Wall clock time and date at job start Tue Mar 31 2020 18:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30611 * 125.42267 * 2 1 4 4 C 1.33699 * 108.99721 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.27354 * 179.97438 * 4 3 2 6 6 C 1.36343 * 107.44953 * 359.97438 * 4 3 2 7 7 C 1.46725 * 126.64029 * 180.02562 * 6 4 3 8 8 O 1.21678 * 120.00067 * 6.36279 * 7 6 4 9 9 N 1.34779 * 119.99309 * 186.36477 * 7 6 4 10 10 C 1.46975 * 120.72765 * 356.26997 * 9 7 6 11 11 C 1.53156 * 108.44840 * 125.43616 * 10 9 7 12 12 C 1.52505 * 109.79479 * 54.52099 * 11 10 9 13 13 H 1.09003 * 108.93608 * 180.34027 * 12 11 10 14 14 O 1.42691 * 110.63200 * 61.30274 * 12 11 10 15 15 C 1.43075 * 113.87259 * 174.64388 * 14 12 11 16 16 C 1.52800 * 109.51990 * 61.50884 * 15 14 12 17 17 N 1.47170 * 108.92918 * 308.65982 * 16 15 14 18 18 C 1.36941 * 121.22486 * 230.90255 * 17 16 15 19 19 H 1.08001 * 120.00032 * 170.00216 * 18 17 16 20 20 C 1.38811 * 119.99831 * 350.00983 * 18 17 16 21 21 N 1.31615 * 119.99998 * 323.10320 * 20 18 17 22 22 Si 1.86806 * 120.00037 * 143.10848 * 20 18 17 23 23 H 1.48502 * 109.47196 * 264.99788 * 22 20 18 24 24 H 1.48500 * 109.46990 * 24.99915 * 22 20 18 25 25 H 1.48500 * 109.47062 * 144.99923 * 22 20 18 26 26 C 1.47593 * 117.55259 * 50.63462 * 17 16 15 27 27 H 1.09000 * 110.31213 * 186.93253 * 26 17 16 28 28 C 1.46800 * 120.71500 * 176.24914 * 9 7 6 29 29 O 1.33671 * 125.42220 * 180.30209 * 2 1 3 30 30 H 1.09001 * 109.46721 * 89.98190 * 1 2 3 31 31 H 1.08997 * 109.46953 * 209.97339 * 1 2 3 32 32 H 1.08996 * 109.47167 * 329.97736 * 1 2 3 33 33 H 1.09000 * 109.46863 * 270.03349 * 5 4 3 34 34 H 1.08997 * 109.47404 * 30.03661 * 5 4 3 35 35 H 1.08999 * 109.46800 * 150.04087 * 5 4 3 36 36 H 1.08998 * 109.64176 * 245.13006 * 10 9 7 37 37 H 1.09001 * 109.63620 * 5.75220 * 10 9 7 38 38 H 1.08996 * 109.41662 * 174.61563 * 11 10 9 39 39 H 1.09001 * 109.41771 * 294.41976 * 11 10 9 40 40 H 1.08993 * 109.47422 * 181.64352 * 15 14 12 41 41 H 1.09003 * 109.46833 * 301.65629 * 15 14 12 42 42 H 1.09002 * 109.53178 * 188.79573 * 16 15 14 43 43 H 1.09001 * 109.44162 * 68.46760 * 16 15 14 44 44 H 0.97008 * 120.00256 * 180.02562 * 21 20 18 45 45 H 1.08992 * 109.52436 * 114.41741 * 28 9 7 46 46 H 1.08997 * 109.52513 * 354.22170 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0643 0.0000 4 6 3.5465 0.6863 0.0006 5 6 4.7452 1.5995 0.0002 6 6 3.5708 -0.6769 0.0015 7 6 4.7636 -1.5314 0.0029 8 8 5.8680 -1.0342 0.1201 9 7 4.6358 -2.8669 -0.1257 10 6 3.3069 -3.4918 -0.1864 11 6 3.2291 -4.3426 -1.4576 12 6 4.3889 -5.3324 -1.4884 13 1 4.3234 -5.9257 -2.4004 14 8 4.3248 -6.2169 -0.3705 15 6 5.3114 -7.2528 -0.3946 16 6 6.7064 -6.6302 -0.3601 17 7 6.7984 -5.6064 -1.4133 18 6 7.8349 -5.5996 -2.3082 19 1 7.8027 -4.9454 -3.1669 20 6 8.9270 -6.4337 -2.1116 21 7 9.3717 -6.6596 -0.8937 22 14 9.7655 -7.2354 -3.5758 23 1 9.2106 -8.5978 -3.7792 24 1 9.5270 -6.4171 -4.7919 25 1 11.2253 -7.3286 -3.3203 26 6 5.7292 -4.5907 -1.4733 27 1 5.8456 -3.9709 -2.3624 28 6 5.8211 -3.7290 -0.2085 29 8 2.2818 -1.0893 -0.0057 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5142 33 1 5.0341 1.8194 -1.0275 34 1 4.4950 2.5277 0.5139 35 1 5.5736 1.1118 0.5140 36 1 3.1596 -4.1253 0.6882 37 1 2.5394 -2.7183 -0.2158 38 1 2.2861 -4.8890 -1.4707 39 1 3.2830 -3.6938 -2.3318 40 1 5.1795 -7.9005 0.4720 41 1 5.2005 -7.8391 -1.3068 42 1 7.4549 -7.4031 -0.5351 43 1 6.8741 -6.1694 0.6134 44 1 10.1351 -7.2421 -0.7563 45 1 5.8646 -4.3739 0.6691 46 1 6.7183 -3.1116 -0.2529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074195172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:52 Heat of formation + Delta-G solvation = -7.601034 kcal Electronic energy + Delta-G solvation = -30646.130125 eV Core-core repulsion = 26539.346786 eV Total energy + Delta-G solvation = -4106.783340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.60597 -40.10552 -38.62367 -36.23825 -35.19356 -34.75283 -32.97903 -31.87844 -31.62015 -29.75299 -29.43761 -28.10819 -27.09971 -24.83813 -23.99392 -22.96900 -22.14777 -21.83409 -21.43123 -20.13327 -18.58054 -17.36196 -17.20591 -16.97736 -16.29167 -15.89808 -15.51720 -15.27067 -15.03176 -14.64969 -14.33560 -14.21253 -13.96521 -13.79678 -13.47427 -13.43476 -13.29132 -13.07048 -12.92784 -12.69163 -12.44519 -12.35696 -12.23236 -12.01156 -11.52473 -11.24786 -11.17210 -11.11157 -10.83068 -10.79260 -10.52912 -10.30398 -10.24608 -10.00940 -9.77207 -9.70347 -9.18900 -8.95441 -8.57850 -8.25878 -7.04109 -6.00948 -3.16687 0.74557 2.21343 2.27561 3.08610 3.19020 3.33785 3.44327 3.45219 3.71123 4.23755 4.38353 4.47413 4.59872 4.85387 4.96835 4.99434 5.02794 5.11526 5.14225 5.27542 5.34380 5.41917 5.49267 5.57652 5.61791 5.67787 5.73584 5.79594 5.87833 5.94453 6.01553 6.04688 6.14703 6.21304 6.23187 6.26062 6.34707 6.52152 6.59828 6.79971 6.98086 7.32232 7.37469 7.56831 7.69130 7.80211 8.10413 8.16842 8.97433 9.66039 10.18010 11.08031 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.003396 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.893440 B = 8242.537844 C = 9127.786086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.203 3.797 3 N -0.489 5.489 4 C 0.077 3.923 5 C -0.082 4.082 6 C -0.107 4.107 7 C 0.600 3.400 8 O -0.517 6.517 9 N -0.592 5.592 10 C 0.097 3.903 11 C -0.120 4.120 12 C 0.081 3.919 13 H 0.055 0.945 14 O -0.387 6.387 15 C 0.042 3.958 16 C 0.124 3.876 17 N -0.584 5.584 18 C -0.264 4.264 19 H 0.078 0.922 20 C 0.009 3.991 21 N -0.879 5.879 22 Si 0.883 3.117 23 H -0.287 1.287 24 H -0.278 1.278 25 H -0.293 1.293 26 C 0.137 3.863 27 H 0.078 0.922 28 C 0.103 3.897 29 O -0.180 6.180 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.103 0.897 43 H 0.026 0.974 44 H 0.256 0.744 45 H 0.073 0.927 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.459 8.580 2.196 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.002 4.002 3 N -0.220 5.220 4 C -0.047 4.047 5 C -0.139 4.139 6 C -0.162 4.162 7 C 0.386 3.614 8 O -0.395 6.395 9 N -0.324 5.324 10 C -0.025 4.025 11 C -0.159 4.159 12 C 0.021 3.979 13 H 0.073 0.927 14 O -0.307 6.307 15 C -0.035 4.035 16 C -0.002 4.002 17 N -0.306 5.306 18 C -0.392 4.392 19 H 0.096 0.904 20 C -0.191 4.191 21 N -0.521 5.521 22 Si 0.712 3.288 23 H -0.214 1.214 24 H -0.203 1.203 25 H -0.220 1.220 26 C 0.028 3.972 27 H 0.096 0.904 28 C -0.020 4.020 29 O -0.069 6.069 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.121 0.879 43 H 0.044 0.956 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.053 9.274 2.447 20.442 hybrid contribution 0.886 -1.328 -0.881 1.824 sum -17.166 7.946 1.566 18.981 Atomic orbital electron populations 1.20354 0.81063 1.05410 1.04984 1.26672 0.96801 0.79485 0.97237 1.70328 1.01666 1.30031 1.19964 1.22033 0.93378 0.91292 0.98019 1.20409 0.92441 0.97365 1.03710 1.23115 0.82195 0.95150 1.15718 1.16532 0.85389 0.81465 0.77983 1.90851 1.24034 1.73334 1.51282 1.48199 1.08873 1.05203 1.70103 1.22205 0.83923 0.97350 0.99051 1.21782 0.98743 0.97252 0.98131 1.22228 0.94829 0.91241 0.89577 0.92684 1.87723 1.55186 1.42360 1.45412 1.23187 0.90485 0.89342 1.00518 1.21577 0.94055 0.93591 0.90953 1.44528 1.24069 1.26858 1.35195 1.19186 0.97159 1.22231 1.00575 0.90402 1.24636 0.96027 1.02364 0.96056 1.70314 1.24168 1.37409 1.20235 0.86540 0.78116 0.80445 0.83707 1.21440 1.20283 1.21958 1.21546 0.89127 0.90324 0.96240 0.90422 1.22515 0.86439 0.92339 1.00678 1.84628 1.16540 1.35699 1.70012 0.88538 0.88971 0.87951 0.90104 0.90624 0.88337 0.90283 0.88155 0.90196 0.90494 0.89924 0.93905 0.87873 0.95602 0.93388 0.90874 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.51 36.01 0.38 0.06 16 2 C 0.20 2.19 8.32 -12.80 -0.11 2.08 16 3 N -0.49 -6.44 11.26 -7.07 -0.08 -6.52 16 4 C 0.08 1.09 7.16 -82.46 -0.59 0.50 16 5 C -0.08 -1.02 9.95 36.00 0.36 -0.67 16 6 C -0.11 -1.60 6.89 -36.84 -0.25 -1.86 16 7 C 0.60 10.38 7.67 -12.83 -0.10 10.28 16 8 O -0.52 -10.23 14.20 5.21 0.07 -10.16 16 9 N -0.59 -9.96 2.96 -174.31 -0.52 -10.47 16 10 C 0.10 1.33 6.16 -3.70 -0.02 1.31 16 11 C -0.12 -1.62 5.82 -26.90 -0.16 -1.77 16 12 C 0.08 1.39 2.73 -26.89 -0.07 1.32 16 13 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 14 O -0.39 -7.00 9.59 -35.23 -0.34 -7.33 16 15 C 0.04 0.79 6.96 37.05 0.26 1.05 16 16 C 0.12 2.80 5.28 -3.78 -0.02 2.78 16 17 N -0.58 -13.93 2.75 -164.12 -0.45 -14.38 16 18 C -0.26 -7.01 9.67 -15.06 -0.15 -7.15 16 19 H 0.08 2.06 7.98 -52.49 -0.42 1.64 16 20 C 0.01 0.24 4.61 -17.43 -0.08 0.16 16 21 N -0.88 -24.59 11.42 55.49 0.63 -23.96 16 22 Si 0.88 20.95 29.68 -169.99 -5.05 15.91 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 C 0.14 2.75 3.03 -67.07 -0.20 2.55 16 27 H 0.08 1.60 7.95 -51.93 -0.41 1.19 16 28 C 0.10 2.05 5.62 -3.71 -0.02 2.02 16 29 O -0.18 -2.25 7.26 4.41 0.03 -2.22 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.36 6.36 -51.93 -0.33 1.03 16 36 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 37 H 0.10 1.24 3.79 -55.03 -0.21 1.03 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 42 H 0.10 2.59 5.61 -51.93 -0.29 2.30 16 43 H 0.03 0.62 7.19 -51.93 -0.37 0.24 16 44 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.07 1.53 6.58 -51.93 -0.34 1.19 16 46 H 0.09 2.08 7.02 -51.93 -0.36 1.72 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -31.39 360.89 -7.54 -38.94 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.51 Total: 2.09 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -0.78 Total: 12.67 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.41 Total: -55.33 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.23 Total: -19.71 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.05 Total: 15.91 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.39 -7.54 -38.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074195172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.334 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds