Wall clock time and date at job start Tue Mar 31 2020 20:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46815 * 2 1 4 4 C 1.38021 * 119.51502 * 125.25389 * 3 2 1 5 5 C 1.39928 * 119.13487 * 180.22648 * 4 3 2 6 6 C 1.48166 * 120.89429 * 179.79803 * 5 4 3 7 7 O 1.21510 * 119.99748 * 359.71714 * 6 5 4 8 8 N 1.34778 * 119.99653 * 179.71983 * 6 5 4 9 9 C 1.46500 * 119.99379 * 179.97438 * 8 6 5 10 10 H 1.09003 * 110.78101 * 31.76468 * 9 8 6 11 11 C 1.54316 * 110.72232 * 268.51936 * 9 8 6 12 12 N 1.47020 * 107.27568 * 219.44595 * 11 9 8 13 13 C 1.36938 * 125.65236 * 178.97773 * 12 11 9 14 14 H 1.07998 * 120.00058 * 359.97438 * 13 12 11 15 15 C 1.38814 * 119.99997 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00091 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99701 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47583 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.46831 * 119.99792 * 17 15 13 20 20 H 1.48497 * 109.47398 * 239.99526 * 17 15 13 21 21 C 1.47422 * 108.70191 * 358.94070 * 12 11 9 22 22 C 1.54917 * 104.83074 * 24.12901 * 21 12 11 23 23 H 1.08998 * 111.00524 * 81.06438 * 22 21 12 24 24 O 1.42898 * 111.00398 * 204.87574 * 22 21 12 25 25 C 1.42901 * 114.00403 * 268.54749 * 24 22 21 26 26 C 1.39614 * 118.21300 * 359.52222 * 5 4 3 27 27 C 1.38852 * 118.95001 * 0.25514 * 26 5 4 28 28 O 1.35685 * 119.62249 * 179.97438 * 27 26 5 29 29 N 1.31881 * 119.51141 * 304.99321 * 3 2 1 30 30 H 1.08997 * 109.47727 * 299.99999 * 1 2 3 31 31 H 1.09002 * 109.46863 * 60.00521 * 1 2 3 32 32 H 1.09006 * 109.47187 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47311 * 239.99794 * 2 1 3 34 34 H 1.09002 * 109.46863 * 119.99479 * 2 1 3 35 35 H 1.07999 * 120.43392 * 0.02689 * 4 3 2 36 36 H 0.97001 * 120.00319 * 359.97438 * 8 6 5 37 37 H 1.09000 * 109.88340 * 338.86942 * 11 9 8 38 38 H 1.09005 * 109.88355 * 99.87702 * 11 9 8 39 39 H 0.96998 * 119.99446 * 180.02562 * 16 15 13 40 40 H 1.08998 * 110.36873 * 265.28987 * 21 12 11 41 41 H 1.09005 * 110.36491 * 142.96394 * 21 12 11 42 42 H 1.09000 * 109.46919 * 300.00196 * 25 24 22 43 43 H 1.08999 * 109.47310 * 59.99456 * 25 24 22 44 44 H 1.08995 * 109.47537 * 179.97438 * 25 24 22 45 45 H 1.08002 * 120.52632 * 180.27210 * 26 5 4 46 46 H 0.96701 * 114.00433 * 89.99674 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9125 1.8308 0.9808 5 6 3.3701 3.1532 0.9760 6 6 4.3120 3.6360 2.0128 7 8 4.6935 2.8817 2.8857 8 7 4.7456 4.9119 1.9877 9 6 5.6765 5.3894 3.0132 10 1 6.3324 4.5846 3.3450 11 6 4.9095 5.9961 4.2070 12 7 5.6548 7.1848 4.6461 13 6 5.2944 8.0197 5.6700 14 1 4.3920 7.8275 6.2313 15 6 6.0890 9.1131 5.9864 16 7 7.1890 9.3471 5.3027 17 14 5.5969 10.2523 7.3826 18 1 4.3279 9.7741 7.9879 19 1 6.6653 10.2612 8.4141 20 1 5.4061 11.6274 6.8557 21 6 6.8550 7.3287 3.8022 22 6 6.5050 6.5907 2.4859 23 1 5.9043 7.2224 1.8315 24 8 7.6874 6.1449 1.8186 25 6 8.2094 7.0809 0.8734 26 6 2.9198 4.0038 -0.0354 27 6 2.0377 3.5088 -0.9867 28 8 1.5910 4.3237 -1.9754 29 7 1.6282 2.2527 -0.9402 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.2413 1.1410 1.7439 36 1 4.4413 5.5140 1.2906 37 1 3.9050 6.2824 3.8953 38 1 4.8529 5.2705 5.0185 39 1 7.7444 10.1109 5.5241 40 1 7.7146 6.8612 4.2822 41 1 7.0558 8.3818 3.6047 42 1 7.4612 7.2772 0.1053 43 1 8.4592 8.0113 1.3833 44 1 9.1060 6.6685 0.4108 45 1 3.2525 5.0304 -0.0774 46 1 2.1436 4.3188 -2.7689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081953338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:34 Heat of formation + Delta-G solvation = -79.762413 kcal Electronic energy + Delta-G solvation = -28896.669319 eV Core-core repulsion = 24786.756827 eV Total energy + Delta-G solvation = -4109.912492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.01779 -40.88779 -39.61778 -38.27771 -37.54348 -35.86006 -35.00586 -33.77012 -33.16596 -30.74267 -30.35101 -28.95040 -27.56960 -26.59712 -25.79165 -24.65920 -23.44807 -22.43046 -21.97243 -21.32192 -19.92854 -19.10899 -18.40930 -18.16838 -17.66560 -17.20264 -16.79131 -16.68352 -16.39328 -16.10559 -15.88315 -15.76814 -15.53486 -15.31169 -14.97845 -14.95134 -14.58941 -14.18183 -13.96086 -13.74681 -13.36770 -13.21191 -13.07047 -12.96874 -12.80298 -12.77026 -12.60455 -12.38325 -12.35615 -12.02656 -11.94417 -11.93331 -11.60130 -11.51212 -11.05597 -10.82561 -10.66802 -10.53902 -10.23866 -9.92184 -8.99216 -7.82781 -5.29858 -0.49939 -0.14498 1.46878 1.47976 1.58219 1.63454 1.76974 2.41419 2.44458 2.63371 2.70502 3.26074 3.29381 3.40522 3.55965 3.78416 3.82807 3.85552 3.93746 4.01937 4.13990 4.23248 4.32595 4.39859 4.42665 4.45778 4.58676 4.65426 4.66716 4.78651 4.80919 4.83972 4.88234 4.92435 5.07533 5.19623 5.24192 5.30569 5.33984 5.43598 5.46985 5.66679 6.16786 6.27577 6.29891 6.55483 6.80704 6.94924 7.03283 7.67273 8.29141 9.18917 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.002639 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.369814 B =10609.454418 C =11212.883086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C 0.151 3.849 4 C -0.131 4.131 5 C -0.072 4.072 6 C 0.560 3.440 7 O -0.562 6.562 8 N -0.692 5.692 9 C 0.153 3.847 10 H 0.087 0.913 11 C 0.130 3.870 12 N -0.619 5.619 13 C -0.242 4.242 14 H 0.083 0.917 15 C -0.061 4.061 16 N -0.947 5.947 17 Si 0.983 3.017 18 H -0.268 1.268 19 H -0.293 1.293 20 H -0.287 1.287 21 C 0.145 3.855 22 C 0.076 3.924 23 H 0.091 0.909 24 O -0.395 6.395 25 C 0.027 3.973 26 C -0.155 4.155 27 C 0.313 3.687 28 O -0.485 6.485 29 N -0.500 5.500 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.154 0.846 36 H 0.415 0.585 37 H 0.042 0.958 38 H 0.020 0.980 39 H 0.250 0.750 40 H -0.010 1.010 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.034 0.966 44 H 0.104 0.896 45 H 0.166 0.834 46 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.556 -13.312 -18.291 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C 0.014 3.986 4 C -0.152 4.152 5 C -0.083 4.083 6 C 0.347 3.653 7 O -0.441 6.441 8 N -0.344 5.344 9 C 0.047 3.953 10 H 0.105 0.895 11 C 0.004 3.996 12 N -0.346 5.346 13 C -0.370 4.370 14 H 0.100 0.900 15 C -0.254 4.254 16 N -0.596 5.596 17 Si 0.811 3.189 18 H -0.193 1.193 19 H -0.220 1.220 20 H -0.213 1.213 21 C 0.019 3.981 22 C 0.017 3.983 23 H 0.109 0.891 24 O -0.313 6.313 25 C -0.069 4.069 26 C -0.177 4.177 27 C 0.133 3.867 28 O -0.295 6.295 29 N -0.221 5.221 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.172 0.828 36 H 0.253 0.747 37 H 0.060 0.940 38 H 0.038 0.962 39 H 0.060 0.940 40 H 0.008 0.992 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.122 0.878 45 H 0.184 0.816 46 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -9.134 -13.932 -17.825 24.398 hybrid contribution 0.879 1.624 0.986 2.093 sum -8.255 -12.308 -16.839 22.432 Atomic orbital electron populations 1.21662 0.93778 1.02834 1.01701 1.20674 0.97201 0.88184 1.05072 1.21381 0.91884 0.96838 0.88513 1.22275 0.97490 0.95383 1.00009 1.20117 0.97616 0.95382 0.95187 1.18457 0.80469 0.81861 0.84476 1.90780 1.58578 1.56240 1.38487 1.45651 1.46525 1.11694 1.30484 1.21706 0.89713 0.96049 0.87787 0.89456 1.21679 0.95169 0.88530 0.94267 1.44546 1.24983 1.27463 1.37630 1.19476 1.06357 1.03593 1.07577 0.89953 1.25638 0.97061 1.00422 1.02301 1.69987 1.15923 1.30592 1.43108 0.84946 0.77468 0.78295 0.78193 1.19250 1.22021 1.21317 1.22100 0.87591 1.00770 0.87673 1.23626 0.86423 0.93843 0.94427 0.89137 1.87836 1.42709 1.43763 1.56993 1.22976 0.99935 0.92827 0.91172 1.22427 0.97709 1.02206 0.95317 1.19037 0.90461 0.86447 0.90708 1.84774 1.55630 1.60857 1.28239 1.66855 1.24680 1.04172 1.26345 0.93645 0.92822 0.90200 0.88350 0.88127 0.82795 0.74691 0.93957 0.96203 0.94011 0.99196 0.89376 0.91990 0.94688 0.87815 0.81645 0.71485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.77 71.98 0.70 -1.16 16 2 C -0.07 -0.95 6.33 29.85 0.19 -0.76 16 3 C 0.15 2.86 6.17 42.50 0.26 3.12 16 4 C -0.13 -2.78 9.27 22.63 0.21 -2.57 16 5 C -0.07 -1.66 5.91 -19.90 -0.12 -1.78 16 6 C 0.56 16.46 7.80 86.88 0.68 17.14 16 7 O -0.56 -20.87 16.09 -3.75 -0.06 -20.93 16 8 N -0.69 -19.29 5.06 -439.49 -2.22 -21.51 16 9 C 0.15 5.59 3.05 46.18 0.14 5.73 16 10 H 0.09 3.58 7.55 -2.39 -0.02 3.57 16 11 C 0.13 5.58 6.99 86.73 0.61 6.19 16 12 N -0.62 -31.87 3.39 -691.99 -2.35 -34.22 16 13 C -0.24 -13.44 10.27 84.03 0.86 -12.58 16 14 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 15 C -0.06 -3.42 5.49 84.86 0.47 -2.96 16 16 N -0.95 -55.04 10.09 21.65 0.22 -54.82 16 17 Si 0.98 44.97 29.55 68.60 2.03 47.00 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 19 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 20 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 21 C 0.14 7.08 5.62 86.86 0.49 7.56 16 22 C 0.08 2.80 3.12 31.99 0.10 2.90 16 23 H 0.09 2.90 7.77 -2.39 -0.02 2.88 16 24 O -0.39 -13.58 10.52 -148.98 -1.57 -15.14 16 25 C 0.03 0.69 10.89 113.37 1.23 1.92 16 26 C -0.15 -2.86 9.55 22.75 0.22 -2.64 16 27 C 0.31 5.93 7.74 84.78 0.66 6.59 16 28 O -0.48 -7.33 13.56 -90.03 -1.22 -8.55 16 29 N -0.50 -10.34 9.87 -297.16 -2.93 -13.27 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.84 7.94 -2.39 -0.02 0.82 16 32 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.10 0.99 7.86 -2.39 -0.02 0.97 16 35 H 0.15 3.15 7.62 -2.91 -0.02 3.13 16 36 H 0.41 8.73 6.70 -92.71 -0.62 8.11 16 37 H 0.04 1.72 8.03 -2.39 -0.02 1.70 16 38 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 40 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 41 H 0.09 4.76 5.88 -2.38 -0.01 4.75 16 42 H 0.06 1.26 8.11 -2.39 -0.02 1.24 16 43 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.17 2.23 6.53 -2.91 -0.02 2.21 16 46 H 0.42 1.94 9.06 -74.06 -0.67 1.26 16 Total: -1.00 -74.85 383.61 -1.68 -76.53 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -0.27 Total: 18.19 kcal Atomic # 6 Polarization: 20.02 SS G_CDS: 6.70 Total: 26.72 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -7.29 Total: -123.83 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -2.85 Total: -44.62 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -74.85 -1.68 -76.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081953338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.229 kcal (2) G-P(sol) polarization free energy of solvation -74.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds