Wall clock time and date at job start Tue Mar 31 2020 20:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47343 * 2 1 4 4 C 1.38016 * 119.51865 * 124.99931 * 3 2 1 5 5 C 1.39925 * 119.13518 * 179.97438 * 4 3 2 6 6 C 1.48158 * 120.88885 * 179.97438 * 5 4 3 7 7 O 1.21517 * 120.00590 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99994 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00361 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46396 * 35.02695 * 9 8 6 11 11 C 1.53044 * 109.46189 * 275.06459 * 9 8 6 12 12 C 1.52755 * 109.38132 * 301.22024 * 11 9 8 13 13 N 1.46923 * 109.00900 * 305.58408 * 12 11 9 14 14 C 1.36943 * 120.62930 * 233.58508 * 13 12 11 15 15 H 1.08000 * 119.99888 * 152.17192 * 14 13 12 16 16 C 1.38811 * 119.99955 * 332.17173 * 14 13 12 17 17 N 1.31614 * 120.00254 * 342.76805 * 16 14 13 18 18 Si 1.86801 * 119.99678 * 162.77313 * 16 14 13 19 19 H 1.48501 * 109.46669 * 179.97438 * 18 16 14 20 20 H 1.48497 * 109.46948 * 299.99298 * 18 16 14 21 21 H 1.48498 * 109.47140 * 59.99949 * 18 16 14 22 22 C 1.46927 * 118.73893 * 53.31139 * 13 12 11 23 23 C 1.53046 * 109.46379 * 154.99790 * 9 8 6 24 24 H 1.08999 * 109.49861 * 178.60651 * 23 9 8 25 25 O 1.42898 * 109.49343 * 298.70602 * 23 9 8 26 26 C 1.39611 * 118.21738 * 0.24877 * 5 4 3 27 27 C 1.38854 * 118.94733 * 359.50452 * 26 5 4 28 28 O 1.35678 * 119.62146 * 180.23085 * 27 26 5 29 29 N 1.31884 * 119.50976 * 304.97722 * 3 2 1 30 30 H 1.09005 * 109.47269 * 60.00212 * 1 2 3 31 31 H 1.08997 * 109.47264 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47245 * 300.00680 * 1 2 3 33 33 H 1.09000 * 109.47448 * 239.99794 * 2 1 3 34 34 H 1.09001 * 109.47479 * 119.99327 * 2 1 3 35 35 H 1.08004 * 120.42728 * 359.95672 * 4 3 2 36 36 H 0.97006 * 119.99741 * 359.97438 * 8 6 5 37 37 H 1.09007 * 109.49256 * 61.29397 * 11 9 8 38 38 H 1.09002 * 109.49531 * 181.39096 * 11 9 8 39 39 H 1.09005 * 109.50719 * 185.70148 * 12 11 9 40 40 H 1.09006 * 109.43430 * 65.42411 * 12 11 9 41 41 H 0.96995 * 120.00322 * 180.02562 * 17 16 14 42 42 H 1.09004 * 109.58525 * 66.43417 * 22 13 12 43 43 H 1.08995 * 109.58430 * 186.71314 * 22 13 12 44 44 H 0.96702 * 113.99942 * 179.83960 * 25 23 9 45 45 H 1.08000 * 120.52493 * 179.75535 * 26 5 4 46 46 H 0.96713 * 113.99823 * 270.27822 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9085 1.8323 0.9838 5 6 3.3703 3.1531 0.9758 6 6 4.3110 3.6362 2.0135 7 8 4.6915 2.8823 2.8872 8 7 4.7441 4.9123 1.9889 9 6 5.6738 5.3903 3.0152 10 1 6.3563 4.5860 3.2899 11 6 4.8861 5.8341 4.2500 12 6 3.9081 6.9397 3.8570 13 7 4.6494 8.0207 3.1931 14 6 4.5443 9.3125 3.6351 15 1 5.3622 10.0021 3.4872 16 6 3.3865 9.7357 4.2733 17 7 2.2791 9.0333 4.1615 18 14 3.4002 11.3022 5.2908 19 1 2.0493 11.5326 5.8628 20 1 4.3881 11.1690 6.3914 21 1 3.7737 12.4506 4.4265 22 6 5.5103 7.6883 2.0499 23 6 6.4747 6.5734 2.4666 24 1 7.1491 6.9452 3.2380 25 8 7.2336 6.1505 1.3321 26 6 2.9163 4.0051 -0.0327 27 6 2.0387 3.5086 -0.9874 28 8 1.5925 4.3233 -1.9763 29 7 1.6286 2.2526 -0.9404 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 3.2331 1.1438 1.7500 36 1 4.4400 5.5143 1.2917 37 1 4.3343 4.9852 4.6540 38 1 5.5755 6.2128 5.0046 39 1 3.4187 7.3274 4.7506 40 1 3.1602 6.5365 3.1742 41 1 1.4699 9.3292 4.6071 42 1 4.8958 7.3474 1.2166 43 1 6.0759 8.5704 1.7498 44 1 7.7649 6.8517 0.9307 45 1 3.2456 5.0329 -0.0721 46 1 0.7810 4.8011 -1.7562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090435991.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:23 Heat of formation + Delta-G solvation = -69.151339 kcal Electronic energy + Delta-G solvation = -29685.124101 eV Core-core repulsion = 25575.671740 eV Total energy + Delta-G solvation = -4109.452361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.95464 -39.70564 -38.02576 -37.32980 -35.52039 -34.36437 -34.00169 -32.46564 -31.66716 -30.26279 -29.50483 -28.65475 -25.68064 -25.07848 -23.86066 -22.61573 -22.31568 -21.90421 -20.49624 -18.92531 -18.86205 -17.41334 -17.19273 -16.83757 -16.51265 -15.88751 -15.70165 -15.30179 -14.99118 -14.75207 -14.49705 -14.41365 -14.28328 -14.01802 -13.82255 -13.38105 -13.18880 -12.79998 -12.59553 -12.40090 -12.11096 -12.03739 -11.92984 -11.75625 -11.64702 -11.25750 -11.24737 -10.93515 -10.76102 -10.47939 -10.29554 -10.15262 -10.01617 -9.97626 -9.89067 -9.52030 -9.49713 -8.98369 -8.76399 -8.58172 -6.85674 -5.93550 -3.37947 0.59350 0.80801 2.85093 3.19555 3.29808 3.36616 3.37037 3.37661 3.69462 4.24373 4.28753 4.43285 4.56453 4.78996 4.83789 4.98354 5.05937 5.11386 5.20958 5.22729 5.29518 5.36514 5.48498 5.52136 5.60097 5.63041 5.68087 5.83693 5.86486 5.94745 5.97154 6.05918 6.14721 6.27231 6.36309 6.44343 6.55366 6.59488 6.79105 7.18569 7.30645 7.50239 7.64960 7.66717 7.71665 7.84612 8.28509 8.30879 9.04317 9.66551 10.21386 11.14668 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013580 B = 0.003190 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.368348 B = 8774.112586 C = 9414.810780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C 0.148 3.852 4 C -0.126 4.126 5 C -0.060 4.060 6 C 0.557 3.443 7 O -0.537 6.537 8 N -0.693 5.693 9 C 0.165 3.835 10 H 0.082 0.918 11 C -0.154 4.154 12 C 0.171 3.829 13 N -0.586 5.586 14 C -0.262 4.262 15 H 0.067 0.933 16 C 0.007 3.993 17 N -0.899 5.899 18 Si 0.905 3.095 19 H -0.290 1.290 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.118 3.882 23 C 0.075 3.925 24 H 0.069 0.931 25 O -0.571 6.571 26 C -0.156 4.156 27 C 0.314 3.686 28 O -0.480 6.480 29 N -0.488 5.488 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.151 0.849 36 H 0.403 0.597 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.020 0.980 41 H 0.256 0.744 42 H 0.021 0.979 43 H 0.061 0.939 44 H 0.375 0.625 45 H 0.146 0.854 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 -12.530 -7.800 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C 0.010 3.990 4 C -0.146 4.146 5 C -0.071 4.071 6 C 0.343 3.657 7 O -0.415 6.415 8 N -0.344 5.344 9 C 0.061 3.939 10 H 0.100 0.900 11 C -0.194 4.194 12 C 0.046 3.954 13 N -0.310 5.310 14 C -0.391 4.391 15 H 0.084 0.916 16 C -0.192 4.192 17 N -0.542 5.542 18 Si 0.734 3.266 19 H -0.215 1.215 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.010 4.010 23 C 0.014 3.986 24 H 0.087 0.913 25 O -0.375 6.375 26 C -0.178 4.178 27 C 0.135 3.865 28 O -0.287 6.287 29 N -0.208 5.208 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.169 0.831 36 H 0.240 0.760 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.038 0.962 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.079 0.921 44 H 0.222 0.778 45 H 0.163 0.837 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.070 -13.978 -7.913 16.062 hybrid contribution 0.192 2.381 0.820 2.526 sum 0.262 -11.597 -7.093 13.596 Atomic orbital electron populations 1.21682 0.93930 1.01817 1.02785 1.20525 0.97194 0.89755 1.03537 1.20966 0.92942 0.95853 0.89230 1.22111 0.96969 0.95587 0.99970 1.20357 0.97104 0.94424 0.95250 1.18014 0.80851 0.82417 0.84440 1.90747 1.57959 1.55642 1.37142 1.45868 1.46607 1.11001 1.30909 1.20920 0.89881 0.95250 0.87862 0.89993 1.22539 1.00472 1.00538 0.95864 1.20709 0.90773 0.85614 0.98335 1.43990 1.51794 1.04389 1.30859 1.19113 0.98164 0.87498 1.34300 0.91573 1.25046 0.94627 0.98079 1.01462 1.70011 0.99488 1.40246 1.44484 0.86342 0.76798 0.82931 0.80505 1.21547 1.20903 1.20823 1.21541 0.92970 0.95447 0.90992 1.22754 0.92857 0.94937 0.88054 0.91310 1.86483 1.63434 1.40558 1.47063 1.22356 1.00029 1.01565 0.93879 1.18910 0.93344 0.87216 0.87053 1.84785 1.46988 1.58083 1.38840 1.66754 1.25637 1.04060 1.24336 0.91577 0.92216 0.92721 0.89731 0.89800 0.83138 0.76024 0.91695 0.91217 0.89106 0.96201 0.93402 0.96179 0.92080 0.77846 0.83653 0.73872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.77 37.15 0.36 -0.83 16 2 C -0.07 -0.63 6.33 -27.89 -0.18 -0.81 16 3 C 0.15 1.77 6.17 -82.65 -0.51 1.26 16 4 C -0.13 -1.62 9.27 -39.03 -0.36 -1.98 16 5 C -0.06 -0.87 5.91 -104.68 -0.62 -1.49 16 6 C 0.56 9.34 7.76 -12.19 -0.09 9.24 16 7 O -0.54 -10.26 16.11 5.35 0.09 -10.17 16 8 N -0.69 -11.40 4.12 -54.61 -0.22 -11.62 16 9 C 0.17 2.86 2.47 -67.89 -0.17 2.69 16 10 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 11 C -0.15 -2.90 5.75 -26.83 -0.15 -3.06 16 12 C 0.17 3.82 5.03 -3.94 -0.02 3.80 16 13 N -0.59 -13.39 3.00 -172.58 -0.52 -13.90 16 14 C -0.26 -6.68 9.58 -15.06 -0.14 -6.83 16 15 H 0.07 1.65 7.89 -52.49 -0.41 1.24 16 16 C 0.01 0.19 4.91 -17.43 -0.09 0.11 16 17 N -0.90 -24.70 11.19 55.49 0.62 -24.08 16 18 Si 0.90 20.69 29.59 -169.99 -5.03 15.66 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.12 2.18 5.85 -3.71 -0.02 2.16 16 23 C 0.07 1.21 3.36 -26.61 -0.09 1.12 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 O -0.57 -8.22 13.21 -35.23 -0.47 -8.69 16 26 C -0.16 -2.08 9.55 -38.84 -0.37 -2.45 16 27 C 0.31 4.11 7.74 -17.16 -0.13 3.98 16 28 O -0.48 -5.51 13.56 -18.74 -0.25 -5.77 16 29 N -0.49 -6.45 9.87 -9.60 -0.09 -6.54 16 30 H 0.07 0.62 7.94 -51.93 -0.41 0.20 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.59 7.86 -51.93 -0.41 0.19 16 35 H 0.15 1.79 7.62 -52.48 -0.40 1.39 16 36 H 0.40 6.35 5.01 -40.82 -0.20 6.15 16 37 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.09 2.32 6.04 -51.93 -0.31 2.00 16 40 H 0.02 0.47 7.74 -51.93 -0.40 0.06 16 41 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.02 0.38 6.64 -51.93 -0.34 0.03 16 43 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 44 H 0.37 3.82 9.08 45.56 0.41 4.23 16 45 H 0.15 1.81 6.53 -52.49 -0.34 1.46 16 46 H 0.40 2.77 9.06 45.56 0.41 3.18 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -32.12 375.49 -7.70 -39.81 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -4.89 Total: 12.74 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -2.58 Total: 6.91 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.22 Total: -56.15 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.63 Total: -24.63 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.12 -7.70 -39.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090435991.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.338 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds