Wall clock time and date at job start Tue Mar 31 2020 20:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47106 * 2 1 4 4 C 1.38024 * 119.51269 * 125.28395 * 3 2 1 5 5 C 1.39922 * 119.13019 * 180.25252 * 4 3 2 6 6 C 1.48167 * 120.89142 * 179.74955 * 5 4 3 7 7 O 1.21518 * 119.99907 * 359.72377 * 6 5 4 8 8 N 1.34778 * 120.00512 * 179.71816 * 6 5 4 9 9 C 1.46498 * 120.00240 * 179.72813 * 8 6 5 10 10 H 1.08996 * 109.45763 * 324.99492 * 9 8 6 11 11 C 1.53036 * 109.45889 * 84.97092 * 9 8 6 12 12 C 1.53194 * 109.31359 * 58.65597 * 11 9 8 13 13 N 1.46927 * 108.77486 * 54.63561 * 12 11 9 14 14 C 1.36934 * 120.63447 * 126.36731 * 13 12 11 15 15 H 1.07997 * 120.00289 * 332.80429 * 14 13 12 16 16 C 1.38818 * 120.00190 * 152.79324 * 14 13 12 17 17 N 1.31616 * 119.99649 * 159.76266 * 16 14 13 18 18 Si 1.86795 * 119.99699 * 339.77035 * 16 14 13 19 19 H 1.48500 * 109.47493 * 94.89816 * 18 16 14 20 20 H 1.48509 * 109.47040 * 214.89171 * 18 16 14 21 21 H 1.48496 * 109.47577 * 334.89102 * 18 16 14 22 22 C 1.46930 * 118.73678 * 306.38748 * 13 12 11 23 23 C 1.53038 * 109.45781 * 205.02575 * 9 8 6 24 24 H 1.09003 * 109.49645 * 181.39155 * 23 9 8 25 25 O 1.42905 * 109.49739 * 61.29619 * 23 9 8 26 26 C 1.39608 * 118.21972 * 359.47687 * 5 4 3 27 27 C 1.38850 * 118.94807 * 0.25158 * 26 5 4 28 28 O 1.35686 * 119.62041 * 180.02562 * 27 26 5 29 29 N 1.31884 * 119.51650 * 305.00141 * 3 2 1 30 30 H 1.09008 * 109.47071 * 59.99919 * 1 2 3 31 31 H 1.09003 * 109.47164 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47307 * 299.99714 * 1 2 3 33 33 H 1.09010 * 109.46828 * 240.00219 * 2 1 3 34 34 H 1.08997 * 109.47283 * 120.00483 * 2 1 3 35 35 H 1.08000 * 120.43058 * 0.02562 * 4 3 2 36 36 H 0.97003 * 119.99500 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.49681 * 178.60261 * 11 9 8 38 38 H 1.08995 * 109.49924 * 298.66942 * 11 9 8 39 39 H 1.09005 * 109.58280 * 174.41617 * 12 11 9 40 40 H 1.08988 * 109.58700 * 294.84650 * 12 11 9 41 41 H 0.97005 * 119.99709 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.58462 * 173.39987 * 22 13 12 43 43 H 1.08996 * 109.58616 * 293.82847 * 22 13 12 44 44 H 0.96696 * 113.99942 * 180.02562 * 25 23 9 45 45 H 1.08000 * 120.52464 * 180.22895 * 26 5 4 46 46 H 0.96698 * 114.00043 * 89.99861 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9131 1.8305 0.9805 5 6 3.3702 3.1530 0.9760 6 6 4.3119 3.6359 2.0131 7 8 4.6935 2.8814 2.8859 8 7 4.7452 4.9118 1.9884 9 6 5.6716 5.3909 3.0172 10 1 5.4393 4.9099 3.9673 11 6 7.1067 5.0492 2.6101 12 6 7.4181 5.6986 1.2581 13 7 7.1440 7.1391 1.3510 14 6 8.1021 8.0552 1.0078 15 1 9.1481 7.7995 1.0906 16 6 7.7289 9.3127 0.5533 17 7 8.5858 10.3106 0.6009 18 14 6.0108 9.5883 -0.1258 19 1 5.1292 10.1039 0.9522 20 1 6.0687 10.5765 -1.2328 21 1 5.4684 8.3038 -0.6368 22 6 5.8224 7.5779 1.8197 23 6 5.5291 6.9074 3.1652 24 1 6.2355 7.2679 3.9131 25 8 4.1971 7.2237 3.5749 26 6 2.9199 4.0037 -0.0352 27 6 2.0382 3.5087 -0.9868 28 8 1.5922 4.3235 -1.9759 29 7 1.6282 2.2528 -0.9401 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.2422 1.1405 1.7433 36 1 4.4409 5.5139 1.2914 37 1 7.7982 5.4272 3.3631 38 1 7.2138 3.9676 2.5281 39 1 8.4680 5.5417 1.0106 40 1 6.7884 5.2559 0.4864 41 1 8.3249 11.1894 0.2836 42 1 5.8194 8.6609 1.9427 43 1 5.0626 7.2883 1.0938 44 1 4.0347 8.1701 3.6883 45 1 3.2519 5.0306 -0.0765 46 1 2.1452 4.3181 -2.7692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090435992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:27 Heat of formation + Delta-G solvation = -62.987497 kcal Electronic energy + Delta-G solvation = -29842.620452 eV Core-core repulsion = 25733.435375 eV Total energy + Delta-G solvation = -4109.185077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.09875 -39.90462 -38.24308 -37.46128 -35.62443 -34.53573 -34.16573 -32.62246 -31.96720 -30.42713 -29.67113 -29.21427 -25.78555 -25.15399 -23.97349 -23.05888 -22.63047 -21.77608 -20.66132 -19.15837 -19.05266 -17.49502 -17.24402 -17.02939 -16.78956 -16.06644 -15.82390 -15.58444 -15.27038 -15.04195 -14.80245 -14.39176 -14.33279 -14.07883 -13.92531 -13.66595 -13.33593 -13.06329 -12.67146 -12.55267 -12.37608 -12.28797 -12.07611 -11.91785 -11.73527 -11.64043 -11.35067 -11.19576 -11.09370 -10.60916 -10.45279 -10.30823 -10.11344 -9.95186 -9.77624 -9.62831 -9.59905 -9.10925 -8.97151 -8.77385 -7.17588 -6.10337 -3.48495 0.45242 0.67844 2.70281 3.02881 3.14761 3.23960 3.32655 3.35937 3.53877 4.13025 4.20667 4.35391 4.42014 4.66624 4.69624 4.78133 4.87151 4.93964 5.00783 5.06543 5.16694 5.19929 5.36870 5.41144 5.45948 5.50343 5.57323 5.59120 5.66653 5.72182 5.82489 5.88150 5.97559 6.07828 6.15394 6.19876 6.23669 6.34413 6.47330 6.52401 6.70518 7.18770 7.47911 7.59542 7.69178 7.85270 8.12785 8.17208 8.75198 9.53887 9.88878 11.05177 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.003468 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.389562 B = 8071.096252 C = 8983.929640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C 0.149 3.851 4 C -0.125 4.125 5 C -0.062 4.062 6 C 0.558 3.442 7 O -0.533 6.533 8 N -0.698 5.698 9 C 0.164 3.836 10 H 0.089 0.911 11 C -0.146 4.146 12 C 0.148 3.852 13 N -0.600 5.600 14 C -0.264 4.264 15 H 0.089 0.911 16 C 0.024 3.976 17 N -0.903 5.903 18 Si 0.883 3.117 19 H -0.290 1.290 20 H -0.301 1.301 21 H -0.271 1.271 22 C 0.098 3.902 23 C 0.075 3.925 24 H 0.076 0.924 25 O -0.571 6.571 26 C -0.160 4.160 27 C 0.315 3.685 28 O -0.479 6.479 29 N -0.487 5.487 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.152 0.848 36 H 0.402 0.598 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.023 0.977 41 H 0.264 0.736 42 H 0.079 0.921 43 H 0.028 0.972 44 H 0.378 0.622 45 H 0.145 0.855 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 -15.852 -0.545 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C 0.012 3.988 4 C -0.146 4.146 5 C -0.073 4.073 6 C 0.344 3.656 7 O -0.411 6.411 8 N -0.349 5.349 9 C 0.060 3.940 10 H 0.107 0.893 11 C -0.186 4.186 12 C 0.022 3.978 13 N -0.325 5.325 14 C -0.392 4.392 15 H 0.107 0.893 16 C -0.175 4.175 17 N -0.546 5.546 18 Si 0.713 3.287 19 H -0.218 1.218 20 H -0.229 1.229 21 H -0.196 1.196 22 C -0.028 4.028 23 C 0.014 3.986 24 H 0.094 0.906 25 O -0.376 6.376 26 C -0.181 4.181 27 C 0.136 3.864 28 O -0.286 6.286 29 N -0.207 5.207 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.170 0.830 36 H 0.239 0.761 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.046 0.954 44 H 0.225 0.775 45 H 0.162 0.838 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -13.311 -16.923 -0.249 21.532 hybrid contribution -0.104 1.760 -0.577 1.856 sum -13.415 -15.163 -0.827 20.262 Atomic orbital electron populations 1.21687 0.93903 1.01860 1.02819 1.20535 0.97207 0.89670 1.03625 1.20999 0.92686 0.95774 0.89385 1.22119 0.97326 0.95497 0.99629 1.20343 0.97273 0.94482 0.95197 1.18026 0.80612 0.82478 0.84505 1.90758 1.58132 1.55281 1.36945 1.45932 1.46711 1.11217 1.31052 1.20926 0.89160 0.92611 0.91320 0.89346 1.22421 0.94620 1.00821 1.00769 1.20953 0.99798 0.83824 0.93192 1.44288 1.11339 1.01412 1.75446 1.18932 0.88595 0.92893 1.38810 0.89322 1.25310 0.97214 0.95992 0.99031 1.69826 1.35701 1.00642 1.48398 0.86964 0.85410 0.77454 0.78833 1.21777 1.22890 1.19623 1.22013 0.88529 0.99385 0.92898 1.22774 0.83714 0.94186 0.97903 0.90594 1.86442 1.30615 1.29648 1.90875 1.22352 0.97907 1.01694 0.96197 1.18914 0.90777 0.86446 0.90301 1.84802 1.54903 1.61350 1.27544 1.66763 1.24429 1.03611 1.25863 0.91535 0.92133 0.92787 0.89618 0.89749 0.83045 0.76106 0.90329 0.91117 0.91297 0.95877 0.92584 0.90344 0.95399 0.77450 0.83774 0.73897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.77 37.16 0.36 -0.75 16 2 C -0.07 -0.56 6.33 -27.89 -0.18 -0.74 16 3 C 0.15 1.62 6.17 -82.65 -0.51 1.11 16 4 C -0.12 -1.45 9.27 -39.03 -0.36 -1.81 16 5 C -0.06 -0.81 5.91 -104.68 -0.62 -1.43 16 6 C 0.56 8.46 7.76 -12.18 -0.09 8.37 16 7 O -0.53 -9.28 16.11 5.35 0.09 -9.20 16 8 N -0.70 -10.53 4.11 -54.61 -0.22 -10.76 16 9 C 0.16 2.61 2.47 -67.89 -0.17 2.45 16 10 H 0.09 1.46 7.58 -51.93 -0.39 1.06 16 11 C -0.15 -2.33 5.77 -26.61 -0.15 -2.48 16 12 C 0.15 2.69 6.26 -3.71 -0.02 2.67 16 13 N -0.60 -12.93 2.77 -172.34 -0.48 -13.41 16 14 C -0.26 -6.88 10.04 -15.06 -0.15 -7.03 16 15 H 0.09 2.49 8.05 -52.49 -0.42 2.06 16 16 C 0.02 0.65 5.24 -17.43 -0.09 0.56 16 17 N -0.90 -26.37 13.97 55.49 0.78 -25.59 16 18 Si 0.88 20.82 24.35 -169.99 -4.14 16.68 16 19 H -0.29 -6.52 6.70 56.52 0.38 -6.15 16 20 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.27 -6.16 6.45 56.52 0.36 -5.79 16 22 C 0.10 1.91 3.52 -3.72 -0.01 1.90 16 23 C 0.08 1.24 3.36 -26.63 -0.09 1.15 16 24 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 25 O -0.57 -8.64 13.21 -35.23 -0.47 -9.10 16 26 C -0.16 -1.95 9.55 -38.84 -0.37 -2.33 16 27 C 0.31 3.83 7.74 -17.17 -0.13 3.70 16 28 O -0.48 -5.16 13.56 -18.76 -0.25 -5.42 16 29 N -0.49 -5.96 9.87 -9.60 -0.09 -6.06 16 30 H 0.07 0.59 7.94 -51.92 -0.41 0.18 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16 35 H 0.15 1.60 7.62 -52.49 -0.40 1.20 16 36 H 0.40 5.91 5.01 -40.82 -0.20 5.71 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 40 H 0.02 0.41 7.74 -51.94 -0.40 0.01 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.08 1.67 4.49 -51.93 -0.23 1.44 16 43 H 0.03 0.54 5.48 -51.93 -0.28 0.25 16 44 H 0.38 4.46 9.08 45.56 0.41 4.87 16 45 H 0.14 1.66 6.53 -52.49 -0.34 1.32 16 46 H 0.40 2.40 9.06 45.56 0.41 2.81 16 LS Contribution 368.91 15.07 5.56 5.56 Total: -1.00 -32.89 368.91 -6.65 -39.54 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -4.82 Total: 12.41 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -2.59 Total: 5.34 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.02 Total: -55.81 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.63 Total: -23.72 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.14 Total: 16.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.89 -6.65 -39.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090435992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.449 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds