Wall clock time and date at job start Tue Mar 31 2020 20:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47110 * 2 1 4 4 C 1.38022 * 119.51072 * 125.25465 * 3 2 1 5 5 C 1.39926 * 119.13105 * 180.25082 * 4 3 2 6 6 C 1.48166 * 120.89272 * 179.77523 * 5 4 3 7 7 O 1.21510 * 120.00034 * 359.72526 * 6 5 4 8 8 N 1.34770 * 119.99868 * 179.71914 * 6 5 4 9 9 C 1.46506 * 119.99874 * 180.27688 * 8 6 5 10 10 H 1.09003 * 109.45993 * 34.75323 * 9 8 6 11 11 C 1.53033 * 109.46291 * 274.79481 * 9 8 6 12 12 C 1.53184 * 109.31648 * 178.61400 * 11 9 8 13 13 N 1.46924 * 108.77751 * 54.63535 * 12 11 9 14 14 C 1.36931 * 120.63537 * 126.41225 * 13 12 11 15 15 H 1.07996 * 120.00324 * 207.65670 * 14 13 12 16 16 C 1.38814 * 119.99785 * 27.66154 * 14 13 12 17 17 N 1.31618 * 120.00318 * 17.37477 * 16 14 13 18 18 Si 1.86806 * 120.00079 * 197.37815 * 16 14 13 19 19 H 1.48502 * 109.46952 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47060 * 119.99666 * 18 16 14 21 21 H 1.48498 * 109.46972 * 239.99854 * 18 16 14 22 22 C 1.46929 * 118.73695 * 306.39170 * 13 12 11 23 23 C 1.53041 * 109.45889 * 154.72200 * 9 8 6 24 24 H 1.09006 * 109.49581 * 61.43898 * 23 9 8 25 25 O 1.42895 * 109.49978 * 301.33818 * 23 9 8 26 26 C 1.39610 * 118.21514 * 359.50297 * 5 4 3 27 27 C 1.38850 * 118.94986 * 0.25078 * 26 5 4 28 28 O 1.35686 * 119.62140 * 179.97438 * 27 26 5 29 29 N 1.31872 * 119.51335 * 304.99799 * 3 2 1 30 30 H 1.09003 * 109.46885 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46797 * 299.99837 * 1 2 3 32 32 H 1.08995 * 109.46945 * 60.00157 * 1 2 3 33 33 H 1.09001 * 109.47380 * 239.99835 * 2 1 3 34 34 H 1.09005 * 109.46814 * 120.00403 * 2 1 3 35 35 H 1.08005 * 120.43870 * 0.02562 * 4 3 2 36 36 H 0.97002 * 120.00673 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.49625 * 298.56684 * 11 9 8 38 38 H 1.09005 * 109.50072 * 58.65934 * 11 9 8 39 39 H 1.09001 * 109.58483 * 294.84706 * 12 11 9 40 40 H 1.09003 * 109.59010 * 174.42051 * 12 11 9 41 41 H 0.96993 * 120.00209 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.58891 * 293.82495 * 22 13 12 43 43 H 1.08997 * 109.70671 * 173.46275 * 22 13 12 44 44 H 0.96704 * 113.99886 * 179.97438 * 25 23 9 45 45 H 1.08004 * 120.52357 * 180.22927 * 26 5 4 46 46 H 0.96695 * 113.99817 * 89.99954 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9127 1.8307 0.9809 5 6 3.3699 3.1531 0.9764 6 6 4.3114 3.6360 2.0135 7 8 4.6930 2.8816 2.8863 8 7 4.7447 4.9119 1.9887 9 6 5.6805 5.3877 3.0107 10 1 6.3611 4.5812 3.2836 11 6 4.8995 5.8359 4.2480 12 6 5.8827 6.3002 5.3271 13 7 6.7561 7.3351 4.7573 14 6 6.8891 8.5517 5.3716 15 1 7.1330 9.4273 4.7884 16 6 6.7104 8.6594 6.7440 17 7 6.7545 7.5829 7.4999 18 14 6.4074 10.3324 7.5179 19 1 6.4034 11.3740 6.4595 20 1 5.0941 10.3266 8.2109 21 1 7.4832 10.6263 8.4985 22 6 7.4847 7.0397 3.5161 23 6 6.4835 6.5671 2.4572 24 1 5.8057 7.3835 2.2074 25 8 7.1883 6.1557 1.2842 26 6 2.9196 4.0038 -0.0349 27 6 2.0379 3.5088 -0.9865 28 8 1.5912 4.3238 -1.9751 29 7 1.6283 2.2527 -0.9401 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.2414 1.1408 1.7440 36 1 4.4400 5.5143 1.2921 37 1 4.2366 6.6591 3.9814 38 1 4.3096 5.0017 4.6280 39 1 6.4859 5.4554 5.6597 40 1 5.3305 6.7126 6.1716 41 1 6.6300 7.6583 8.4589 42 1 8.2185 6.2552 3.7009 43 1 7.9913 7.9385 3.1645 44 1 7.7195 6.8549 0.8790 45 1 3.2516 5.0307 -0.0762 46 1 2.1440 4.3192 -2.7685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090435990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:17 Heat of formation + Delta-G solvation = -100.012153 kcal Electronic energy + Delta-G solvation = -28976.524682 eV Core-core repulsion = 24865.734095 eV Total energy + Delta-G solvation = -4110.790586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.01621 -40.87878 -39.44243 -38.27311 -36.99540 -35.94285 -35.05654 -33.83831 -33.25088 -31.71861 -30.50910 -30.12379 -27.35252 -26.07797 -24.89282 -24.02872 -23.62225 -23.08806 -21.54094 -21.06986 -19.83955 -18.92481 -18.27729 -18.20722 -17.93601 -17.07072 -16.86150 -16.71665 -16.51237 -16.10700 -15.72713 -15.69331 -15.45801 -15.03744 -14.96278 -14.96155 -14.47989 -14.16774 -13.91615 -13.64276 -13.37488 -13.28970 -13.01720 -12.96538 -12.80458 -12.76829 -12.40573 -12.36746 -12.12242 -12.07104 -11.95437 -11.90231 -11.57928 -11.27892 -11.07219 -11.05097 -10.59854 -10.54995 -10.15733 -9.92868 -8.78358 -7.91465 -5.38544 -0.49101 -0.15121 1.47086 1.49578 1.59610 1.67009 1.86585 2.42480 2.48337 2.63712 3.08278 3.25038 3.31778 3.46037 3.60261 3.82560 3.82749 3.85656 4.02110 4.13600 4.19104 4.23527 4.36815 4.38766 4.44309 4.50284 4.61974 4.67988 4.78925 4.81423 4.88031 4.92896 5.00115 5.06512 5.10873 5.18503 5.28841 5.33577 5.36955 5.46069 5.59398 5.65149 6.32837 6.36058 6.54872 6.79860 6.87014 7.02098 7.08613 7.76961 8.29210 9.16089 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.002473 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.856497 B =11319.557872 C =11699.622440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C 0.151 3.849 4 C -0.134 4.134 5 C -0.073 4.073 6 C 0.555 3.445 7 O -0.568 6.568 8 N -0.692 5.692 9 C 0.169 3.831 10 H 0.061 0.939 11 C -0.130 4.130 12 C 0.180 3.820 13 N -0.604 5.604 14 C -0.263 4.263 15 H 0.078 0.922 16 C -0.051 4.051 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.261 1.261 20 H -0.292 1.292 21 H -0.295 1.295 22 C 0.117 3.883 23 C 0.102 3.898 24 H 0.076 0.924 25 O -0.570 6.570 26 C -0.154 4.154 27 C 0.313 3.687 28 O -0.484 6.484 29 N -0.500 5.500 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.152 0.848 36 H 0.413 0.587 37 H 0.071 0.929 38 H 0.058 0.942 39 H -0.007 1.007 40 H 0.063 0.937 41 H 0.251 0.749 42 H 0.013 0.987 43 H 0.077 0.923 44 H 0.397 0.603 45 H 0.166 0.834 46 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.329 -9.029 -21.037 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C 0.014 3.986 4 C -0.154 4.154 5 C -0.084 4.084 6 C 0.342 3.658 7 O -0.448 6.448 8 N -0.342 5.342 9 C 0.065 3.935 10 H 0.079 0.921 11 C -0.171 4.171 12 C 0.053 3.947 13 N -0.328 5.328 14 C -0.393 4.393 15 H 0.096 0.904 16 C -0.247 4.247 17 N -0.582 5.582 18 Si 0.797 3.203 19 H -0.185 1.185 20 H -0.219 1.219 21 H -0.222 1.222 22 C -0.009 4.009 23 C 0.041 3.959 24 H 0.094 0.906 25 O -0.378 6.378 26 C -0.176 4.176 27 C 0.133 3.867 28 O -0.294 6.294 29 N -0.221 5.221 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.169 0.831 36 H 0.251 0.749 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.011 0.989 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.031 0.969 43 H 0.096 0.904 44 H 0.248 0.752 45 H 0.184 0.816 46 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -10.330 -10.181 -20.432 25.057 hybrid contribution 1.209 1.753 0.978 2.343 sum -9.122 -8.428 -19.454 23.080 Atomic orbital electron populations 1.21657 0.93695 1.02850 1.01718 1.20674 0.97272 0.88197 1.05013 1.21366 0.91888 0.96841 0.88516 1.22270 0.97641 0.95476 1.00060 1.20184 0.97551 0.95350 0.95296 1.18472 0.80714 0.82171 0.84483 1.90780 1.58927 1.56388 1.38686 1.45757 1.46145 1.11371 1.30945 1.20738 0.89750 0.95690 0.87366 0.92095 1.22341 0.98774 1.00327 0.95630 1.20550 0.90602 0.89470 0.94068 1.44268 1.49485 1.13514 1.25559 1.19592 1.43510 0.86188 0.89970 0.90439 1.25873 1.01613 1.00277 0.96934 1.70202 1.54125 1.29572 1.04323 0.85183 0.76778 0.80051 0.78263 1.18475 1.21889 1.22198 1.21696 0.93205 0.98938 0.87105 1.22305 0.93433 0.94565 0.85580 0.90597 1.86448 1.66533 1.43259 1.41532 1.22415 0.97651 1.02214 0.95273 1.19041 0.90464 0.86447 0.90706 1.84768 1.55605 1.60828 1.28238 1.66851 1.24743 1.04181 1.26299 0.90185 0.93651 0.92757 0.88355 0.88252 0.83055 0.74896 0.91040 0.92346 0.98915 0.91832 0.94035 0.96941 0.90437 0.75240 0.81622 0.71485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.77 71.98 0.70 -1.20 16 2 C -0.07 -1.00 6.33 29.85 0.19 -0.81 16 3 C 0.15 2.97 6.17 42.50 0.26 3.23 16 4 C -0.13 -2.98 9.27 22.63 0.21 -2.77 16 5 C -0.07 -1.74 5.91 -19.90 -0.12 -1.86 16 6 C 0.55 16.77 7.76 86.88 0.67 17.44 16 7 O -0.57 -21.87 16.10 -3.75 -0.06 -21.93 16 8 N -0.69 -19.02 4.88 -444.98 -2.17 -21.19 16 9 C 0.17 5.80 2.12 45.02 0.10 5.89 16 10 H 0.06 2.49 7.57 -2.39 -0.02 2.47 16 11 C -0.13 -5.05 5.65 30.67 0.17 -4.87 16 12 C 0.18 8.74 5.31 86.36 0.46 9.20 16 13 N -0.60 -29.07 2.99 -699.10 -2.09 -31.16 16 14 C -0.26 -13.72 9.59 84.04 0.81 -12.92 16 15 H 0.08 3.83 7.89 -2.91 -0.02 3.81 16 16 C -0.05 -2.80 4.91 84.86 0.42 -2.38 16 17 N -0.94 -55.01 11.19 21.65 0.24 -54.76 16 18 Si 0.97 43.50 29.59 68.60 2.03 45.53 16 19 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 C 0.12 4.50 6.14 86.36 0.53 5.03 16 23 C 0.10 3.11 3.14 30.67 0.10 3.21 16 24 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 25 O -0.57 -14.32 13.16 -148.98 -1.96 -16.28 16 26 C -0.15 -2.90 9.55 22.75 0.22 -2.68 16 27 C 0.31 6.01 7.74 84.78 0.66 6.67 16 28 O -0.48 -7.29 13.56 -90.05 -1.22 -8.51 16 29 N -0.50 -10.55 9.87 -297.16 -2.93 -13.49 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.86 7.94 -2.39 -0.02 0.84 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.06 7.86 -2.38 -0.02 1.04 16 35 H 0.15 3.31 7.62 -2.91 -0.02 3.29 16 36 H 0.41 8.58 6.74 -92.71 -0.62 7.96 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 39 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.06 3.48 6.04 -2.39 -0.01 3.46 16 41 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.08 2.70 7.94 -2.39 -0.02 2.68 16 44 H 0.40 6.29 9.08 -74.05 -0.67 5.62 16 45 H 0.17 2.28 6.53 -2.91 -0.02 2.26 16 46 H 0.42 1.93 9.06 -74.06 -0.67 1.26 16 Total: -1.00 -74.51 379.74 -3.72 -78.23 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -0.93 Total: 22.40 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 5.37 Total: 21.17 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -6.95 Total: -120.60 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -3.24 Total: -46.72 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -74.51 -3.72 -78.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090435990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.782 kcal (2) G-P(sol) polarization free energy of solvation -74.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds