Wall clock time and date at job start Tue Mar 31 2020 20:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47343 * 2 1 4 4 C 1.38016 * 119.51865 * 124.99931 * 3 2 1 5 5 C 1.39925 * 119.13518 * 179.97438 * 4 3 2 6 6 C 1.48158 * 120.88885 * 179.97438 * 5 4 3 7 7 O 1.21517 * 120.00590 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99994 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00361 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46396 * 35.02695 * 9 8 6 11 11 C 1.53044 * 109.46189 * 275.06459 * 9 8 6 12 12 C 1.52755 * 109.38132 * 301.22024 * 11 9 8 13 13 N 1.46923 * 109.00900 * 305.58408 * 12 11 9 14 14 C 1.36943 * 120.62930 * 233.58508 * 13 12 11 15 15 H 1.08000 * 119.99888 * 152.17192 * 14 13 12 16 16 C 1.38811 * 119.99955 * 332.17173 * 14 13 12 17 17 N 1.31614 * 120.00254 * 342.76805 * 16 14 13 18 18 Si 1.86801 * 119.99678 * 162.77313 * 16 14 13 19 19 H 1.48501 * 109.46669 * 179.97438 * 18 16 14 20 20 H 1.48497 * 109.46948 * 299.99298 * 18 16 14 21 21 H 1.48498 * 109.47140 * 59.99949 * 18 16 14 22 22 C 1.46927 * 118.73893 * 53.31139 * 13 12 11 23 23 C 1.53046 * 109.46379 * 154.99790 * 9 8 6 24 24 H 1.08999 * 109.49861 * 178.60651 * 23 9 8 25 25 O 1.42898 * 109.49343 * 298.70602 * 23 9 8 26 26 C 1.39611 * 118.21738 * 0.24877 * 5 4 3 27 27 C 1.38854 * 118.94733 * 359.50452 * 26 5 4 28 28 O 1.35678 * 119.62146 * 180.23085 * 27 26 5 29 29 N 1.31884 * 119.50976 * 304.97722 * 3 2 1 30 30 H 1.09005 * 109.47269 * 60.00212 * 1 2 3 31 31 H 1.08997 * 109.47264 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47245 * 300.00680 * 1 2 3 33 33 H 1.09000 * 109.47448 * 239.99794 * 2 1 3 34 34 H 1.09001 * 109.47479 * 119.99327 * 2 1 3 35 35 H 1.08004 * 120.42728 * 359.95672 * 4 3 2 36 36 H 0.97006 * 119.99741 * 359.97438 * 8 6 5 37 37 H 1.09007 * 109.49256 * 61.29397 * 11 9 8 38 38 H 1.09002 * 109.49531 * 181.39096 * 11 9 8 39 39 H 1.09005 * 109.50719 * 185.70148 * 12 11 9 40 40 H 1.09006 * 109.43430 * 65.42411 * 12 11 9 41 41 H 0.96995 * 120.00322 * 180.02562 * 17 16 14 42 42 H 1.09004 * 109.58525 * 66.43417 * 22 13 12 43 43 H 1.08995 * 109.58430 * 186.71314 * 22 13 12 44 44 H 0.96702 * 113.99942 * 179.83960 * 25 23 9 45 45 H 1.08000 * 120.52493 * 179.75535 * 26 5 4 46 46 H 0.96713 * 113.99823 * 270.27822 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9085 1.8323 0.9838 5 6 3.3703 3.1531 0.9758 6 6 4.3110 3.6362 2.0135 7 8 4.6915 2.8823 2.8872 8 7 4.7441 4.9123 1.9889 9 6 5.6738 5.3903 3.0152 10 1 6.3563 4.5860 3.2899 11 6 4.8861 5.8341 4.2500 12 6 3.9081 6.9397 3.8570 13 7 4.6494 8.0207 3.1931 14 6 4.5443 9.3125 3.6351 15 1 5.3622 10.0021 3.4872 16 6 3.3865 9.7357 4.2733 17 7 2.2791 9.0333 4.1615 18 14 3.4002 11.3022 5.2908 19 1 2.0493 11.5326 5.8628 20 1 4.3881 11.1690 6.3914 21 1 3.7737 12.4506 4.4265 22 6 5.5103 7.6883 2.0499 23 6 6.4747 6.5734 2.4666 24 1 7.1491 6.9452 3.2380 25 8 7.2336 6.1505 1.3321 26 6 2.9163 4.0051 -0.0327 27 6 2.0387 3.5086 -0.9874 28 8 1.5925 4.3233 -1.9763 29 7 1.6286 2.2526 -0.9404 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 3.2331 1.1438 1.7500 36 1 4.4400 5.5143 1.2917 37 1 4.3343 4.9852 4.6540 38 1 5.5755 6.2128 5.0046 39 1 3.4187 7.3274 4.7506 40 1 3.1602 6.5365 3.1742 41 1 1.4699 9.3292 4.6071 42 1 4.8958 7.3474 1.2166 43 1 6.0759 8.5704 1.7498 44 1 7.7649 6.8517 0.9307 45 1 3.2456 5.0329 -0.0721 46 1 0.7810 4.8011 -1.7562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090435991.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:21 Heat of formation + Delta-G solvation = -95.725958 kcal Electronic energy + Delta-G solvation = -29686.276463 eV Core-core repulsion = 25575.671740 eV Total energy + Delta-G solvation = -4110.604723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04434 -40.99039 -39.39673 -38.27661 -36.96747 -35.76092 -35.05098 -33.66600 -33.18527 -31.81760 -30.50663 -30.12415 -27.35225 -26.21657 -24.90588 -23.94205 -23.63429 -23.38991 -21.64930 -20.39547 -19.92935 -18.90428 -18.40761 -18.01126 -17.85007 -17.00392 -16.80717 -16.74046 -16.60119 -16.10777 -15.83971 -15.53806 -15.43279 -15.23566 -15.02829 -14.92793 -14.42593 -14.11627 -13.88436 -13.65633 -13.43441 -13.27593 -13.03422 -12.92248 -12.78466 -12.71661 -12.38983 -12.37863 -12.23940 -12.02446 -11.93614 -11.85686 -11.48476 -11.26951 -11.05920 -11.03188 -10.56547 -10.51193 -10.15115 -9.94167 -8.72521 -7.90045 -5.35825 -0.49331 -0.16485 1.48117 1.50950 1.56601 1.67793 1.93997 2.39795 2.49119 2.65695 3.10788 3.26620 3.31897 3.45265 3.63038 3.81684 3.83434 3.86295 4.02102 4.13131 4.20238 4.25219 4.35388 4.40863 4.42301 4.50450 4.63408 4.67383 4.78780 4.83833 4.88076 4.94124 5.01202 5.07485 5.10300 5.20108 5.30055 5.36972 5.42247 5.46649 5.61818 5.68506 6.34142 6.34965 6.50679 6.77016 6.86491 6.99532 7.11247 7.79917 8.30692 9.16011 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013580 B = 0.003190 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.368348 B = 8774.112586 C = 9414.810780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C 0.150 3.850 4 C -0.129 4.129 5 C -0.075 4.075 6 C 0.557 3.443 7 O -0.564 6.564 8 N -0.690 5.690 9 C 0.167 3.833 10 H 0.081 0.919 11 C -0.141 4.141 12 C 0.184 3.816 13 N -0.601 5.601 14 C -0.265 4.265 15 H 0.072 0.928 16 C -0.045 4.045 17 N -0.930 5.930 18 Si 0.964 3.036 19 H -0.298 1.298 20 H -0.279 1.279 21 H -0.275 1.275 22 C 0.117 3.883 23 C 0.094 3.906 24 H 0.075 0.925 25 O -0.571 6.571 26 C -0.160 4.160 27 C 0.312 3.688 28 O -0.485 6.485 29 N -0.498 5.498 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.159 0.841 36 H 0.406 0.594 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.002 0.998 41 H 0.249 0.751 42 H 0.023 0.977 43 H 0.071 0.929 44 H 0.396 0.604 45 H 0.150 0.850 46 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 -13.095 -8.678 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C 0.012 3.988 4 C -0.149 4.149 5 C -0.085 4.085 6 C 0.344 3.656 7 O -0.444 6.444 8 N -0.341 5.341 9 C 0.062 3.938 10 H 0.099 0.901 11 C -0.181 4.181 12 C 0.058 3.942 13 N -0.325 5.325 14 C -0.395 4.395 15 H 0.090 0.910 16 C -0.241 4.241 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.224 1.224 20 H -0.205 1.205 21 H -0.201 1.201 22 C -0.009 4.009 23 C 0.033 3.967 24 H 0.093 0.907 25 O -0.379 6.379 26 C -0.182 4.182 27 C 0.133 3.867 28 O -0.296 6.296 29 N -0.219 5.219 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.177 0.823 36 H 0.244 0.756 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.020 0.980 41 H 0.059 0.941 42 H 0.041 0.959 43 H 0.089 0.911 44 H 0.246 0.754 45 H 0.168 0.832 46 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 0.972 -14.515 -8.830 17.018 hybrid contribution -0.074 2.531 0.998 2.722 sum 0.897 -11.984 -7.833 14.345 Atomic orbital electron populations 1.21658 0.93541 1.02915 1.01777 1.20680 0.97419 0.87824 1.05064 1.21482 0.91987 0.97043 0.88239 1.22281 0.97065 0.95135 1.00461 1.20257 0.97591 0.95420 0.95280 1.18347 0.80684 0.82128 0.84484 1.90722 1.59077 1.56260 1.38363 1.45834 1.46434 1.11127 1.30709 1.20826 0.89853 0.95644 0.87485 0.90090 1.22337 0.99823 0.99025 0.96908 1.20401 0.91128 0.86267 0.96370 1.44148 1.52274 1.03709 1.32400 1.19462 0.97976 0.88537 1.33531 0.90997 1.25737 0.94520 1.00905 1.02914 1.70158 0.99830 1.41855 1.45685 0.85397 0.76156 0.80060 0.79131 1.22425 1.20542 1.20056 1.21684 0.92786 0.96775 0.89640 1.22363 0.92360 0.93193 0.88743 0.90741 1.86457 1.63421 1.41620 1.46379 1.22373 1.00282 1.01675 0.93888 1.19004 0.93195 0.87494 0.87023 1.84737 1.48275 1.58110 1.38450 1.66869 1.25900 1.04233 1.24858 0.92828 0.90090 0.93452 0.88577 0.87848 0.82333 0.75642 0.92084 0.90782 0.92663 0.97975 0.94149 0.95880 0.91072 0.75359 0.83219 0.71668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.77 71.98 0.70 -1.39 16 2 C -0.07 -1.11 6.33 29.85 0.19 -0.92 16 3 C 0.15 3.40 6.17 42.50 0.26 3.66 16 4 C -0.13 -3.22 9.27 22.63 0.21 -3.01 16 5 C -0.07 -2.13 5.91 -19.90 -0.12 -2.25 16 6 C 0.56 18.55 7.76 86.88 0.67 19.23 16 7 O -0.56 -21.50 16.11 -3.77 -0.06 -21.56 16 8 N -0.69 -22.39 4.12 -444.97 -1.83 -24.22 16 9 C 0.17 5.61 2.47 45.02 0.11 5.72 16 10 H 0.08 2.81 7.58 -2.39 -0.02 2.79 16 11 C -0.14 -5.31 5.75 30.53 0.18 -5.13 16 12 C 0.18 8.38 5.03 86.22 0.43 8.81 16 13 N -0.60 -27.28 3.00 -699.93 -2.10 -29.38 16 14 C -0.27 -13.45 9.58 84.03 0.81 -12.64 16 15 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 16 C -0.04 -2.36 4.91 84.86 0.42 -1.94 16 17 N -0.93 -52.29 11.19 21.65 0.24 -52.05 16 18 Si 0.96 42.73 29.59 68.60 2.03 44.76 16 19 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 22 C 0.12 4.18 5.85 86.36 0.50 4.68 16 23 C 0.09 2.88 3.36 30.67 0.10 2.99 16 24 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 25 O -0.57 -14.90 13.21 -148.98 -1.97 -16.86 16 26 C -0.16 -4.20 9.55 22.75 0.22 -3.99 16 27 C 0.31 7.92 7.74 84.78 0.66 8.58 16 28 O -0.49 -10.64 13.56 -89.96 -1.22 -11.86 16 29 N -0.50 -12.64 9.87 -297.16 -2.93 -15.58 16 30 H 0.05 0.93 7.94 -2.38 -0.02 0.91 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 1.20 7.86 -2.39 -0.02 1.18 16 35 H 0.16 3.63 7.62 -2.91 -0.02 3.61 16 36 H 0.41 12.58 5.01 -92.70 -0.46 12.12 16 37 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 38 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.05 2.91 6.04 -2.38 -0.01 2.90 16 40 H 0.00 0.10 7.74 -2.38 -0.02 0.09 16 41 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 42 H 0.02 0.83 6.64 -2.38 -0.02 0.81 16 43 H 0.07 2.38 7.93 -2.39 -0.02 2.36 16 44 H 0.40 6.75 9.08 -74.06 -0.67 6.07 16 45 H 0.15 3.67 6.53 -2.91 -0.02 3.65 16 46 H 0.42 5.34 9.06 -74.05 -0.67 4.67 16 Total: -1.00 -68.57 375.49 -3.26 -71.83 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.76 Total: 32.53 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 5.34 Total: 22.39 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -6.62 Total: -121.23 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -3.25 Total: -50.28 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -68.57 -3.26 -71.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090435991.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.897 kcal (2) G-P(sol) polarization free energy of solvation -68.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds