Wall clock time and date at job start Tue Mar 31 2020 19:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30257 * 125.62113 * 2 1 4 4 C 1.34478 * 108.70556 * 180.02562 * 3 2 1 5 5 C 1.34336 * 107.66627 * 0.02562 * 4 3 2 6 6 C 1.50692 * 126.44440 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47686 * 89.99470 * 6 5 4 8 8 O 1.21283 * 119.99954 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00287 * 180.02562 * 7 6 5 10 10 C 1.46833 * 120.40829 * 359.97438 * 9 7 6 11 11 C 1.53367 * 109.28894 * 232.25160 * 10 9 7 12 12 C 1.52789 * 108.82013 * 306.15051 * 11 10 9 13 13 H 1.09004 * 109.33944 * 302.83785 * 12 11 10 14 14 O 1.42597 * 111.11168 * 182.05424 * 12 11 10 15 15 C 1.43222 * 113.58973 * 175.88053 * 14 12 11 16 16 C 1.53193 * 109.35305 * 62.44251 * 15 14 12 17 17 N 1.47352 * 108.79839 * 308.55344 * 16 15 14 18 18 C 1.36942 * 121.30663 * 230.22028 * 17 16 15 19 19 H 1.07998 * 119.99443 * 152.53684 * 18 17 16 20 20 C 1.38806 * 120.00039 * 332.53920 * 18 17 16 21 21 N 1.31624 * 120.00081 * 344.72663 * 20 18 17 22 22 Si 1.86799 * 120.00114 * 164.72564 * 20 18 17 23 23 H 1.48499 * 109.47013 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47069 * 119.99804 * 22 20 18 25 25 H 1.48500 * 109.47253 * 239.99956 * 22 20 18 26 26 C 1.46877 * 117.39141 * 50.24916 * 17 16 15 27 27 H 1.08999 * 109.65365 * 67.64027 * 26 17 16 28 28 C 1.47220 * 120.46868 * 180.02562 * 9 7 6 29 29 O 1.33965 * 125.62101 * 180.34597 * 2 1 3 30 30 H 1.08997 * 109.47753 * 89.97033 * 1 2 3 31 31 H 1.08998 * 109.46772 * 209.97337 * 1 2 3 32 32 H 1.08998 * 109.46712 * 329.96712 * 1 2 3 33 33 H 1.07995 * 126.17224 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.47258 * 329.99278 * 6 5 4 35 35 H 1.09007 * 109.47016 * 209.99928 * 6 5 4 36 36 H 1.09002 * 109.50766 * 112.30142 * 10 9 7 37 37 H 1.08995 * 109.50893 * 352.20940 * 10 9 7 38 38 H 1.09003 * 109.58178 * 65.95160 * 11 10 9 39 39 H 1.09003 * 109.58274 * 186.34746 * 11 10 9 40 40 H 1.08995 * 109.80147 * 302.35737 * 15 14 12 41 41 H 1.09005 * 109.38304 * 182.25830 * 15 14 12 42 42 H 1.08997 * 109.58055 * 188.76717 * 16 15 14 43 43 H 1.08991 * 109.70119 * 68.41816 * 16 15 14 44 44 H 0.97004 * 119.99905 * 180.02562 * 21 20 18 45 45 H 1.09006 * 109.71129 * 7.09628 * 28 9 7 46 46 H 1.09003 * 109.75150 * 246.46795 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 3.5698 -0.6757 -0.0015 6 6 4.7937 -1.5549 -0.0018 7 6 5.2015 -1.8489 1.4188 8 8 4.5616 -1.3893 2.3409 9 7 6.2779 -2.6218 1.6647 10 6 7.0594 -3.1824 0.5552 11 6 7.2054 -4.6963 0.7525 12 6 7.7833 -4.9587 2.1423 13 1 8.7352 -4.4371 2.2419 14 8 7.9840 -6.3536 2.3601 15 6 8.6115 -6.6538 3.6120 16 6 7.7084 -6.1861 4.7577 17 7 7.3345 -4.7801 4.5238 18 6 7.4761 -3.8338 5.5035 19 1 7.6332 -2.7993 5.2361 20 6 7.4178 -4.2042 6.8399 21 7 6.9353 -5.3818 7.1760 22 14 8.0242 -3.0315 8.1615 23 1 8.5146 -1.7816 7.5270 24 1 6.9092 -2.7110 9.0884 25 1 9.1303 -3.6694 8.9197 26 6 6.8032 -4.4335 3.1991 27 1 5.8290 -4.9023 3.0607 28 6 6.6852 -2.9161 3.0485 29 8 2.2872 -1.0890 -0.0066 30 1 -0.3634 0.0005 -1.0276 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5143 33 1 4.4157 1.3162 -0.0003 34 1 5.6081 -1.0438 -0.5153 35 1 4.5696 -2.4894 -0.5164 36 1 8.0468 -2.7210 0.5358 37 1 6.5473 -2.9858 -0.3866 38 1 6.2282 -5.1717 0.6675 39 1 7.8774 -5.1003 -0.0047 40 1 9.5720 -6.1425 3.6756 41 1 8.7677 -7.7298 3.6896 42 1 8.2449 -6.2690 5.7028 43 1 6.8100 -6.8022 4.7922 44 1 6.8943 -5.6404 8.1100 45 1 5.9351 -2.5348 3.7414 46 1 7.6484 -2.4499 3.2560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074265948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:36 Heat of formation + Delta-G solvation = -20.247113 kcal Electronic energy + Delta-G solvation = -29900.275192 eV Core-core repulsion = 25792.943477 eV Total energy + Delta-G solvation = -4107.331715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.39662 -40.22209 -38.64033 -36.15505 -34.80734 -34.75741 -33.36432 -31.94027 -31.44510 -30.64769 -29.77186 -27.27266 -26.24571 -24.87956 -23.99763 -22.57460 -22.07862 -21.59853 -21.03893 -19.77167 -19.02000 -17.52621 -17.14140 -16.74888 -16.54960 -15.74945 -15.58374 -15.47284 -15.16301 -14.77001 -14.40573 -14.21649 -14.01203 -13.81727 -13.56704 -13.26394 -13.15141 -13.11557 -12.93089 -12.80238 -12.67736 -12.58934 -12.17620 -11.93126 -11.40077 -11.31823 -11.06143 -11.00564 -10.88622 -10.66472 -10.60724 -10.30878 -10.23016 -10.03381 -9.81301 -9.65891 -9.03402 -8.73993 -8.57482 -8.45615 -6.76905 -5.87134 -3.32934 1.32196 2.46368 2.59301 2.66358 3.11368 3.33145 3.41609 3.43144 3.93675 4.17437 4.39519 4.42447 4.51932 4.78545 4.78739 4.88011 5.04644 5.10693 5.13041 5.21900 5.28102 5.32491 5.33740 5.37969 5.45988 5.62292 5.68814 5.72696 5.82671 5.87897 5.90611 6.04537 6.09022 6.19014 6.24868 6.28422 6.40454 6.57375 6.62948 6.81413 7.08437 7.46213 7.48233 7.64484 7.68377 7.84188 8.22173 8.29285 9.06537 9.69834 10.27267 11.20961 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.003314 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.014256 B = 8445.814200 C = 9829.359325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.188 3.812 3 N -0.485 5.485 4 C -0.025 4.025 5 C -0.025 4.025 6 C -0.056 4.056 7 C 0.512 3.488 8 O -0.526 6.526 9 N -0.609 5.609 10 C 0.109 3.891 11 C -0.125 4.125 12 C 0.076 3.924 13 H 0.053 0.947 14 O -0.389 6.389 15 C 0.039 3.961 16 C 0.142 3.858 17 N -0.588 5.588 18 C -0.259 4.259 19 H 0.073 0.927 20 C 0.007 3.993 21 N -0.900 5.900 22 Si 0.904 3.096 23 H -0.276 1.276 24 H -0.289 1.289 25 H -0.288 1.288 26 C 0.137 3.863 27 H 0.037 0.963 28 C 0.124 3.876 29 O -0.196 6.196 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.182 0.818 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.255 0.745 45 H 0.102 0.898 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 5.001 -18.703 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.018 4.018 3 N -0.215 5.215 4 C -0.164 4.164 5 C -0.079 4.079 6 C -0.096 4.096 7 C 0.299 3.701 8 O -0.402 6.402 9 N -0.344 5.344 10 C -0.014 4.014 11 C -0.164 4.164 12 C 0.016 3.984 13 H 0.071 0.929 14 O -0.309 6.309 15 C -0.038 4.038 16 C 0.017 3.983 17 N -0.313 5.313 18 C -0.388 4.388 19 H 0.090 0.910 20 C -0.192 4.192 21 N -0.544 5.544 22 Si 0.733 3.267 23 H -0.201 1.201 24 H -0.215 1.215 25 H -0.215 1.215 26 C 0.029 3.971 27 H 0.054 0.946 28 C 0.003 3.997 29 O -0.083 6.083 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.199 0.801 34 H 0.144 0.856 35 H 0.132 0.868 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.046 0.954 44 H 0.065 0.935 45 H 0.120 0.880 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.776 5.625 -18.128 19.352 hybrid contribution 0.806 -0.155 1.068 1.347 sum -2.970 5.470 -17.059 18.159 Atomic orbital electron populations 1.20243 0.81401 1.05259 1.04437 1.26231 0.96419 0.78651 1.00505 1.70411 1.02052 1.30318 1.18708 1.22951 0.95122 0.92716 1.05621 1.22486 0.83173 0.94797 1.07404 1.20126 0.92134 1.00540 0.96770 1.20239 0.80283 0.79067 0.90523 1.90773 1.52431 1.51012 1.45940 1.48272 1.28268 1.49575 1.08258 1.21751 0.96618 0.93628 0.89394 1.21854 1.02527 0.94978 0.97044 1.22435 0.98260 0.83389 0.94266 0.92863 1.87756 1.81569 1.23118 1.38411 1.23348 0.95970 0.99467 0.85060 1.21438 0.96263 0.84364 0.96266 1.44046 1.72959 1.05839 1.08419 1.19172 1.44139 0.90215 0.85301 0.90986 1.25082 0.99307 0.97227 0.97614 1.70029 1.46730 1.21032 1.16634 0.86202 0.78235 0.80380 0.81866 1.20117 1.21536 1.21465 1.21299 0.95156 0.92817 0.87865 0.94579 1.21794 1.01615 0.96073 0.80213 1.84354 1.16496 1.37767 1.69695 0.89063 0.89289 0.88130 0.80083 0.85577 0.86825 0.90812 0.89578 0.90775 0.90092 0.93981 0.90042 0.88717 0.95383 0.93509 0.87986 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.00 0.38 -0.05 16 2 C 0.19 2.39 8.34 -12.95 -0.11 2.29 16 3 N -0.48 -6.91 11.29 -11.10 -0.13 -7.03 16 4 C -0.03 -0.33 11.80 -17.77 -0.21 -0.54 16 5 C -0.03 -0.33 5.88 -35.69 -0.21 -0.54 16 6 C -0.06 -0.57 4.59 -29.04 -0.13 -0.70 16 7 C 0.51 7.78 7.69 -10.99 -0.08 7.69 16 8 O -0.53 -10.70 15.44 5.56 0.09 -10.61 16 9 N -0.61 -8.92 2.99 -172.65 -0.52 -9.43 16 10 C 0.11 1.12 6.31 -3.67 -0.02 1.10 16 11 C -0.13 -1.56 5.82 -26.65 -0.16 -1.72 16 12 C 0.08 1.32 2.49 -26.63 -0.07 1.25 16 13 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 14 O -0.39 -7.42 10.47 -35.23 -0.37 -7.79 16 15 C 0.04 0.75 6.97 37.26 0.26 1.01 16 16 C 0.14 3.35 5.41 -3.48 -0.02 3.33 16 17 N -0.59 -14.44 3.04 -164.38 -0.50 -14.94 16 18 C -0.26 -6.89 8.87 -15.06 -0.13 -7.02 16 19 H 0.07 1.87 6.27 -52.49 -0.33 1.54 16 20 C 0.01 0.19 4.99 -17.43 -0.09 0.10 16 21 N -0.90 -25.77 11.16 55.49 0.62 -25.15 16 22 Si 0.90 21.54 29.58 -169.99 -5.03 16.51 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.14 2.84 3.02 -67.55 -0.20 2.63 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 C 0.12 2.37 4.49 -3.68 -0.02 2.35 16 29 O -0.20 -2.76 10.78 5.36 0.06 -2.70 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.13 0.80 7.95 -51.93 -0.41 0.39 16 35 H 0.11 0.91 7.66 -51.93 -0.40 0.51 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.57 5.90 -51.93 -0.31 0.26 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.09 2.43 6.23 -51.93 -0.32 2.11 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.10 2.30 6.81 -51.93 -0.35 1.95 16 46 H 0.07 1.41 7.37 -51.93 -0.38 1.03 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -35.57 367.37 -7.76 -43.34 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.71 Total: 1.08 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -0.81 Total: 11.19 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.52 Total: -56.55 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.23 Total: -21.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.57 -7.76 -43.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074265948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.089 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds