Wall clock time and date at job start Tue Mar 31 2020 19:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30255 * 125.62146 * 2 1 4 4 C 1.34478 * 108.70367 * 180.02562 * 3 2 1 5 5 C 1.34322 * 107.66955 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.44627 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47385 * 90.00081 * 6 5 4 8 8 O 1.21278 * 119.99810 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00226 * 180.02562 * 7 6 5 10 10 C 1.46977 * 120.71593 * 359.97438 * 9 7 6 11 11 C 1.53163 * 108.44694 * 125.45179 * 10 9 7 12 12 C 1.52501 * 109.79125 * 54.52209 * 11 10 9 13 13 H 1.09006 * 108.93826 * 180.98441 * 12 11 10 14 14 O 1.42688 * 110.62577 * 61.26980 * 12 11 10 15 15 C 1.43084 * 113.86997 * 174.64848 * 14 12 11 16 16 C 1.53226 * 109.44826 * 61.64333 * 15 14 12 17 17 N 1.47171 * 108.70358 * 308.42938 * 16 15 14 18 18 C 1.36941 * 121.22261 * 230.96242 * 17 16 15 19 19 H 1.08008 * 119.99525 * 153.51804 * 18 17 16 20 20 C 1.38801 * 120.00553 * 333.51825 * 18 17 16 21 21 N 1.31620 * 119.99764 * 343.47895 * 20 18 17 22 22 Si 1.86797 * 120.00586 * 163.47636 * 20 18 17 23 23 H 1.48497 * 109.47088 * 59.99975 * 22 20 18 24 24 H 1.48501 * 109.47593 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47030 * 300.00155 * 22 20 18 26 26 C 1.47590 * 117.55035 * 50.94177 * 17 16 15 27 27 H 1.08999 * 110.31697 * 187.69390 * 26 17 16 28 28 C 1.46786 * 120.71533 * 179.71962 * 9 7 6 29 29 O 1.33963 * 125.62012 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46710 * 269.96401 * 1 2 3 31 31 H 1.08993 * 109.46949 * 29.95825 * 1 2 3 32 32 H 1.08992 * 109.47235 * 149.96493 * 1 2 3 33 33 H 1.07998 * 126.15994 * 180.26234 * 4 3 2 34 34 H 1.09000 * 109.46871 * 210.00503 * 6 5 4 35 35 H 1.09000 * 109.46986 * 330.00052 * 6 5 4 36 36 H 1.09000 * 109.64244 * 245.14042 * 10 9 7 37 37 H 1.09005 * 109.64212 * 5.76871 * 10 9 7 38 38 H 1.08995 * 109.41605 * 174.62275 * 11 10 9 39 39 H 1.08999 * 109.41210 * 294.42111 * 11 10 9 40 40 H 1.08998 * 109.47463 * 181.63615 * 15 14 12 41 41 H 1.09003 * 109.47029 * 301.65251 * 15 14 12 42 42 H 1.09000 * 109.60098 * 68.19523 * 16 15 14 43 43 H 1.08999 * 109.59743 * 188.66566 * 16 15 14 44 44 H 0.97000 * 120.00156 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.52543 * 354.21151 * 28 9 7 46 46 H 1.09000 * 109.51923 * 114.39654 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 -0.0006 5 6 3.5698 -0.6756 -0.0004 6 6 4.7937 -1.5549 -0.0003 7 6 5.2018 -1.8478 1.4206 8 8 4.5615 -1.3882 2.3423 9 7 6.2782 -2.6205 1.6669 10 6 7.0651 -3.1860 0.5618 11 6 8.5297 -2.7803 0.7525 12 6 9.0053 -3.1999 2.1394 13 1 10.0424 -2.8894 2.2667 14 8 8.9242 -4.6164 2.2914 15 6 9.4672 -5.0984 3.5243 16 6 8.6793 -4.5034 4.6960 17 7 8.6166 -3.0425 4.5291 18 6 8.9678 -2.1960 5.5466 19 1 9.3283 -1.2029 5.3226 20 6 8.8605 -2.6143 6.8658 21 7 8.1335 -3.6701 7.1643 22 14 9.7479 -1.6790 8.2174 23 1 9.2660 -0.2746 8.2461 24 1 9.4746 -2.3234 9.5271 25 1 11.2093 -1.6955 7.9535 26 6 8.1616 -2.5234 3.2246 27 1 8.2884 -1.4417 3.1826 28 6 6.6933 -2.9108 3.0446 29 8 2.2872 -1.0890 -0.0005 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3633 0.8903 -0.5132 32 1 -0.3633 -0.8896 -0.5143 33 1 4.4156 1.3163 0.0033 34 1 4.5695 -2.4897 -0.5140 35 1 5.6080 -1.0441 -0.5142 36 1 6.9818 -4.2727 0.5713 37 1 6.6975 -2.7955 -0.3872 38 1 9.1427 -3.2697 -0.0043 39 1 8.6226 -1.6992 0.6492 40 1 9.3950 -6.1857 3.5527 41 1 10.5131 -4.8014 3.6015 42 1 7.6697 -4.9142 4.7040 43 1 9.1814 -4.7430 5.6334 44 1 8.0582 -3.9622 8.0862 45 1 6.0789 -2.3373 3.7387 46 1 6.5729 -3.9755 3.2445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074265949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:41 Heat of formation + Delta-G solvation = -20.273307 kcal Electronic energy + Delta-G solvation = -29996.544658 eV Core-core repulsion = 25889.211808 eV Total energy + Delta-G solvation = -4107.332851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.36548 -40.18784 -38.63757 -35.82636 -34.77810 -34.69480 -33.30914 -31.89369 -31.55875 -30.61868 -29.46249 -27.53790 -26.23081 -24.64780 -23.86070 -22.85712 -22.38956 -21.56390 -21.18125 -19.54041 -18.33503 -17.44394 -17.00720 -16.93989 -16.43771 -15.65815 -15.64000 -15.46172 -15.12104 -14.66499 -14.54244 -14.31833 -14.03140 -13.70218 -13.60740 -13.27088 -13.22294 -13.06656 -12.83334 -12.65445 -12.50417 -12.35121 -12.19116 -11.96880 -11.40730 -11.28671 -11.10040 -11.00915 -10.79774 -10.64996 -10.58927 -10.30233 -10.23624 -10.03972 -9.71572 -9.65200 -9.04458 -8.70048 -8.63564 -8.30946 -6.79799 -5.89194 -3.33601 1.35838 2.49557 2.64434 2.75800 3.24265 3.34305 3.39570 3.40578 3.96316 4.26594 4.38410 4.48768 4.60280 4.81297 4.89460 4.91538 5.06227 5.10465 5.15496 5.25848 5.27665 5.31532 5.37323 5.40131 5.57757 5.69197 5.72604 5.77507 5.92823 5.94935 5.99344 6.03812 6.10833 6.24927 6.28291 6.30634 6.38892 6.60487 6.70460 6.88836 7.04787 7.44328 7.63688 7.67450 7.67553 7.83906 8.26458 8.34972 9.05360 9.66866 10.23931 11.18392 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.003154 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.943202 B = 8875.568034 C =10116.355239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.186 3.814 3 N -0.484 5.484 4 C -0.026 4.026 5 C -0.024 4.024 6 C -0.055 4.055 7 C 0.509 3.491 8 O -0.532 6.532 9 N -0.604 5.604 10 C 0.110 3.890 11 C -0.123 4.123 12 C 0.080 3.920 13 H 0.053 0.947 14 O -0.387 6.387 15 C 0.040 3.960 16 C 0.137 3.863 17 N -0.584 5.584 18 C -0.257 4.257 19 H 0.069 0.931 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.907 3.093 23 H -0.281 1.281 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.134 3.866 27 H 0.074 0.926 28 C 0.106 3.894 29 O -0.197 6.197 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.182 0.818 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.029 0.971 43 H 0.096 0.904 44 H 0.257 0.743 45 H 0.089 0.911 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 0.836 -18.600 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.020 4.020 3 N -0.214 5.214 4 C -0.164 4.164 5 C -0.077 4.077 6 C -0.095 4.095 7 C 0.296 3.704 8 O -0.408 6.408 9 N -0.337 5.337 10 C -0.013 4.013 11 C -0.162 4.162 12 C 0.020 3.980 13 H 0.071 0.929 14 O -0.307 6.307 15 C -0.038 4.038 16 C 0.012 3.988 17 N -0.306 5.306 18 C -0.387 4.387 19 H 0.086 0.914 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.736 3.264 23 H -0.207 1.207 24 H -0.215 1.215 25 H -0.209 1.209 26 C 0.025 3.975 27 H 0.093 0.907 28 C -0.017 4.017 29 O -0.084 6.084 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.199 0.801 34 H 0.130 0.870 35 H 0.144 0.856 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.114 0.886 44 H 0.067 0.933 45 H 0.107 0.893 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.514 1.449 -17.998 19.195 hybrid contribution 0.981 -0.168 1.114 1.494 sum -5.532 1.280 -16.884 17.814 Atomic orbital electron populations 1.20232 0.81442 1.04832 1.04764 1.26218 0.96400 0.78700 1.00723 1.70407 1.02079 1.30310 1.18619 1.22957 0.95097 0.92765 1.05619 1.22522 0.83127 0.94846 1.07218 1.20134 0.91985 1.00406 0.97024 1.20238 0.80818 0.79030 0.90361 1.90759 1.52894 1.51190 1.45984 1.48278 1.27497 1.49376 1.08588 1.21708 0.91094 0.99647 0.88854 1.21800 0.95958 1.01471 0.96933 1.22225 0.98963 0.82631 0.94186 0.92948 1.87710 1.83175 1.20785 1.38992 1.23335 0.97057 0.97881 0.85551 1.21472 0.97669 0.83260 0.96434 1.44301 1.75237 1.01612 1.09470 1.19126 1.37065 0.97628 0.84843 0.91366 1.25068 0.98350 0.98412 0.97462 1.70006 1.39051 1.26983 1.18309 0.86303 0.79622 0.79419 0.81029 1.20725 1.21517 1.20938 1.21542 0.90864 0.97510 0.87554 0.90748 1.22273 0.97594 1.01701 0.80135 1.84344 1.16535 1.37766 1.69789 0.88908 0.88218 0.89476 0.80061 0.87048 0.85638 0.90317 0.90361 0.90273 0.90366 0.90105 0.94063 0.95333 0.88602 0.93342 0.89279 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.19 2.40 8.34 -12.95 -0.11 2.29 16 3 N -0.48 -7.07 11.29 -11.10 -0.13 -7.20 16 4 C -0.03 -0.35 11.80 -17.77 -0.21 -0.56 16 5 C -0.02 -0.32 5.88 -35.69 -0.21 -0.53 16 6 C -0.06 -0.60 4.60 -29.04 -0.13 -0.73 16 7 C 0.51 8.09 7.69 -10.99 -0.08 8.00 16 8 O -0.53 -11.21 15.45 5.56 0.09 -11.12 16 9 N -0.60 -9.34 2.97 -173.02 -0.51 -9.85 16 10 C 0.11 1.25 6.18 -3.70 -0.02 1.23 16 11 C -0.12 -1.46 5.82 -26.90 -0.16 -1.62 16 12 C 0.08 1.32 2.72 -26.88 -0.07 1.25 16 13 H 0.05 0.91 8.12 -51.93 -0.42 0.49 16 14 O -0.39 -6.85 9.59 -35.23 -0.34 -7.19 16 15 C 0.04 0.73 6.97 37.27 0.26 0.99 16 16 C 0.14 3.13 4.93 -3.56 -0.02 3.12 16 17 N -0.58 -14.05 2.71 -164.10 -0.45 -14.49 16 18 C -0.26 -6.88 9.69 -15.06 -0.15 -7.03 16 19 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 20 C 0.01 0.17 4.96 -17.43 -0.09 0.09 16 21 N -0.90 -25.51 11.14 55.49 0.62 -24.89 16 22 Si 0.91 21.43 29.58 -169.99 -5.03 16.40 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 26 C 0.13 2.70 3.01 -67.27 -0.20 2.49 16 27 H 0.07 1.54 7.99 -51.93 -0.42 1.13 16 28 C 0.11 2.12 5.61 -3.93 -0.02 2.10 16 29 O -0.20 -2.80 10.78 5.35 0.06 -2.74 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.18 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.11 0.94 7.93 -51.93 -0.41 0.53 16 35 H 0.13 0.91 7.71 -51.93 -0.40 0.51 16 36 H 0.08 0.94 7.94 -51.93 -0.41 0.53 16 37 H 0.08 0.58 5.95 -51.93 -0.31 0.27 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 43 H 0.10 2.43 6.14 -51.93 -0.32 2.11 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.09 2.11 7.00 -51.93 -0.36 1.75 16 46 H 0.07 1.49 6.54 -51.93 -0.34 1.15 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -34.75 367.30 -7.68 -42.44 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.70 Total: 2.07 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -0.83 Total: 11.05 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.47 Total: -56.43 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.19 Total: -21.06 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.75 -7.68 -42.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074265949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.164 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds