219 eV Total energy + Delta-G solvation = -4105.856999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.18216 -41.94517 -40.19586 -37.96604 -36.21488 -35.75869 -34.89321 -33.50935 -32.93139 -31.14185 -29.90253 -29.22195 -28.14182 -27.61348 -25.71198 -24.88701 -23.19957 -22.73395 -22.16504 -21.33419 -20.45122 -19.11182 -18.94587 -18.78294 -18.11317 -17.83132 -17.23257 -16.88973 -16.60484 -16.14310 -15.74738 -15.47280 -15.39334 -15.04177 -14.78947 -14.44862 -14.27650 -14.19583 -14.04822 -13.93246 -13.61096 -13.41242 -13.22418 -13.09795 -12.88250 -12.81145 -12.75487 -12.42044 -12.26504 -12.20110 -12.06648 -11.97264 -11.75976 -11.62641 -11.41672 -11.17928 -11.05876 -10.79118 -10.39970 -9.73699 -8.97894 -7.82524 -5.28625 -0.00938 0.69446 1.42748 1.45904 1.46689 1.53216 1.89010 2.21152 2.44362 2.51331 2.70754 3.24650 3.32843 3.38454 3.57693 3.66863 3.74728 3.78779 3.89378 3.96739 4.03971 4.11598 4.27489 4.32616 4.40351 4.47632 4.56945 4.59426 4.62693 4.71487 4.77190 4.81223 4.85740 4.91590 4.91959 4.96181 5.01676 5.10265 5.24691 5.30779 5.36957 5.55997 5.73291 5.93141 6.20840 6.23990 6.63497 7.04206 7.04593 7.68727 8.33847 9.19132 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.004485 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.601679 B = 6241.941592 C = 7699.297196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.173 4.173 3 C -0.033 4.033 4 O 0.125 5.875 5 N -0.346 5.346 6 C -0.058 4.058 7 C 0.596 3.404 8 O -0.545 6.545 9 N -0.602 5.602 10 C 0.089 3.911 11 C 0.064 3.936 12 H 0.040 0.960 13 C -0.132 4.132 14 O -0.368 6.368 15 C 0.106 3.894 16 C -0.115 4.115 17 C 0.163 3.837 18 N -0.619 5.619 19 C -0.250 4.250 20 H 0.072 0.928 21 C -0.058 4.058 22 N -0.943 5.943 23 Si 0.982 3.018 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.281 1.281 27 C 0.127 3.873 28 C 0.089 3.911 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.278 0.722 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.081 0.919 41 H -0.014 1.014 42 H 0.251 0.749 43 H 0.010 0.990 44 H 0.015 0.985 45 H 0.120 0.880 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.020 6.752 16.738 21.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.178 4.178 3 C -0.113 4.113 4 O 0.050 5.950 5 N -0.047 5.047 6 C -0.215 4.215 7 C 0.384 3.616 8 O -0.422 6.422 9 N -0.334 5.334 10 C -0.032 4.032 11 C 0.006 3.994 12 H 0.058 0.942 13 C -0.189 4.189 14 O -0.288 6.288 15 C 0.065 3.935 16 C -0.154 4.154 17 C 0.038 3.962 18 N -0.345 5.345 19 C -0.379 4.379 20 H 0.090 0.910 21 C -0.251 4.251 22 N -0.592 5.592 23 Si 0.809 3.191 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.207 1.207 27 C 0.001 3.999 28 C -0.034 4.034 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.293 0.707 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.004 0.996 42 H 0.060 0.940 43 H 0.028 0.972 44 H 0.033 0.967 45 H 0.137 0.863 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.194 5.801 16.625 20.346 hybrid contribution -0.850 0.186 -1.392 1.641 sum -11.043 5.987 15.234 19.745 Atomic orbital electron populations 1.20205 0.85411 1.03887 1.03691 1.21702 1.00112 0.89750 1.06234 1.26715 0.80375 1.02778 1.01457 1.84764 1.31061 1.14626 1.64518 1.74092 1.21391 0.92540 1.16699 1.23470 0.90834 0.96767 1.10402 1.17211 0.84776 0.83278 0.76360 1.90716 1.17810 1.82016 1.51704 1.48134 1.08990 1.07105 1.69188 1.22517 1.03188 0.78196 0.99341 1.22673 0.82342 0.98181 0.96206 0.94161 1.21688 1.03804 0.90059 1.03379 1.87842 1.24723 1.23942 1.92248 1.22104 0.97075 0.82211 0.92138 1.22868 0.91893 1.02637 0.98010 1.21702 0.91164 0.94606 0.88731 1.44758 1.08414 1.75227 1.06077 1.19322 0.97068 1.36272 0.85217 0.91035 1.25621 0.95475 1.01446 1.02545 1.70019 1.02006 1.52222 1.34964 0.85115 0.76674 0.78245 0.79034 1.20064 1.21220 1.20737 1.21735 0.91697 0.96493 0.89969 1.22806 0.80589 1.01923 0.98114 0.89678 0.87933 0.92472 0.70701 0.87571 0.88047 0.88434 0.90106 0.92447 0.89145 0.88584 0.90144 0.99628 0.93967 0.97199 0.96706 0.86268 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 9.97 71.24 0.71 -0.56 16 2 C -0.17 -3.63 6.34 -19.54 -0.12 -3.76 16 3 C -0.03 -0.47 12.24 67.15 0.82 0.35 16 4 O 0.13 2.70 11.18 71.89 0.80 3.51 16 5 N -0.35 -9.61 8.69 -49.51 -0.43 -10.04 16 6 C -0.06 -1.66 6.88 42.96 0.30 -1.37 16 7 C 0.60 19.22 7.73 86.93 0.67 19.89 16 8 O -0.55 -18.83 14.90 -3.70 -0.06 -18.88 16 9 N -0.60 -18.64 2.95 -821.33 -2.42 -21.06 16 10 C 0.09 2.39 5.93 86.34 0.51 2.90 16 11 C 0.06 1.96 3.17 30.69 0.10 2.06 16 12 H 0.04 1.45 6.25 -2.38 -0.01 1.44 16 13 C -0.13 -3.04 9.57 71.98 0.69 -2.35 16 14 O -0.37 -13.66 9.90 -148.97 -1.47 -15.14 16 15 C 0.11 4.03 0.81 -10.22 -0.01 4.02 16 16 C -0.12 -4.55 6.21 31.80 0.20 -4.35 16 17 C 0.16 8.46 5.89 86.88 0.51 8.97 16 18 N -0.62 -34.17 3.40 -692.48 -2.36 -36.53 16 19 C -0.25 -14.80 10.28 84.03 0.86 -13.94 16 20 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 21 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 22 N -0.94 -57.04 10.09 21.65 0.22 -56.82 16 23 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 27 C 0.13 5.93 6.34 86.47 0.55 6.48 16 28 C 0.09 2.82 4.82 86.07 0.42 3.24 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.30 7.02 -2.39 -0.02 1.29 16 32 H 0.28 0.52 8.06 -2.91 -0.02 0.50 16 33 H 0.11 2.74 7.06 -2.38 -0.02 2.72 16 34 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 35 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 3.31 8.01 -2.38 -0.02 3.29 16 39 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 40 H 0.08 4.63 5.89 -2.38 -0.01 4.61 16 41 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 42 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.01 0.50 6.03 -2.38 -0.01 0.49 16 44 H 0.02 0.72 7.61 -2.39 -0.02 0.70 16 45 H 0.12 4.00 4.17 -2.95 -0.01 3.98 16 46 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -77.07 363.15 3.98 -73.08 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.00 Total: 14.56 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 6.67 Total: 18.71 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -4.99 Total: -124.44 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.73 Total: -30.51 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -77.07 3.98 -73.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071227525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.845 kcal (2) G-P(sol) polarization free energy of solvation -77.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds