Wall clock time and date at job start Tue Mar 31 2020 20:08:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50697 * 109.47110 * 2 1
4 4 C 1.38022 * 119.51072 * 125.25465 * 3 2 1
5 5 C 1.39926 * 119.13105 * 180.25082 * 4 3 2
6 6 C 1.48166 * 120.89272 * 179.77523 * 5 4 3
7 7 O 1.21510 * 120.00034 * 359.72526 * 6 5 4
8 8 N 1.34770 * 119.99868 * 179.71914 * 6 5 4
9 9 C 1.46506 * 119.99874 * 180.27688 * 8 6 5
10 10 H 1.09003 * 109.45993 * 34.75323 * 9 8 6
11 11 C 1.53033 * 109.46291 * 274.79481 * 9 8 6
12 12 C 1.53184 * 109.31648 * 178.61400 * 11 9 8
13 13 N 1.46924 * 108.77751 * 54.63535 * 12 11 9
14 14 C 1.36931 * 120.63537 * 126.41225 * 13 12 11
15 15 H 1.07996 * 120.00324 * 207.65670 * 14 13 12
16 16 C 1.38814 * 119.99785 * 27.66154 * 14 13 12
17 17 N 1.31618 * 120.00318 * 17.37477 * 16 14 13
18 18 Si 1.86806 * 120.00079 * 197.37815 * 16 14 13
19 19 H 1.48502 * 109.46952 * 0.02562 * 18 16 14
20 20 H 1.48494 * 109.47060 * 119.99666 * 18 16 14
21 21 H 1.48498 * 109.46972 * 239.99854 * 18 16 14
22 22 C 1.46929 * 118.73695 * 306.39170 * 13 12 11
23 23 C 1.53041 * 109.45889 * 154.72200 * 9 8 6
24 24 H 1.09006 * 109.49581 * 61.43898 * 23 9 8
25 25 O 1.42895 * 109.49978 * 301.33818 * 23 9 8
26 26 C 1.39610 * 118.21514 * 359.50297 * 5 4 3
27 27 C 1.38850 * 118.94986 * 0.25078 * 26 5 4
28 28 O 1.35686 * 119.62140 * 179.97438 * 27 26 5
29 29 N 1.31872 * 119.51335 * 304.99799 * 3 2 1
30 30 H 1.09003 * 109.46885 * 179.97438 * 1 2 3
31 31 H 1.08994 * 109.46797 * 299.99837 * 1 2 3
32 32 H 1.08995 * 109.46945 * 60.00157 * 1 2 3
33 33 H 1.09001 * 109.47380 * 239.99835 * 2 1 3
34 34 H 1.09005 * 109.46814 * 120.00403 * 2 1 3
35 35 H 1.08005 * 120.43870 * 0.02562 * 4 3 2
36 36 H 0.97002 * 120.00673 * 0.02562 * 8 6 5
37 37 H 1.09000 * 109.49625 * 298.56684 * 11 9 8
38 38 H 1.09005 * 109.50072 * 58.65934 * 11 9 8
39 39 H 1.09001 * 109.58483 * 294.84706 * 12 11 9
40 40 H 1.09003 * 109.59010 * 174.42051 * 12 11 9
41 41 H 0.96993 * 120.00209 * 179.97438 * 17 16 14
42 42 H 1.09000 * 109.58891 * 293.82495 * 22 13 12
43 43 H 1.08997 * 109.70671 * 173.46275 * 22 13 12
44 44 H 0.96704 * 113.99886 * 179.97438 * 25 23 9
45 45 H 1.08004 * 120.52357 * 180.22927 * 26 5 4
46 46 H 0.96695 * 113.99817 * 89.99954 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 6 2.9127 1.8307 0.9809
5 6 3.3699 3.1531 0.9764
6 6 4.3114 3.6360 2.0135
7 8 4.6930 2.8816 2.8863
8 7 4.7447 4.9119 1.9887
9 6 5.6805 5.3877 3.0107
10 1 6.3611 4.5812 3.2836
11 6 4.8995 5.8359 4.2480
12 6 5.8827 6.3002 5.3271
13 7 6.7561 7.3351 4.7573
14 6 6.8891 8.5517 5.3716
15 1 7.1330 9.4273 4.7884
16 6 6.7104 8.6594 6.7440
17 7 6.7545 7.5829 7.4999
18 14 6.4074 10.3324 7.5179
19 1 6.4034 11.3740 6.4595
20 1 5.0941 10.3266 8.2109
21 1 7.4832 10.6263 8.4985
22 6 7.4847 7.0397 3.5161
23 6 6.4835 6.5671 2.4572
24 1 5.8057 7.3835 2.2074
25 8 7.1883 6.1557 1.2842
26 6 2.9196 4.0038 -0.0349
27 6 2.0379 3.5088 -0.9865
28 8 1.5912 4.3238 -1.9751
29 7 1.6283 2.2527 -0.9401
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 1.8934 -0.5139 -0.8900
34 1 1.8933 -0.5139 0.8900
35 1 3.2414 1.1408 1.7440
36 1 4.4400 5.5143 1.2921
37 1 4.2366 6.6591 3.9814
38 1 4.3096 5.0017 4.6280
39 1 6.4859 5.4554 5.6597
40 1 5.3305 6.7126 6.1716
41 1 6.6300 7.6583 8.4589
42 1 8.2185 6.2552 3.7009
43 1 7.9913 7.9385 3.1645
44 1 7.7195 6.8549 0.8790
45 1 3.2516 5.0307 -0.0762
46 1 2.1440 4.3192 -2.7685
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001090435990.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:08:17
Heat of formation + Delta-G solvation = -100.012153 kcal
Electronic energy + Delta-G solvation = -28976.524682 eV
Core-core repulsion = 24865.734095 eV
Total energy + Delta-G solvation = -4110.790586 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.01621 -40.87878 -39.44243 -38.27311 -36.99540 -35.94285 -35.05654 -33.83831
-33.25088 -31.71861 -30.50910 -30.12379 -27.35252 -26.07797 -24.89282 -24.02872
-23.62225 -23.08806 -21.54094 -21.06986 -19.83955 -18.92481 -18.27729 -18.20722
-17.93601 -17.07072 -16.86150 -16.71665 -16.51237 -16.10700 -15.72713 -15.69331
-15.45801 -15.03744 -14.96278 -14.96155 -14.47989 -14.16774 -13.91615 -13.64276
-13.37488 -13.28970 -13.01720 -12.96538 -12.80458 -12.76829 -12.40573 -12.36746
-12.12242 -12.07104 -11.95437 -11.90231 -11.57928 -11.27892 -11.07219 -11.05097
-10.59854 -10.54995 -10.15733 -9.92868 -8.78358 -7.91465 -5.38544 -0.49101
-0.15121 1.47086 1.49578 1.59610 1.67009 1.86585 2.42480 2.48337
2.63712 3.08278 3.25038 3.31778 3.46037 3.60261 3.82560 3.82749
3.85656 4.02110 4.13600 4.19104 4.23527 4.36815 4.38766 4.44309
4.50284 4.61974 4.67988 4.78925 4.81423 4.88031 4.92896 5.00115
5.06512 5.10873 5.18503 5.28841 5.33577 5.36955 5.46069 5.59398
5.65149 6.32837 6.36058 6.54872 6.79860 6.87014 7.02098 7.08613
7.76961 8.29210 9.16089
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.019241 B = 0.002473 C = 0.002393
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1454.856497 B =11319.557872 C =11699.622440
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.074 4.074
3 C 0.151 3.849
4 C -0.134 4.134
5 C -0.073 4.073
6 C 0.555 3.445
7 O -0.568 6.568
8 N -0.692 5.692
9 C 0.169 3.831
10 H 0.061 0.939
11 C -0.130 4.130
12 C 0.180 3.820
13 N -0.604 5.604
14 C -0.263 4.263
15 H 0.078 0.922
16 C -0.051 4.051
17 N -0.936 5.936
18 Si 0.969 3.031
19 H -0.261 1.261
20 H -0.292 1.292
21 H -0.295 1.295
22 C 0.117 3.883
23 C 0.102 3.898
24 H 0.076 0.924
25 O -0.570 6.570
26 C -0.154 4.154
27 C 0.313 3.687
28 O -0.484 6.484
29 N -0.500 5.500
30 H 0.079 0.921
31 H 0.044 0.956
32 H 0.053 0.947
33 H 0.098 0.902
34 H 0.099 0.901
35 H 0.152 0.848
36 H 0.413 0.587
37 H 0.071 0.929
38 H 0.058 0.942
39 H -0.007 1.007
40 H 0.063 0.937
41 H 0.251 0.749
42 H 0.013 0.987
43 H 0.077 0.923
44 H 0.397 0.603
45 H 0.166 0.834
46 H 0.423 0.577
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.329 -9.029 -21.037 24.720
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.112 4.112
3 C 0.014 3.986
4 C -0.154 4.154
5 C -0.084 4.084
6 C 0.342 3.658
7 O -0.448 6.448
8 N -0.342 5.342
9 C 0.065 3.935
10 H 0.079 0.921
11 C -0.171 4.171
12 C 0.053 3.947
13 N -0.328 5.328
14 C -0.393 4.393
15 H 0.096 0.904
16 C -0.247 4.247
17 N -0.582 5.582
18 Si 0.797 3.203
19 H -0.185 1.185
20 H -0.219 1.219
21 H -0.222 1.222
22 C -0.009 4.009
23 C 0.041 3.959
24 H 0.094 0.906
25 O -0.378 6.378
26 C -0.176 4.176
27 C 0.133 3.867
28 O -0.294 6.294
29 N -0.221 5.221
30 H 0.098 0.902
31 H 0.063 0.937
32 H 0.072 0.928
33 H 0.116 0.884
34 H 0.117 0.883
35 H 0.169 0.831
36 H 0.251 0.749
37 H 0.090 0.910
38 H 0.077 0.923
39 H 0.011 0.989
40 H 0.082 0.918
41 H 0.060 0.940
42 H 0.031 0.969
43 H 0.096 0.904
44 H 0.248 0.752
45 H 0.184 0.816
46 H 0.285 0.715
Dipole moment (debyes) X Y Z Total
from point charges -10.330 -10.181 -20.432 25.057
hybrid contribution 1.209 1.753 0.978 2.343
sum -9.122 -8.428 -19.454 23.080
Atomic orbital electron populations
1.21657 0.93695 1.02850 1.01718 1.20674 0.97272 0.88197 1.05013
1.21366 0.91888 0.96841 0.88516 1.22270 0.97641 0.95476 1.00060
1.20184 0.97551 0.95350 0.95296 1.18472 0.80714 0.82171 0.84483
1.90780 1.58927 1.56388 1.38686 1.45757 1.46145 1.11371 1.30945
1.20738 0.89750 0.95690 0.87366 0.92095 1.22341 0.98774 1.00327
0.95630 1.20550 0.90602 0.89470 0.94068 1.44268 1.49485 1.13514
1.25559 1.19592 1.43510 0.86188 0.89970 0.90439 1.25873 1.01613
1.00277 0.96934 1.70202 1.54125 1.29572 1.04323 0.85183 0.76778
0.80051 0.78263 1.18475 1.21889 1.22198 1.21696 0.93205 0.98938
0.87105 1.22305 0.93433 0.94565 0.85580 0.90597 1.86448 1.66533
1.43259 1.41532 1.22415 0.97651 1.02214 0.95273 1.19041 0.90464
0.86447 0.90706 1.84768 1.55605 1.60828 1.28238 1.66851 1.24743
1.04181 1.26299 0.90185 0.93651 0.92757 0.88355 0.88252 0.83055
0.74896 0.91040 0.92346 0.98915 0.91832 0.94035 0.96941 0.90437
0.75240 0.81622 0.71485
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.91 9.77 71.98 0.70 -1.20 16
2 C -0.07 -1.00 6.33 29.85 0.19 -0.81 16
3 C 0.15 2.97 6.17 42.50 0.26 3.23 16
4 C -0.13 -2.98 9.27 22.63 0.21 -2.77 16
5 C -0.07 -1.74 5.91 -19.90 -0.12 -1.86 16
6 C 0.55 16.77 7.76 86.88 0.67 17.44 16
7 O -0.57 -21.87 16.10 -3.75 -0.06 -21.93 16
8 N -0.69 -19.02 4.88 -444.98 -2.17 -21.19 16
9 C 0.17 5.80 2.12 45.02 0.10 5.89 16
10 H 0.06 2.49 7.57 -2.39 -0.02 2.47 16
11 C -0.13 -5.05 5.65 30.67 0.17 -4.87 16
12 C 0.18 8.74 5.31 86.36 0.46 9.20 16
13 N -0.60 -29.07 2.99 -699.10 -2.09 -31.16 16
14 C -0.26 -13.72 9.59 84.04 0.81 -12.92 16
15 H 0.08 3.83 7.89 -2.91 -0.02 3.81 16
16 C -0.05 -2.80 4.91 84.86 0.42 -2.38 16
17 N -0.94 -55.01 11.19 21.65 0.24 -54.76 16
18 Si 0.97 43.50 29.59 68.60 2.03 45.53 16
19 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16
20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16
21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16
22 C 0.12 4.50 6.14 86.36 0.53 5.03 16
23 C 0.10 3.11 3.14 30.67 0.10 3.21 16
24 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16
25 O -0.57 -14.32 13.16 -148.98 -1.96 -16.28 16
26 C -0.15 -2.90 9.55 22.75 0.22 -2.68 16
27 C 0.31 6.01 7.74 84.78 0.66 6.67 16
28 O -0.48 -7.29 13.56 -90.05 -1.22 -8.51 16
29 N -0.50 -10.55 9.87 -297.16 -2.93 -13.49 16
30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16
31 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16
32 H 0.05 0.86 7.94 -2.39 -0.02 0.84 16
33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16
34 H 0.10 1.06 7.86 -2.38 -0.02 1.04 16
35 H 0.15 3.31 7.62 -2.91 -0.02 3.29 16
36 H 0.41 8.58 6.74 -92.71 -0.62 7.96 16
37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16
38 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16
39 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16
40 H 0.06 3.48 6.04 -2.39 -0.01 3.46 16
41 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16
42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16
43 H 0.08 2.70 7.94 -2.39 -0.02 2.68 16
44 H 0.40 6.29 9.08 -74.05 -0.67 5.62 16
45 H 0.17 2.28 6.53 -2.91 -0.02 2.26 16
46 H 0.42 1.93 9.06 -74.06 -0.67 1.26 16
Total: -1.00 -74.51 379.74 -3.72 -78.23
By element:
Atomic # 1 Polarization: 23.32 SS G_CDS: -0.93 Total: 22.40 kcal
Atomic # 6 Polarization: 15.80 SS G_CDS: 5.37 Total: 21.17 kcal
Atomic # 7 Polarization: -113.65 SS G_CDS: -6.95 Total: -120.60 kcal
Atomic # 8 Polarization: -43.48 SS G_CDS: -3.24 Total: -46.72 kcal
Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal
Total: -74.51 -3.72 -78.23 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001090435990.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.782 kcal
(2) G-P(sol) polarization free energy of solvation -74.508 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.290 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.722 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.231 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.012 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds