Wall clock time and date at job start Tue Mar 31 2020 19:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30255 * 125.62146 * 2 1 4 4 C 1.34478 * 108.70367 * 180.02562 * 3 2 1 5 5 C 1.34322 * 107.66955 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.44627 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47385 * 90.00081 * 6 5 4 8 8 O 1.21278 * 119.99810 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00226 * 180.02562 * 7 6 5 10 10 C 1.46977 * 120.71593 * 359.97438 * 9 7 6 11 11 C 1.53163 * 108.44694 * 125.45179 * 10 9 7 12 12 C 1.52501 * 109.79125 * 54.52209 * 11 10 9 13 13 H 1.09006 * 108.93826 * 180.98441 * 12 11 10 14 14 O 1.42688 * 110.62577 * 61.26980 * 12 11 10 15 15 C 1.43084 * 113.86997 * 174.64848 * 14 12 11 16 16 C 1.53226 * 109.44826 * 61.64333 * 15 14 12 17 17 N 1.47171 * 108.70358 * 308.42938 * 16 15 14 18 18 C 1.36941 * 121.22261 * 230.96242 * 17 16 15 19 19 H 1.08008 * 119.99525 * 153.51804 * 18 17 16 20 20 C 1.38801 * 120.00553 * 333.51825 * 18 17 16 21 21 N 1.31620 * 119.99764 * 343.47895 * 20 18 17 22 22 Si 1.86797 * 120.00586 * 163.47636 * 20 18 17 23 23 H 1.48497 * 109.47088 * 59.99975 * 22 20 18 24 24 H 1.48501 * 109.47593 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47030 * 300.00155 * 22 20 18 26 26 C 1.47590 * 117.55035 * 50.94177 * 17 16 15 27 27 H 1.08999 * 110.31697 * 187.69390 * 26 17 16 28 28 C 1.46786 * 120.71533 * 179.71962 * 9 7 6 29 29 O 1.33963 * 125.62012 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46710 * 269.96401 * 1 2 3 31 31 H 1.08993 * 109.46949 * 29.95825 * 1 2 3 32 32 H 1.08992 * 109.47235 * 149.96493 * 1 2 3 33 33 H 1.07998 * 126.15994 * 180.26234 * 4 3 2 34 34 H 1.09000 * 109.46871 * 210.00503 * 6 5 4 35 35 H 1.09000 * 109.46986 * 330.00052 * 6 5 4 36 36 H 1.09000 * 109.64244 * 245.14042 * 10 9 7 37 37 H 1.09005 * 109.64212 * 5.76871 * 10 9 7 38 38 H 1.08995 * 109.41605 * 174.62275 * 11 10 9 39 39 H 1.08999 * 109.41210 * 294.42111 * 11 10 9 40 40 H 1.08998 * 109.47463 * 181.63615 * 15 14 12 41 41 H 1.09003 * 109.47029 * 301.65251 * 15 14 12 42 42 H 1.09000 * 109.60098 * 68.19523 * 16 15 14 43 43 H 1.08999 * 109.59743 * 188.66566 * 16 15 14 44 44 H 0.97000 * 120.00156 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.52543 * 354.21151 * 28 9 7 46 46 H 1.09000 * 109.51923 * 114.39654 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 -0.0006 5 6 3.5698 -0.6756 -0.0004 6 6 4.7937 -1.5549 -0.0003 7 6 5.2018 -1.8478 1.4206 8 8 4.5615 -1.3882 2.3423 9 7 6.2782 -2.6205 1.6669 10 6 7.0651 -3.1860 0.5618 11 6 8.5297 -2.7803 0.7525 12 6 9.0053 -3.1999 2.1394 13 1 10.0424 -2.8894 2.2667 14 8 8.9242 -4.6164 2.2914 15 6 9.4672 -5.0984 3.5243 16 6 8.6793 -4.5034 4.6960 17 7 8.6166 -3.0425 4.5291 18 6 8.9678 -2.1960 5.5466 19 1 9.3283 -1.2029 5.3226 20 6 8.8605 -2.6143 6.8658 21 7 8.1335 -3.6701 7.1643 22 14 9.7479 -1.6790 8.2174 23 1 9.2660 -0.2746 8.2461 24 1 9.4746 -2.3234 9.5271 25 1 11.2093 -1.6955 7.9535 26 6 8.1616 -2.5234 3.2246 27 1 8.2884 -1.4417 3.1826 28 6 6.6933 -2.9108 3.0446 29 8 2.2872 -1.0890 -0.0005 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3633 0.8903 -0.5132 32 1 -0.3633 -0.8896 -0.5143 33 1 4.4156 1.3163 0.0033 34 1 4.5695 -2.4897 -0.5140 35 1 5.6080 -1.0441 -0.5142 36 1 6.9818 -4.2727 0.5713 37 1 6.6975 -2.7955 -0.3872 38 1 9.1427 -3.2697 -0.0043 39 1 8.6226 -1.6992 0.6492 40 1 9.3950 -6.1857 3.5527 41 1 10.5131 -4.8014 3.6015 42 1 7.6697 -4.9142 4.7040 43 1 9.1814 -4.7430 5.6334 44 1 8.0582 -3.9622 8.0862 45 1 6.0789 -2.3373 3.7387 46 1 6.5729 -3.9755 3.2445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074265949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:40 Heat of formation + Delta-G solvation = -47.113923 kcal Electronic energy + Delta-G solvation = -29997.708555 eV Core-core repulsion = 25889.211808 eV Total energy + Delta-G solvation = -4108.496747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.33305 -41.53921 -40.07305 -37.18340 -36.45898 -35.77782 -34.32080 -33.45870 -33.06063 -31.63167 -30.81238 -29.26311 -27.32950 -25.84644 -25.60076 -24.40916 -23.41391 -22.91973 -22.21902 -20.93428 -19.69764 -18.93584 -18.50395 -17.99364 -17.52878 -17.12740 -16.99310 -16.84360 -16.68426 -16.18955 -15.79109 -15.69459 -15.14701 -14.99037 -14.86570 -14.74610 -14.37046 -14.12468 -13.89687 -13.86639 -13.71518 -13.38846 -13.31288 -13.10351 -13.07636 -12.83377 -12.62825 -12.42693 -12.29840 -12.23380 -12.16061 -11.86546 -11.69335 -11.59255 -11.22344 -10.99018 -10.77303 -10.52542 -9.72939 -9.66539 -8.72964 -7.95283 -5.42873 0.38113 1.42557 1.43592 1.50821 1.53669 1.57278 1.70767 2.06049 2.44501 2.90692 3.15352 3.19457 3.43787 3.48508 3.68833 3.88759 4.01531 4.03510 4.13598 4.17195 4.21864 4.26539 4.34662 4.43897 4.54383 4.55529 4.61192 4.64316 4.66777 4.69067 4.82897 4.86698 4.91492 5.00068 5.00545 5.02433 5.07822 5.24546 5.33041 5.38531 5.45463 5.55007 5.57942 6.24262 6.35550 6.43433 6.70507 7.01745 7.11638 7.69267 8.23010 9.09364 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.003154 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.943202 B = 8875.568034 C =10116.355239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.182 3.818 3 N -0.518 5.518 4 C -0.042 4.042 5 C -0.040 4.040 6 C -0.041 4.041 7 C 0.504 3.496 8 O -0.596 6.596 9 N -0.600 5.600 10 C 0.104 3.896 11 C -0.116 4.116 12 C 0.083 3.917 13 H 0.049 0.951 14 O -0.381 6.381 15 C 0.053 3.947 16 C 0.144 3.856 17 N -0.603 5.603 18 C -0.268 4.268 19 H 0.067 0.933 20 C -0.046 4.046 21 N -0.932 5.932 22 Si 0.970 3.030 23 H -0.280 1.280 24 H -0.293 1.293 25 H -0.272 1.272 26 C 0.131 3.869 27 H 0.063 0.937 28 C 0.125 3.875 29 O -0.213 6.213 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.199 0.801 34 H 0.146 0.854 35 H 0.173 0.827 36 H 0.078 0.922 37 H 0.135 0.865 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.046 0.954 42 H -0.001 1.001 43 H 0.066 0.934 44 H 0.252 0.748 45 H 0.036 0.964 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 0.838 -22.321 22.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.025 4.025 3 N -0.248 5.248 4 C -0.180 4.180 5 C -0.093 4.093 6 C -0.080 4.080 7 C 0.294 3.706 8 O -0.477 6.477 9 N -0.333 5.333 10 C -0.016 4.016 11 C -0.154 4.154 12 C 0.024 3.976 13 H 0.067 0.933 14 O -0.300 6.300 15 C -0.025 4.025 16 C 0.019 3.981 17 N -0.327 5.327 18 C -0.397 4.397 19 H 0.084 0.916 20 C -0.242 4.242 21 N -0.577 5.577 22 Si 0.797 3.203 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.198 1.198 26 C 0.023 3.977 27 H 0.081 0.919 28 C 0.000 4.000 29 O -0.101 6.101 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.216 0.784 34 H 0.164 0.836 35 H 0.191 0.809 36 H 0.096 0.904 37 H 0.153 0.847 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.126 0.874 41 H 0.064 0.936 42 H 0.018 0.982 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.655 1.445 -21.798 22.565 hybrid contribution 0.637 -0.123 2.262 2.354 sum -5.018 1.322 -19.535 20.213 Atomic orbital electron populations 1.20523 0.78284 1.06769 1.05712 1.27266 0.98086 0.78123 0.98993 1.70413 1.02876 1.31359 1.20162 1.23379 0.95506 0.93541 1.05547 1.22998 0.83652 0.95285 1.07365 1.20293 0.92201 1.02283 0.93192 1.21219 0.79716 0.77577 0.92131 1.90740 1.54860 1.53573 1.48549 1.48289 1.28054 1.49356 1.07577 1.22126 0.90361 0.99858 0.89290 1.21879 0.96505 1.02964 0.94086 1.22318 0.98013 0.81564 0.95754 0.93295 1.87730 1.83011 1.21408 1.37840 1.23138 0.96199 0.99121 0.84006 1.21299 0.96421 0.83066 0.97350 1.44540 1.75855 1.01912 1.10346 1.19429 1.36469 0.97900 0.85949 0.91567 1.25815 0.99352 0.99543 0.99525 1.70168 1.40699 1.28652 1.18204 0.85314 0.78900 0.77953 0.78100 1.20619 1.21869 1.19783 1.21708 0.91518 0.97250 0.87190 0.91899 1.21616 0.96736 0.99169 0.82487 1.84351 1.17169 1.38463 1.70084 0.88258 0.86630 0.87172 0.78424 0.83580 0.80923 0.90364 0.84728 0.86667 0.88538 0.87414 0.93561 0.98245 0.91604 0.93919 0.94486 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.51 71.24 0.75 -0.01 16 2 C 0.18 4.53 8.34 88.34 0.74 5.27 16 3 N -0.52 -14.87 11.29 -303.84 -3.43 -18.31 16 4 C -0.04 -1.11 11.80 83.39 0.98 -0.12 16 5 C -0.04 -1.01 5.88 24.79 0.15 -0.86 16 6 C -0.04 -0.72 4.60 29.10 0.13 -0.59 16 7 C 0.50 15.42 7.69 87.66 0.67 16.10 16 8 O -0.60 -26.03 15.45 -3.02 -0.05 -26.08 16 9 N -0.60 -17.72 2.97 -819.72 -2.43 -20.15 16 10 C 0.10 1.89 6.18 86.34 0.53 2.42 16 11 C -0.12 -2.21 5.82 30.48 0.18 -2.03 16 12 C 0.08 2.59 2.72 30.50 0.08 2.67 16 13 H 0.05 1.59 8.12 -2.38 -0.02 1.57 16 14 O -0.38 -12.69 9.59 -148.98 -1.43 -14.11 16 15 C 0.05 1.93 6.97 72.06 0.50 2.43 16 16 C 0.14 6.87 4.93 86.33 0.43 7.30 16 17 N -0.60 -30.22 2.71 -673.09 -1.83 -32.04 16 18 C -0.27 -14.87 9.69 84.03 0.81 -14.05 16 19 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 20 C -0.05 -2.61 4.96 84.86 0.42 -2.19 16 21 N -0.93 -55.56 11.14 21.65 0.24 -55.32 16 22 Si 0.97 45.40 29.58 68.60 2.03 47.43 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 26 C 0.13 5.37 3.01 44.82 0.13 5.50 16 27 H 0.06 2.68 7.99 -2.39 -0.02 2.66 16 28 C 0.13 5.21 5.61 86.30 0.48 5.69 16 29 O -0.21 -5.81 10.78 -3.77 -0.04 -5.85 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.11 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.20 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.15 1.65 7.93 -2.39 -0.02 1.63 16 35 H 0.17 1.43 7.71 -2.39 -0.02 1.41 16 36 H 0.08 1.51 7.94 -2.39 -0.02 1.49 16 37 H 0.13 1.01 5.95 -2.38 -0.01 1.00 16 38 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.00 -0.03 7.17 -2.39 -0.02 -0.04 16 43 H 0.07 3.52 6.14 -2.39 -0.01 3.50 16 44 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.04 1.90 7.00 -2.39 -0.02 1.88 16 46 H 0.05 2.19 6.54 -2.39 -0.02 2.18 16 Total: -1.00 -84.55 367.30 1.06 -83.49 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.99 Total: 13.43 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 7.00 Total: 27.52 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -7.45 Total: -125.82 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -1.52 Total: -46.05 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -84.55 1.06 -83.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074265949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.373 kcal (2) G-P(sol) polarization free energy of solvation -84.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds