Wall clock time and date at job start Tue Mar 31 2020 18:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30620 * 125.42060 * 2 1 4 4 C 1.33697 * 108.99291 * 180.26092 * 3 2 1 5 5 C 1.50697 * 126.27099 * 179.97438 * 4 3 2 6 6 C 1.36344 * 107.45404 * 0.02562 * 4 3 2 7 7 C 1.46719 * 126.64131 * 179.97438 * 6 4 3 8 8 O 1.21684 * 120.00555 * 7.69734 * 7 6 4 9 9 N 1.34780 * 119.99952 * 187.70673 * 7 6 4 10 10 C 1.46849 * 120.40964 * 7.24873 * 9 7 6 11 11 C 1.53366 * 109.24915 * 127.72630 * 10 9 7 12 12 C 1.52789 * 108.81488 * 53.83534 * 11 10 9 13 13 H 1.08995 * 109.34722 * 57.16384 * 12 11 10 14 14 O 1.42605 * 111.10881 * 177.47556 * 12 11 10 15 15 C 1.43149 * 113.63158 * 183.61000 * 14 12 11 16 16 C 1.53192 * 109.74057 * 298.31119 * 15 14 12 17 17 N 1.47352 * 108.80127 * 51.21047 * 16 15 14 18 18 C 1.36936 * 121.30169 * 129.73617 * 17 16 15 19 19 H 1.08000 * 119.99576 * 211.66149 * 18 17 16 20 20 C 1.38808 * 120.00236 * 31.66852 * 18 17 16 21 21 N 1.31621 * 119.99935 * 11.56344 * 20 18 17 22 22 Si 1.86803 * 119.99937 * 191.56004 * 20 18 17 23 23 H 1.48503 * 109.46776 * 90.00105 * 22 20 18 24 24 H 1.48500 * 109.47199 * 209.99690 * 22 20 18 25 25 H 1.48498 * 109.47190 * 330.00167 * 22 20 18 26 26 C 1.46871 * 117.38931 * 309.75809 * 17 16 15 27 27 H 1.09001 * 109.65568 * 292.35242 * 26 17 16 28 28 C 1.47126 * 120.41343 * 186.97457 * 9 7 6 29 29 O 1.33666 * 125.42474 * 180.31279 * 2 1 3 30 30 H 1.08997 * 109.47246 * 269.68954 * 1 2 3 31 31 H 1.09000 * 109.47183 * 29.69270 * 1 2 3 32 32 H 1.09004 * 109.47135 * 149.68794 * 1 2 3 33 33 H 1.08997 * 109.47818 * 270.00725 * 5 4 3 34 34 H 1.09002 * 109.47177 * 30.01361 * 5 4 3 35 35 H 1.09004 * 109.47050 * 150.00349 * 5 4 3 36 36 H 1.08998 * 109.50870 * 247.66338 * 10 9 7 37 37 H 1.09001 * 109.50520 * 7.79795 * 10 9 7 38 38 H 1.08997 * 109.57784 * 173.63402 * 11 10 9 39 39 H 1.08999 * 109.58139 * 294.03881 * 11 10 9 40 40 H 1.08996 * 109.42464 * 178.22412 * 15 14 12 41 41 H 1.09001 * 109.38052 * 58.36752 * 15 14 12 42 42 H 1.09003 * 109.58035 * 291.41493 * 16 15 14 43 43 H 1.08995 * 109.58481 * 171.00767 * 16 15 14 44 44 H 0.97001 * 119.99700 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.72477 * 352.91601 * 28 9 7 46 46 H 1.09000 * 109.72903 * 113.59224 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5464 0.6864 -0.0058 5 6 4.7452 1.5996 -0.0083 6 6 3.5708 -0.6769 -0.0100 7 6 4.7636 -1.5312 -0.0175 8 8 5.8669 -1.0371 0.1208 9 7 4.6372 -2.8635 -0.1775 10 6 3.3320 -3.4526 -0.5030 11 6 3.4761 -4.3497 -1.7386 12 6 4.5932 -5.3609 -1.4857 13 1 4.3656 -5.9329 -0.5863 14 8 4.7305 -6.2598 -2.5842 15 6 5.7085 -7.2829 -2.3696 16 6 7.0883 -6.6468 -2.1737 17 7 6.9866 -5.6009 -1.1407 18 6 7.8571 -5.5571 -0.0845 19 1 7.5267 -5.1806 0.8723 20 6 9.1642 -5.9964 -0.2437 21 7 9.6347 -6.2392 -1.4487 22 14 10.2554 -6.2430 1.2524 23 1 10.1102 -7.6358 1.7467 24 1 11.6711 -5.9955 0.8787 25 1 9.8522 -5.2940 2.3210 26 6 5.9148 -4.6076 -1.2880 27 1 6.1130 -3.9805 -2.1573 28 6 5.8063 -3.7451 -0.0343 29 8 2.2818 -1.0892 -0.0059 30 1 -0.3633 -0.0056 1.0276 31 1 -0.3633 0.8927 -0.5090 32 1 -0.3633 -0.8872 -0.5187 33 1 5.0302 1.8222 -1.0365 34 1 4.4969 2.5265 0.5087 35 1 5.5755 1.1106 0.5012 36 1 2.9808 -4.0476 0.3400 37 1 2.6159 -2.6578 -0.7118 38 1 2.5394 -4.8774 -1.9180 39 1 3.7257 -3.7390 -2.6062 40 1 5.7346 -7.9464 -3.2340 41 1 5.4438 -7.8557 -1.4808 42 1 7.4224 -6.2028 -3.1114 43 1 7.7995 -7.4082 -1.8538 44 1 10.5480 -6.5466 -1.5598 45 1 6.7089 -3.1441 0.0764 46 1 5.6800 -4.3848 0.8391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074195171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:46 Heat of formation + Delta-G solvation = -40.982333 kcal Electronic energy + Delta-G solvation = -30514.382621 eV Core-core repulsion = 26406.151760 eV Total energy + Delta-G solvation = -4108.230861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.59929 -41.50277 -40.08916 -37.75621 -36.58934 -36.32491 -33.96176 -33.39697 -33.09046 -31.55521 -30.27918 -29.36467 -28.39959 -26.54191 -25.59278 -24.02073 -23.30430 -22.88580 -22.42280 -21.53208 -20.90729 -18.82195 -18.61138 -18.20827 -17.64929 -17.15766 -16.92484 -16.83343 -16.40818 -16.23831 -15.67471 -15.57330 -15.21595 -15.12958 -14.74804 -14.70870 -14.44145 -14.29532 -14.05583 -13.84957 -13.75020 -13.45846 -13.37012 -13.14237 -13.03055 -12.86018 -12.72141 -12.49546 -12.39052 -12.11901 -12.07042 -11.99999 -11.92828 -11.61711 -11.29350 -11.27053 -10.75069 -10.56957 -10.11351 -9.71939 -8.71578 -7.93494 -5.47705 -0.33447 1.16495 1.27341 1.44148 1.45678 1.54202 1.76060 1.90298 2.44497 2.78821 2.87184 3.22929 3.34137 3.39011 3.59250 3.76932 3.86019 3.98798 4.13624 4.15408 4.18300 4.28411 4.36222 4.45400 4.49426 4.52157 4.57221 4.61899 4.63348 4.68571 4.74540 4.80953 4.85961 4.90310 4.94761 5.01573 5.08409 5.14032 5.19631 5.28822 5.37659 5.51642 5.59147 6.06981 6.24336 6.31773 6.48248 6.77667 7.02968 7.68311 8.26392 9.12610 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014954 B = 0.003676 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.952158 B = 7614.516071 C = 8974.582220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.231 3.769 3 N -0.515 5.515 4 C 0.081 3.919 5 C -0.083 4.083 6 C -0.136 4.136 7 C 0.602 3.398 8 O -0.549 6.549 9 N -0.601 5.601 10 C 0.104 3.896 11 C -0.113 4.113 12 C 0.081 3.919 13 H 0.061 0.939 14 O -0.392 6.392 15 C 0.051 3.949 16 C 0.149 3.851 17 N -0.604 5.604 18 C -0.266 4.266 19 H 0.075 0.925 20 C -0.043 4.043 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.278 1.278 24 H -0.296 1.296 25 H -0.270 1.270 26 C 0.134 3.866 27 H 0.004 0.996 28 C 0.141 3.859 29 O -0.180 6.180 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.052 0.948 42 H -0.004 1.004 43 H 0.067 0.933 44 H 0.252 0.748 45 H 0.069 0.931 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.540 8.092 2.669 24.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.026 3.974 3 N -0.246 5.246 4 C -0.043 4.043 5 C -0.140 4.140 6 C -0.190 4.190 7 C 0.391 3.609 8 O -0.430 6.430 9 N -0.332 5.332 10 C -0.017 4.017 11 C -0.151 4.151 12 C 0.022 3.978 13 H 0.079 0.921 14 O -0.311 6.311 15 C -0.026 4.026 16 C 0.024 3.976 17 N -0.329 5.329 18 C -0.395 4.395 19 H 0.092 0.908 20 C -0.239 4.239 21 N -0.579 5.579 22 Si 0.795 3.205 23 H -0.204 1.204 24 H -0.223 1.223 25 H -0.194 1.194 26 C 0.027 3.973 27 H 0.021 0.979 28 C 0.019 3.981 29 O -0.069 6.069 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.070 0.930 42 H 0.014 0.986 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.161 8.841 2.550 23.996 hybrid contribution 2.094 -0.936 0.474 2.342 sum -20.067 7.905 3.024 21.779 Atomic orbital electron populations 1.20794 0.76735 1.07408 1.06962 1.27884 0.98443 0.78148 0.92938 1.70420 1.01174 1.31022 1.21943 1.22313 0.94373 0.91313 0.96277 1.20428 0.91634 0.97824 1.04126 1.22374 0.82506 0.94723 1.19445 1.16742 0.85856 0.81426 0.76905 1.90841 1.25793 1.73811 1.52511 1.48185 1.11289 1.05373 1.68387 1.22330 0.83048 0.98427 0.97882 1.21848 0.99061 0.96143 0.98087 1.22502 0.94517 0.91083 0.89710 0.92084 1.87750 1.59199 1.42649 1.41510 1.23199 0.88215 0.89407 1.01791 1.21258 0.94803 0.91513 0.90062 1.44254 1.33618 1.27913 1.27132 1.19420 0.90298 1.40040 0.89780 0.90762 1.25958 0.97771 1.01418 0.98729 1.70152 1.15697 1.50108 1.21928 0.85271 0.77618 0.78309 0.79287 1.20437 1.22283 1.19434 1.21339 0.90391 0.90590 0.94990 0.97881 1.21326 0.87660 0.91504 0.97626 1.84568 1.15410 1.36756 1.70143 0.86252 0.86505 0.86364 0.89465 0.88706 0.90057 0.88528 0.86237 0.86360 0.91946 0.87244 0.92952 0.98559 0.91449 0.93924 0.91207 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 71.24 0.75 0.42 16 2 C 0.23 4.09 8.32 88.29 0.73 4.83 16 3 N -0.52 -12.23 11.26 -291.05 -3.28 -15.51 16 4 C 0.08 2.21 7.16 41.83 0.30 2.51 16 5 C -0.08 -2.06 9.96 71.24 0.71 -1.35 16 6 C -0.14 -3.88 6.78 24.05 0.16 -3.71 16 7 C 0.60 20.89 7.64 86.46 0.66 21.55 16 8 O -0.55 -22.77 14.19 -4.30 -0.06 -22.83 16 9 N -0.60 -19.66 2.99 -824.13 -2.46 -22.13 16 10 C 0.10 2.45 6.08 86.44 0.53 2.97 16 11 C -0.11 -2.89 5.82 30.65 0.18 -2.71 16 12 C 0.08 2.82 2.48 30.66 0.08 2.90 16 13 H 0.06 2.06 8.13 -2.39 -0.02 2.04 16 14 O -0.39 -14.71 10.49 -148.98 -1.56 -16.27 16 15 C 0.05 1.95 6.95 72.05 0.50 2.45 16 16 C 0.15 7.29 5.37 86.28 0.46 7.75 16 17 N -0.60 -30.71 3.02 -674.70 -2.04 -32.75 16 18 C -0.27 -14.43 8.77 84.03 0.74 -13.70 16 19 H 0.07 3.89 6.37 -2.91 -0.02 3.87 16 20 C -0.04 -2.37 5.05 84.86 0.43 -1.94 16 21 N -0.93 -55.46 11.25 21.65 0.24 -55.21 16 22 Si 0.97 44.93 29.57 68.60 2.03 46.96 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 C 0.13 5.84 3.01 44.91 0.14 5.98 16 27 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 28 C 0.14 5.66 4.53 86.11 0.39 6.05 16 29 O -0.18 -3.87 7.46 -7.08 -0.05 -3.92 16 30 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.12 0.12 8.14 -2.38 -0.02 0.10 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 2.33 6.34 -2.39 -0.02 2.32 16 36 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.12 2.42 4.29 -13.72 -0.06 2.36 16 38 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.11 3.52 8.14 -2.39 -0.02 3.51 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.07 3.59 6.44 -2.39 -0.02 3.57 16 44 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 45 H 0.07 3.30 6.81 -2.39 -0.02 3.28 16 46 H 0.08 3.16 7.33 -2.39 -0.02 3.14 16 Total: -1.00 -74.57 361.68 0.52 -74.04 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.96 Total: 13.65 kcal Atomic # 6 Polarization: 27.23 SS G_CDS: 6.75 Total: 33.98 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -7.53 Total: -125.60 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -1.68 Total: -43.03 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -74.57 0.52 -74.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074195171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.059 kcal (2) G-P(sol) polarization free energy of solvation -74.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds