Wall clock time and date at job start Tue Mar 31 2020 18:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30620 * 125.42060 * 2 1 4 4 C 1.33697 * 108.99291 * 180.26092 * 3 2 1 5 5 C 1.50697 * 126.27099 * 179.97438 * 4 3 2 6 6 C 1.36344 * 107.45404 * 0.02562 * 4 3 2 7 7 C 1.46719 * 126.64131 * 179.97438 * 6 4 3 8 8 O 1.21684 * 120.00555 * 7.69734 * 7 6 4 9 9 N 1.34780 * 119.99952 * 187.70673 * 7 6 4 10 10 C 1.46849 * 120.40964 * 7.24873 * 9 7 6 11 11 C 1.53366 * 109.24915 * 127.72630 * 10 9 7 12 12 C 1.52789 * 108.81488 * 53.83534 * 11 10 9 13 13 H 1.08995 * 109.34722 * 57.16384 * 12 11 10 14 14 O 1.42605 * 111.10881 * 177.47556 * 12 11 10 15 15 C 1.43149 * 113.63158 * 183.61000 * 14 12 11 16 16 C 1.53192 * 109.74057 * 298.31119 * 15 14 12 17 17 N 1.47352 * 108.80127 * 51.21047 * 16 15 14 18 18 C 1.36936 * 121.30169 * 129.73617 * 17 16 15 19 19 H 1.08000 * 119.99576 * 211.66149 * 18 17 16 20 20 C 1.38808 * 120.00236 * 31.66852 * 18 17 16 21 21 N 1.31621 * 119.99935 * 11.56344 * 20 18 17 22 22 Si 1.86803 * 119.99937 * 191.56004 * 20 18 17 23 23 H 1.48503 * 109.46776 * 90.00105 * 22 20 18 24 24 H 1.48500 * 109.47199 * 209.99690 * 22 20 18 25 25 H 1.48498 * 109.47190 * 330.00167 * 22 20 18 26 26 C 1.46871 * 117.38931 * 309.75809 * 17 16 15 27 27 H 1.09001 * 109.65568 * 292.35242 * 26 17 16 28 28 C 1.47126 * 120.41343 * 186.97457 * 9 7 6 29 29 O 1.33666 * 125.42474 * 180.31279 * 2 1 3 30 30 H 1.08997 * 109.47246 * 269.68954 * 1 2 3 31 31 H 1.09000 * 109.47183 * 29.69270 * 1 2 3 32 32 H 1.09004 * 109.47135 * 149.68794 * 1 2 3 33 33 H 1.08997 * 109.47818 * 270.00725 * 5 4 3 34 34 H 1.09002 * 109.47177 * 30.01361 * 5 4 3 35 35 H 1.09004 * 109.47050 * 150.00349 * 5 4 3 36 36 H 1.08998 * 109.50870 * 247.66338 * 10 9 7 37 37 H 1.09001 * 109.50520 * 7.79795 * 10 9 7 38 38 H 1.08997 * 109.57784 * 173.63402 * 11 10 9 39 39 H 1.08999 * 109.58139 * 294.03881 * 11 10 9 40 40 H 1.08996 * 109.42464 * 178.22412 * 15 14 12 41 41 H 1.09001 * 109.38052 * 58.36752 * 15 14 12 42 42 H 1.09003 * 109.58035 * 291.41493 * 16 15 14 43 43 H 1.08995 * 109.58481 * 171.00767 * 16 15 14 44 44 H 0.97001 * 119.99700 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.72477 * 352.91601 * 28 9 7 46 46 H 1.09000 * 109.72903 * 113.59224 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5464 0.6864 -0.0058 5 6 4.7452 1.5996 -0.0083 6 6 3.5708 -0.6769 -0.0100 7 6 4.7636 -1.5312 -0.0175 8 8 5.8669 -1.0371 0.1208 9 7 4.6372 -2.8635 -0.1775 10 6 3.3320 -3.4526 -0.5030 11 6 3.4761 -4.3497 -1.7386 12 6 4.5932 -5.3609 -1.4857 13 1 4.3656 -5.9329 -0.5863 14 8 4.7305 -6.2598 -2.5842 15 6 5.7085 -7.2829 -2.3696 16 6 7.0883 -6.6468 -2.1737 17 7 6.9866 -5.6009 -1.1407 18 6 7.8571 -5.5571 -0.0845 19 1 7.5267 -5.1806 0.8723 20 6 9.1642 -5.9964 -0.2437 21 7 9.6347 -6.2392 -1.4487 22 14 10.2554 -6.2430 1.2524 23 1 10.1102 -7.6358 1.7467 24 1 11.6711 -5.9955 0.8787 25 1 9.8522 -5.2940 2.3210 26 6 5.9148 -4.6076 -1.2880 27 1 6.1130 -3.9805 -2.1573 28 6 5.8063 -3.7451 -0.0343 29 8 2.2818 -1.0892 -0.0059 30 1 -0.3633 -0.0056 1.0276 31 1 -0.3633 0.8927 -0.5090 32 1 -0.3633 -0.8872 -0.5187 33 1 5.0302 1.8222 -1.0365 34 1 4.4969 2.5265 0.5087 35 1 5.5755 1.1106 0.5012 36 1 2.9808 -4.0476 0.3400 37 1 2.6159 -2.6578 -0.7118 38 1 2.5394 -4.8774 -1.9180 39 1 3.7257 -3.7390 -2.6062 40 1 5.7346 -7.9464 -3.2340 41 1 5.4438 -7.8557 -1.4808 42 1 7.4224 -6.2028 -3.1114 43 1 7.7995 -7.4082 -1.8538 44 1 10.5480 -6.5466 -1.5598 45 1 6.7089 -3.1441 0.0764 46 1 5.6800 -4.3848 0.8391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074195171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:47 Heat of formation + Delta-G solvation = -16.954943 kcal Electronic energy + Delta-G solvation = -30513.340715 eV Core-core repulsion = 26406.151760 eV Total energy + Delta-G solvation = -4107.188956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.64017 -40.08797 -38.58520 -36.41317 -35.32457 -34.72183 -33.01443 -31.85205 -31.45282 -30.01577 -29.50399 -27.95601 -26.85402 -25.06181 -24.03197 -22.55727 -22.12490 -21.77487 -21.15236 -19.93810 -19.56398 -17.46996 -17.27938 -16.78848 -16.33447 -15.85836 -15.44886 -15.22714 -15.06186 -14.60033 -14.43313 -14.09861 -13.80007 -13.78250 -13.46126 -13.38217 -13.29739 -13.12168 -12.95204 -12.87615 -12.64013 -12.42329 -12.22440 -11.92566 -11.38689 -11.15012 -11.08269 -11.01075 -10.96515 -10.76325 -10.57796 -10.30013 -10.23495 -10.08727 -9.98216 -9.63059 -9.05003 -8.94997 -8.58087 -8.44356 -6.71431 -5.87464 -3.38290 0.70303 2.18862 2.23796 2.98467 3.12589 3.33208 3.40645 3.41770 3.67449 4.21851 4.39192 4.42617 4.57047 4.82660 4.93479 4.97349 5.01697 5.15314 5.27266 5.32432 5.35036 5.39705 5.41272 5.58828 5.60322 5.67673 5.70696 5.77648 5.82374 5.88376 5.98231 6.06834 6.09030 6.19748 6.22804 6.29020 6.41700 6.56655 6.61477 6.81865 7.07655 7.30285 7.46802 7.49223 7.68224 7.85309 8.07428 8.31444 9.06636 9.68400 10.28604 11.20487 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014954 B = 0.003676 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.952158 B = 7614.516071 C = 8974.582220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.207 3.793 3 N -0.489 5.489 4 C 0.080 3.920 5 C -0.084 4.084 6 C -0.110 4.110 7 C 0.605 3.395 8 O -0.509 6.509 9 N -0.599 5.599 10 C 0.103 3.897 11 C -0.122 4.122 12 C 0.076 3.924 13 H 0.053 0.947 14 O -0.389 6.389 15 C 0.039 3.961 16 C 0.145 3.855 17 N -0.587 5.587 18 C -0.263 4.263 19 H 0.070 0.930 20 C 0.012 3.988 21 N -0.899 5.899 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.277 1.277 26 C 0.137 3.863 27 H 0.038 0.962 28 C 0.125 3.875 29 O -0.183 6.183 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.041 0.959 42 H 0.029 0.971 43 H 0.091 0.909 44 H 0.256 0.744 45 H 0.106 0.894 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.517 8.044 1.716 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.002 3.998 3 N -0.220 5.220 4 C -0.044 4.044 5 C -0.141 4.141 6 C -0.165 4.165 7 C 0.391 3.609 8 O -0.387 6.387 9 N -0.332 5.332 10 C -0.020 4.020 11 C -0.161 4.161 12 C 0.017 3.983 13 H 0.071 0.929 14 O -0.308 6.308 15 C -0.039 4.039 16 C 0.019 3.981 17 N -0.311 5.311 18 C -0.393 4.393 19 H 0.087 0.913 20 C -0.188 4.188 21 N -0.542 5.542 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.202 1.202 26 C 0.029 3.971 27 H 0.056 0.944 28 C 0.004 3.996 29 O -0.071 6.071 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.125 0.875 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.076 8.787 1.595 20.162 hybrid contribution 0.968 -1.040 0.804 1.633 sum -17.108 7.747 2.400 18.933 Atomic orbital electron populations 1.20362 0.80958 1.05485 1.05005 1.26628 0.96759 0.79264 0.97179 1.70342 1.01659 1.30017 1.19981 1.22047 0.93397 0.91275 0.97706 1.20428 0.92438 0.97421 1.03773 1.23015 0.82197 0.95133 1.16108 1.16456 0.85386 0.81280 0.77753 1.90870 1.23959 1.73053 1.50801 1.48165 1.10985 1.05659 1.68368 1.22071 0.84594 0.97826 0.97494 1.21836 0.99153 0.97094 0.98032 1.22445 0.95454 0.90861 0.89572 0.92942 1.87742 1.59814 1.42529 1.40731 1.23346 0.91126 0.89493 0.99952 1.21397 0.92451 0.92279 0.91924 1.43966 1.33007 1.26713 1.27451 1.19089 0.89871 1.41301 0.88990 0.91257 1.25200 0.96399 1.00901 0.96307 1.69991 1.15686 1.48509 1.20029 0.86260 0.79957 0.78115 0.82261 1.21312 1.21537 1.20168 1.21216 0.89441 0.90886 0.95559 0.94416 1.21781 0.87411 0.91970 0.98394 1.84619 1.16450 1.36275 1.69734 0.88527 0.87876 0.88919 0.90036 0.90547 0.88258 0.90932 0.88200 0.90069 0.90866 0.90033 0.94110 0.95256 0.89058 0.93400 0.87535 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.21 2.19 8.32 -12.79 -0.11 2.08 16 3 N -0.49 -6.35 11.26 -7.07 -0.08 -6.43 16 4 C 0.08 1.12 7.16 -82.46 -0.59 0.53 16 5 C -0.08 -1.03 9.96 36.00 0.36 -0.67 16 6 C -0.11 -1.61 6.78 -36.84 -0.25 -1.86 16 7 C 0.60 10.31 7.64 -12.83 -0.10 10.21 16 8 O -0.51 -9.99 14.19 5.20 0.07 -9.92 16 9 N -0.60 -9.87 2.99 -174.47 -0.52 -10.39 16 10 C 0.10 1.35 6.08 -3.66 -0.02 1.33 16 11 C -0.12 -1.74 5.82 -26.65 -0.16 -1.89 16 12 C 0.08 1.38 2.48 -26.63 -0.07 1.32 16 13 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 14 O -0.39 -7.61 10.49 -35.23 -0.37 -7.98 16 15 C 0.04 0.75 6.95 37.26 0.26 1.01 16 16 C 0.14 3.42 5.37 -3.48 -0.02 3.40 16 17 N -0.59 -14.43 3.02 -164.61 -0.50 -14.93 16 18 C -0.26 -6.95 8.77 -15.06 -0.13 -7.08 16 19 H 0.07 1.78 6.37 -52.49 -0.33 1.44 16 20 C 0.01 0.32 5.05 -17.43 -0.09 0.24 16 21 N -0.90 -25.58 11.25 55.49 0.62 -24.96 16 22 Si 0.90 21.33 29.57 -169.99 -5.03 16.30 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.14 2.90 3.01 -67.75 -0.20 2.70 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 28 C 0.13 2.44 4.53 -3.93 -0.02 2.42 16 29 O -0.18 -2.23 7.46 4.43 0.03 -2.19 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.35 6.34 -51.93 -0.33 1.02 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.18 4.29 -52.64 -0.23 0.96 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 2.33 6.44 -51.93 -0.33 2.00 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 45 H 0.11 2.36 6.81 -51.93 -0.35 2.01 16 46 H 0.08 1.48 7.33 -51.93 -0.38 1.10 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -32.19 361.68 -7.65 -39.84 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.59 Total: 1.42 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: -0.75 Total: 13.78 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.47 Total: -56.70 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.26 Total: -20.10 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.19 -7.65 -39.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074195171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.884 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds