Wall clock time and date at job start Tue Mar 31 2020 20:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46815 * 2 1 4 4 C 1.38021 * 119.51502 * 125.25389 * 3 2 1 5 5 C 1.39928 * 119.13487 * 180.22648 * 4 3 2 6 6 C 1.48166 * 120.89429 * 179.79803 * 5 4 3 7 7 O 1.21510 * 119.99748 * 359.71714 * 6 5 4 8 8 N 1.34778 * 119.99653 * 179.71983 * 6 5 4 9 9 C 1.46500 * 119.99379 * 179.97438 * 8 6 5 10 10 H 1.09003 * 110.78101 * 31.76468 * 9 8 6 11 11 C 1.54316 * 110.72232 * 268.51936 * 9 8 6 12 12 N 1.47020 * 107.27568 * 219.44595 * 11 9 8 13 13 C 1.36938 * 125.65236 * 178.97773 * 12 11 9 14 14 H 1.07998 * 120.00058 * 359.97438 * 13 12 11 15 15 C 1.38814 * 119.99997 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00091 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99701 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47583 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.46831 * 119.99792 * 17 15 13 20 20 H 1.48497 * 109.47398 * 239.99526 * 17 15 13 21 21 C 1.47422 * 108.70191 * 358.94070 * 12 11 9 22 22 C 1.54917 * 104.83074 * 24.12901 * 21 12 11 23 23 H 1.08998 * 111.00524 * 81.06438 * 22 21 12 24 24 O 1.42898 * 111.00398 * 204.87574 * 22 21 12 25 25 C 1.42901 * 114.00403 * 268.54749 * 24 22 21 26 26 C 1.39614 * 118.21300 * 359.52222 * 5 4 3 27 27 C 1.38852 * 118.95001 * 0.25514 * 26 5 4 28 28 O 1.35685 * 119.62249 * 179.97438 * 27 26 5 29 29 N 1.31881 * 119.51141 * 304.99321 * 3 2 1 30 30 H 1.08997 * 109.47727 * 299.99999 * 1 2 3 31 31 H 1.09002 * 109.46863 * 60.00521 * 1 2 3 32 32 H 1.09006 * 109.47187 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47311 * 239.99794 * 2 1 3 34 34 H 1.09002 * 109.46863 * 119.99479 * 2 1 3 35 35 H 1.07999 * 120.43392 * 0.02689 * 4 3 2 36 36 H 0.97001 * 120.00319 * 359.97438 * 8 6 5 37 37 H 1.09000 * 109.88340 * 338.86942 * 11 9 8 38 38 H 1.09005 * 109.88355 * 99.87702 * 11 9 8 39 39 H 0.96998 * 119.99446 * 180.02562 * 16 15 13 40 40 H 1.08998 * 110.36873 * 265.28987 * 21 12 11 41 41 H 1.09005 * 110.36491 * 142.96394 * 21 12 11 42 42 H 1.09000 * 109.46919 * 300.00196 * 25 24 22 43 43 H 1.08999 * 109.47310 * 59.99456 * 25 24 22 44 44 H 1.08995 * 109.47537 * 179.97438 * 25 24 22 45 45 H 1.08002 * 120.52632 * 180.27210 * 26 5 4 46 46 H 0.96701 * 114.00433 * 89.99674 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9125 1.8308 0.9808 5 6 3.3701 3.1532 0.9760 6 6 4.3120 3.6360 2.0128 7 8 4.6935 2.8817 2.8857 8 7 4.7456 4.9119 1.9877 9 6 5.6765 5.3894 3.0132 10 1 6.3324 4.5846 3.3450 11 6 4.9095 5.9961 4.2070 12 7 5.6548 7.1848 4.6461 13 6 5.2944 8.0197 5.6700 14 1 4.3920 7.8275 6.2313 15 6 6.0890 9.1131 5.9864 16 7 7.1890 9.3471 5.3027 17 14 5.5969 10.2523 7.3826 18 1 4.3279 9.7741 7.9879 19 1 6.6653 10.2612 8.4141 20 1 5.4061 11.6274 6.8557 21 6 6.8550 7.3287 3.8022 22 6 6.5050 6.5907 2.4859 23 1 5.9043 7.2224 1.8315 24 8 7.6874 6.1449 1.8186 25 6 8.2094 7.0809 0.8734 26 6 2.9198 4.0038 -0.0354 27 6 2.0377 3.5088 -0.9867 28 8 1.5910 4.3237 -1.9754 29 7 1.6282 2.2527 -0.9402 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.2413 1.1410 1.7439 36 1 4.4413 5.5140 1.2906 37 1 3.9050 6.2824 3.8953 38 1 4.8529 5.2705 5.0185 39 1 7.7444 10.1109 5.5241 40 1 7.7146 6.8612 4.2822 41 1 7.0558 8.3818 3.6047 42 1 7.4612 7.2772 0.1053 43 1 8.4592 8.0113 1.3833 44 1 9.1060 6.6685 0.4108 45 1 3.2525 5.0304 -0.0774 46 1 2.1436 4.3188 -2.7689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081953338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:35 Heat of formation + Delta-G solvation = -52.282044 kcal Electronic energy + Delta-G solvation = -28895.477681 eV Core-core repulsion = 24786.756827 eV Total energy + Delta-G solvation = -4108.720854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10473 -39.64152 -38.20011 -37.54041 -35.98795 -34.52969 -34.00384 -32.55990 -31.72059 -29.75317 -28.86450 -27.31433 -26.17315 -25.43084 -24.49375 -23.60813 -22.60233 -20.81939 -20.57393 -19.96679 -19.03496 -17.55969 -17.31027 -16.88276 -16.43513 -15.95170 -15.76576 -15.49504 -15.04367 -14.89409 -14.74763 -14.41077 -14.34523 -14.27039 -13.97256 -13.42770 -13.22365 -12.97046 -12.57773 -12.33984 -12.30739 -12.14036 -11.93854 -11.74874 -11.55486 -11.36076 -11.35542 -11.07413 -10.88876 -10.88031 -10.36364 -10.17883 -10.15230 -9.95418 -9.86041 -9.70584 -9.19735 -9.15793 -8.81018 -8.75519 -6.96065 -5.75013 -3.18169 0.41242 0.62926 2.67752 2.98266 3.18506 3.35487 3.41501 3.43882 3.49815 4.04130 4.08587 4.32835 4.45856 4.61818 4.64553 4.83875 4.90117 4.98733 5.10602 5.16386 5.36173 5.38788 5.44333 5.45073 5.54686 5.58469 5.60343 5.61514 5.69700 5.76941 5.81699 5.90928 5.95836 5.99398 6.09898 6.12587 6.32569 6.59495 6.77024 7.10975 7.18299 7.43796 7.52382 7.54716 7.66586 7.72368 8.11909 8.21708 9.10629 9.70835 10.32622 11.29016 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.002639 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.369814 B =10609.454418 C =11212.883086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C 0.151 3.849 4 C -0.124 4.124 5 C -0.061 4.061 6 C 0.557 3.443 7 O -0.524 6.524 8 N -0.704 5.704 9 C 0.136 3.864 10 H 0.107 0.893 11 C 0.130 3.870 12 N -0.600 5.600 13 C -0.223 4.223 14 H 0.081 0.919 15 C -0.010 4.010 16 N -0.923 5.923 17 Si 0.918 3.082 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.140 3.860 22 C 0.054 3.946 23 H 0.067 0.933 24 O -0.381 6.381 25 C 0.035 3.965 26 C -0.161 4.161 27 C 0.313 3.687 28 O -0.479 6.479 29 N -0.487 5.487 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.153 0.847 36 H 0.398 0.602 37 H 0.031 0.969 38 H 0.035 0.965 39 H 0.253 0.747 40 H 0.028 0.972 41 H 0.113 0.887 42 H 0.033 0.967 43 H 0.048 0.952 44 H 0.079 0.921 45 H 0.145 0.855 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 -12.993 -16.411 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C 0.013 3.987 4 C -0.145 4.145 5 C -0.072 4.072 6 C 0.342 3.658 7 O -0.400 6.400 8 N -0.355 5.355 9 C 0.031 3.969 10 H 0.125 0.875 11 C 0.003 3.997 12 N -0.328 5.328 13 C -0.351 4.351 14 H 0.099 0.901 15 C -0.206 4.206 16 N -0.571 5.571 17 Si 0.748 3.252 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.217 1.217 21 C 0.014 3.986 22 C -0.006 4.006 23 H 0.084 0.916 24 O -0.299 6.299 25 C -0.062 4.062 26 C -0.183 4.183 27 C 0.134 3.866 28 O -0.286 6.286 29 N -0.207 5.207 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.171 0.829 36 H 0.233 0.767 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.131 0.869 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.163 0.837 46 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.821 -13.610 -15.881 22.330 hybrid contribution 0.472 1.556 0.471 1.693 sum -7.350 -12.054 -15.410 20.900 Atomic orbital electron populations 1.21689 0.93851 1.01914 1.02835 1.20546 0.97254 0.89638 1.03674 1.21006 0.92560 0.95792 0.89306 1.22162 0.97170 0.95594 0.99568 1.20368 0.97201 0.94510 0.95101 1.18057 0.80804 0.82409 0.84510 1.90797 1.57136 1.55296 1.36754 1.45917 1.47238 1.11301 1.31007 1.22225 0.89768 0.96974 0.87891 0.87481 1.21604 0.94598 0.90012 0.93499 1.44306 1.24328 1.26550 1.37603 1.19144 1.06146 1.03031 1.06738 0.90095 1.24811 0.96930 0.98944 0.99884 1.69755 1.15137 1.30317 1.41937 0.85950 0.77666 0.80373 0.81221 1.20427 1.21621 1.21688 1.22342 0.88941 1.01889 0.85422 1.24040 0.85750 0.94331 0.96431 0.91554 1.87842 1.43082 1.42732 1.56267 1.22703 0.98143 0.93880 0.91479 1.22306 0.98166 1.01582 0.96274 1.18916 0.90879 0.86501 0.90322 1.84818 1.54918 1.61344 1.27482 1.66762 1.24352 1.03655 1.25950 0.92715 0.91563 0.92104 0.89623 0.89670 0.82937 0.76689 0.95159 0.94673 0.93607 0.95440 0.86911 0.94818 0.93327 0.90281 0.83715 0.74087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.77 37.16 0.36 -0.71 16 2 C -0.07 -0.55 6.33 -27.88 -0.18 -0.72 16 3 C 0.15 1.55 6.17 -82.65 -0.51 1.04 16 4 C -0.12 -1.39 9.27 -39.03 -0.36 -1.75 16 5 C -0.06 -0.74 5.91 -104.67 -0.62 -1.36 16 6 C 0.56 8.41 7.80 -12.18 -0.09 8.32 16 7 O -0.52 -9.66 16.09 5.36 0.09 -9.57 16 8 N -0.70 -10.31 5.06 -52.87 -0.27 -10.58 16 9 C 0.14 2.48 3.05 -66.10 -0.20 2.28 16 10 H 0.11 2.15 7.55 -51.93 -0.39 1.76 16 11 C 0.13 2.76 6.99 -3.07 -0.02 2.74 16 12 N -0.60 -15.12 3.39 -170.07 -0.58 -15.70 16 13 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16 14 H 0.08 2.16 7.83 -52.49 -0.41 1.74 16 15 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 16 N -0.92 -26.17 10.09 55.49 0.56 -25.61 16 17 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.14 3.32 5.62 -2.53 -0.01 3.30 16 22 C 0.05 1.00 3.12 -24.58 -0.08 0.93 16 23 H 0.07 1.13 7.77 -51.93 -0.40 0.73 16 24 O -0.38 -6.74 10.52 -35.23 -0.37 -7.11 16 25 C 0.03 0.48 10.89 101.05 1.10 1.58 16 26 C -0.16 -1.68 9.55 -38.84 -0.37 -2.05 16 27 C 0.31 3.33 7.74 -17.16 -0.13 3.20 16 28 O -0.48 -4.27 13.56 -18.76 -0.25 -4.52 16 29 N -0.49 -5.50 9.87 -9.60 -0.09 -5.59 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.56 7.94 -51.93 -0.41 0.15 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.51 7.86 -51.93 -0.41 0.10 16 35 H 0.15 1.60 7.62 -52.49 -0.40 1.20 16 36 H 0.40 4.72 6.70 -40.82 -0.27 4.44 16 37 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.11 2.95 5.88 -51.93 -0.31 2.64 16 42 H 0.03 0.40 8.11 -51.93 -0.42 -0.03 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.15 1.21 6.53 -52.49 -0.34 0.87 16 46 H 0.40 1.51 9.06 45.56 0.41 1.92 16 LS Contribution 383.61 15.07 5.78 5.78 Total: -1.00 -33.81 383.61 -7.40 -41.20 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.87 Total: 4.86 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -1.37 Total: 10.16 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.38 Total: -57.49 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.54 Total: -21.21 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.81 -7.40 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081953338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.078 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds