Wall clock time and date at job start Tue Mar 31 2020 18:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30611 * 125.42267 * 2 1 4 4 C 1.33699 * 108.99721 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.27354 * 179.97438 * 4 3 2 6 6 C 1.36343 * 107.44953 * 359.97438 * 4 3 2 7 7 C 1.46725 * 126.64029 * 180.02562 * 6 4 3 8 8 O 1.21678 * 120.00067 * 6.36279 * 7 6 4 9 9 N 1.34779 * 119.99309 * 186.36477 * 7 6 4 10 10 C 1.46975 * 120.72765 * 356.26997 * 9 7 6 11 11 C 1.53156 * 108.44840 * 125.43616 * 10 9 7 12 12 C 1.52505 * 109.79479 * 54.52099 * 11 10 9 13 13 H 1.09003 * 108.93608 * 180.34027 * 12 11 10 14 14 O 1.42691 * 110.63200 * 61.30274 * 12 11 10 15 15 C 1.43075 * 113.87259 * 174.64388 * 14 12 11 16 16 C 1.52800 * 109.51990 * 61.50884 * 15 14 12 17 17 N 1.47170 * 108.92918 * 308.65982 * 16 15 14 18 18 C 1.36941 * 121.22486 * 230.90255 * 17 16 15 19 19 H 1.08001 * 120.00032 * 170.00216 * 18 17 16 20 20 C 1.38811 * 119.99831 * 350.00983 * 18 17 16 21 21 N 1.31615 * 119.99998 * 323.10320 * 20 18 17 22 22 Si 1.86806 * 120.00037 * 143.10848 * 20 18 17 23 23 H 1.48502 * 109.47196 * 264.99788 * 22 20 18 24 24 H 1.48500 * 109.46990 * 24.99915 * 22 20 18 25 25 H 1.48500 * 109.47062 * 144.99923 * 22 20 18 26 26 C 1.47593 * 117.55259 * 50.63462 * 17 16 15 27 27 H 1.09000 * 110.31213 * 186.93253 * 26 17 16 28 28 C 1.46800 * 120.71500 * 176.24914 * 9 7 6 29 29 O 1.33671 * 125.42220 * 180.30209 * 2 1 3 30 30 H 1.09001 * 109.46721 * 89.98190 * 1 2 3 31 31 H 1.08997 * 109.46953 * 209.97339 * 1 2 3 32 32 H 1.08996 * 109.47167 * 329.97736 * 1 2 3 33 33 H 1.09000 * 109.46863 * 270.03349 * 5 4 3 34 34 H 1.08997 * 109.47404 * 30.03661 * 5 4 3 35 35 H 1.08999 * 109.46800 * 150.04087 * 5 4 3 36 36 H 1.08998 * 109.64176 * 245.13006 * 10 9 7 37 37 H 1.09001 * 109.63620 * 5.75220 * 10 9 7 38 38 H 1.08996 * 109.41662 * 174.61563 * 11 10 9 39 39 H 1.09001 * 109.41771 * 294.41976 * 11 10 9 40 40 H 1.08993 * 109.47422 * 181.64352 * 15 14 12 41 41 H 1.09003 * 109.46833 * 301.65629 * 15 14 12 42 42 H 1.09002 * 109.53178 * 188.79573 * 16 15 14 43 43 H 1.09001 * 109.44162 * 68.46760 * 16 15 14 44 44 H 0.97008 * 120.00256 * 180.02562 * 21 20 18 45 45 H 1.08992 * 109.52436 * 114.41741 * 28 9 7 46 46 H 1.08997 * 109.52513 * 354.22170 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0643 0.0000 4 6 3.5465 0.6863 0.0006 5 6 4.7452 1.5995 0.0002 6 6 3.5708 -0.6769 0.0015 7 6 4.7636 -1.5314 0.0029 8 8 5.8680 -1.0342 0.1201 9 7 4.6358 -2.8669 -0.1257 10 6 3.3069 -3.4918 -0.1864 11 6 3.2291 -4.3426 -1.4576 12 6 4.3889 -5.3324 -1.4884 13 1 4.3234 -5.9257 -2.4004 14 8 4.3248 -6.2169 -0.3705 15 6 5.3114 -7.2528 -0.3946 16 6 6.7064 -6.6302 -0.3601 17 7 6.7984 -5.6064 -1.4133 18 6 7.8349 -5.5996 -2.3082 19 1 7.8027 -4.9454 -3.1669 20 6 8.9270 -6.4337 -2.1116 21 7 9.3717 -6.6596 -0.8937 22 14 9.7655 -7.2354 -3.5758 23 1 9.2106 -8.5978 -3.7792 24 1 9.5270 -6.4171 -4.7919 25 1 11.2253 -7.3286 -3.3203 26 6 5.7292 -4.5907 -1.4733 27 1 5.8456 -3.9709 -2.3624 28 6 5.8211 -3.7290 -0.2085 29 8 2.2818 -1.0893 -0.0057 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5142 33 1 5.0341 1.8194 -1.0275 34 1 4.4950 2.5277 0.5139 35 1 5.5736 1.1118 0.5140 36 1 3.1596 -4.1253 0.6882 37 1 2.5394 -2.7183 -0.2158 38 1 2.2861 -4.8890 -1.4707 39 1 3.2830 -3.6938 -2.3318 40 1 5.1795 -7.9005 0.4720 41 1 5.2005 -7.8391 -1.3068 42 1 7.4549 -7.4031 -0.5351 43 1 6.8741 -6.1694 0.6134 44 1 10.1351 -7.2421 -0.7563 45 1 5.8646 -4.3739 0.6691 46 1 6.7183 -3.1116 -0.2529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074195172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:50 Heat of formation + Delta-G solvation = -30.483453 kcal Electronic energy + Delta-G solvation = -30647.122382 eV Core-core repulsion = 26539.346786 eV Total energy + Delta-G solvation = -4107.775596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.59154 -41.53342 -40.08553 -37.55017 -36.51557 -36.29284 -33.94686 -33.46654 -33.16113 -31.22355 -30.26817 -29.63397 -28.48441 -26.14056 -25.71779 -24.55423 -23.24410 -22.93514 -22.75133 -21.39759 -20.08201 -19.00005 -18.53049 -18.20251 -17.49679 -17.20032 -17.03315 -16.90342 -16.47555 -16.19672 -15.68974 -15.55729 -15.25002 -15.13798 -14.88484 -14.45988 -14.38283 -14.25565 -14.00880 -13.79717 -13.72896 -13.45640 -13.41515 -13.31291 -13.13290 -12.89899 -12.64516 -12.49543 -12.36215 -12.14979 -12.05920 -11.98809 -11.80768 -11.46569 -11.26630 -11.20296 -10.87830 -10.43140 -10.08579 -9.71122 -8.94093 -8.04411 -5.22683 -0.31682 1.17124 1.29172 1.43203 1.47790 1.56056 1.83214 1.93302 2.46100 2.83089 2.88384 3.04546 3.34108 3.41264 3.60252 3.77556 3.89993 4.03929 4.09522 4.16998 4.19320 4.30649 4.40184 4.46983 4.50166 4.55434 4.61342 4.63069 4.68888 4.69635 4.78059 4.82579 4.86744 4.89239 4.95601 4.99335 5.14771 5.15873 5.24570 5.28050 5.42599 5.46832 5.61936 6.12741 6.14767 6.30162 6.49963 6.81518 6.96786 7.69372 8.19690 9.03090 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.003396 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.893440 B = 8242.537844 C = 9127.786086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.228 3.772 3 N -0.515 5.515 4 C 0.080 3.920 5 C -0.082 4.082 6 C -0.134 4.134 7 C 0.598 3.402 8 O -0.555 6.555 9 N -0.593 5.593 10 C 0.097 3.903 11 C -0.112 4.112 12 C 0.086 3.914 13 H 0.056 0.944 14 O -0.382 6.382 15 C 0.054 3.946 16 C 0.129 3.871 17 N -0.601 5.601 18 C -0.275 4.275 19 H 0.072 0.928 20 C -0.038 4.038 21 N -0.912 5.912 22 Si 0.948 3.052 23 H -0.283 1.283 24 H -0.272 1.272 25 H -0.298 1.298 26 C 0.134 3.866 27 H 0.067 0.933 28 C 0.122 3.878 29 O -0.179 6.179 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.002 0.998 44 H 0.254 0.746 45 H 0.057 0.943 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.449 8.761 1.421 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.023 3.977 3 N -0.245 5.245 4 C -0.044 4.044 5 C -0.139 4.139 6 C -0.189 4.189 7 C 0.386 3.614 8 O -0.436 6.436 9 N -0.324 5.324 10 C -0.023 4.023 11 C -0.150 4.150 12 C 0.027 3.973 13 H 0.074 0.926 14 O -0.301 6.301 15 C -0.023 4.023 16 C 0.003 3.997 17 N -0.324 5.324 18 C -0.403 4.403 19 H 0.090 0.910 20 C -0.235 4.235 21 N -0.557 5.557 22 Si 0.777 3.223 23 H -0.209 1.209 24 H -0.196 1.196 25 H -0.226 1.226 26 C 0.026 3.974 27 H 0.085 0.915 28 C -0.003 4.003 29 O -0.068 6.068 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.020 0.980 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.103 9.466 1.663 24.102 hybrid contribution 2.016 -1.231 -0.602 2.438 sum -20.087 8.234 1.061 21.735 Atomic orbital electron populations 1.20790 0.76807 1.07323 1.06997 1.27930 0.98494 0.78315 0.92935 1.70412 1.01157 1.30973 1.21930 1.22311 0.94387 0.91280 0.96431 1.20415 0.91576 0.97753 1.04135 1.22443 0.82453 0.94749 1.19225 1.16806 0.85911 0.81562 0.77078 1.90824 1.25859 1.74059 1.52885 1.48180 1.09106 1.05022 1.70138 1.22424 0.82533 0.97960 0.99423 1.21811 0.98422 0.96491 0.98248 1.22251 0.94210 0.91487 0.89397 0.92643 1.87740 1.54339 1.42217 1.45845 1.23042 0.87849 0.89368 1.02057 1.21462 0.96171 0.92594 0.89443 1.44746 1.24199 1.28295 1.35131 1.19418 0.97879 1.22147 1.00863 0.91043 1.25305 0.97016 1.02983 0.98154 1.70408 1.24948 1.38349 1.21981 0.85535 0.76605 0.79444 0.80765 1.20931 1.19648 1.22561 1.21716 0.90082 0.90014 0.95633 0.91450 1.21968 0.86651 0.91768 0.99880 1.84547 1.15550 1.36284 1.70461 0.86156 0.86506 0.86529 0.89398 0.88744 0.90182 0.90149 0.85963 0.86607 0.89395 0.87127 0.93448 0.90543 0.97963 0.93668 0.92453 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 71.24 0.75 0.39 16 2 C 0.23 4.14 8.32 88.29 0.73 4.87 16 3 N -0.51 -12.36 11.26 -291.05 -3.28 -15.64 16 4 C 0.08 2.20 7.16 41.83 0.30 2.50 16 5 C -0.08 -2.04 9.95 71.24 0.71 -1.33 16 6 C -0.13 -3.91 6.89 24.05 0.17 -3.74 16 7 C 0.60 21.20 7.67 86.46 0.66 21.86 16 8 O -0.56 -23.34 14.20 -4.28 -0.06 -23.40 16 9 N -0.59 -20.13 2.96 -823.61 -2.44 -22.57 16 10 C 0.10 2.46 6.16 86.34 0.53 2.99 16 11 C -0.11 -2.64 5.82 30.48 0.18 -2.46 16 12 C 0.09 2.82 2.73 30.49 0.08 2.91 16 13 H 0.06 1.86 8.11 -2.39 -0.02 1.84 16 14 O -0.38 -13.11 9.59 -148.98 -1.43 -14.54 16 15 C 0.05 1.98 6.96 71.92 0.50 2.48 16 16 C 0.13 6.02 5.28 86.18 0.45 6.48 16 17 N -0.60 -29.64 2.75 -673.17 -1.85 -31.49 16 18 C -0.27 -15.06 9.67 84.03 0.81 -14.24 16 19 H 0.07 3.91 7.98 -2.91 -0.02 3.89 16 20 C -0.04 -2.07 4.61 84.86 0.39 -1.68 16 21 N -0.91 -53.10 11.42 21.65 0.25 -52.85 16 22 Si 0.95 44.15 29.68 68.60 2.04 46.19 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 26 C 0.13 5.51 3.03 44.95 0.14 5.64 16 27 H 0.07 2.88 7.95 -2.39 -0.02 2.86 16 28 C 0.12 5.06 5.62 86.43 0.49 5.55 16 29 O -0.18 -3.97 7.26 -7.14 -0.05 -4.03 16 30 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.08 2.32 6.36 -2.39 -0.02 2.30 16 36 H 0.08 2.05 7.95 -2.39 -0.02 2.03 16 37 H 0.12 2.62 3.79 -51.55 -0.20 2.42 16 38 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 42 H 0.08 4.00 5.61 -2.39 -0.01 3.99 16 43 H 0.00 0.12 7.19 -2.39 -0.02 0.10 16 44 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 45 H 0.06 2.54 6.58 -2.39 -0.02 2.52 16 46 H 0.05 2.65 7.02 -2.39 -0.02 2.64 16 Total: -1.00 -72.25 360.89 0.89 -71.36 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.82 Total: 14.74 kcal Atomic # 6 Polarization: 25.32 SS G_CDS: 6.89 Total: 32.22 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -7.32 Total: -122.54 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -1.54 Total: -41.96 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.04 Total: 46.19 kcal Total: -72.25 0.89 -71.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074195172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.874 kcal (2) G-P(sol) polarization free energy of solvation -72.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds