Wall clock time and date at job start Tue Mar 31 2020 20:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47106 * 2 1 4 4 C 1.38024 * 119.51269 * 125.28395 * 3 2 1 5 5 C 1.39922 * 119.13019 * 180.25252 * 4 3 2 6 6 C 1.48167 * 120.89142 * 179.74955 * 5 4 3 7 7 O 1.21518 * 119.99907 * 359.72377 * 6 5 4 8 8 N 1.34778 * 120.00512 * 179.71816 * 6 5 4 9 9 C 1.46498 * 120.00240 * 179.72813 * 8 6 5 10 10 H 1.08996 * 109.45763 * 324.99492 * 9 8 6 11 11 C 1.53036 * 109.45889 * 84.97092 * 9 8 6 12 12 C 1.53194 * 109.31359 * 58.65597 * 11 9 8 13 13 N 1.46927 * 108.77486 * 54.63561 * 12 11 9 14 14 C 1.36934 * 120.63447 * 126.36731 * 13 12 11 15 15 H 1.07997 * 120.00289 * 332.80429 * 14 13 12 16 16 C 1.38818 * 120.00190 * 152.79324 * 14 13 12 17 17 N 1.31616 * 119.99649 * 159.76266 * 16 14 13 18 18 Si 1.86795 * 119.99699 * 339.77035 * 16 14 13 19 19 H 1.48500 * 109.47493 * 94.89816 * 18 16 14 20 20 H 1.48509 * 109.47040 * 214.89171 * 18 16 14 21 21 H 1.48496 * 109.47577 * 334.89102 * 18 16 14 22 22 C 1.46930 * 118.73678 * 306.38748 * 13 12 11 23 23 C 1.53038 * 109.45781 * 205.02575 * 9 8 6 24 24 H 1.09003 * 109.49645 * 181.39155 * 23 9 8 25 25 O 1.42905 * 109.49739 * 61.29619 * 23 9 8 26 26 C 1.39608 * 118.21972 * 359.47687 * 5 4 3 27 27 C 1.38850 * 118.94807 * 0.25158 * 26 5 4 28 28 O 1.35686 * 119.62041 * 180.02562 * 27 26 5 29 29 N 1.31884 * 119.51650 * 305.00141 * 3 2 1 30 30 H 1.09008 * 109.47071 * 59.99919 * 1 2 3 31 31 H 1.09003 * 109.47164 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47307 * 299.99714 * 1 2 3 33 33 H 1.09010 * 109.46828 * 240.00219 * 2 1 3 34 34 H 1.08997 * 109.47283 * 120.00483 * 2 1 3 35 35 H 1.08000 * 120.43058 * 0.02562 * 4 3 2 36 36 H 0.97003 * 119.99500 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.49681 * 178.60261 * 11 9 8 38 38 H 1.08995 * 109.49924 * 298.66942 * 11 9 8 39 39 H 1.09005 * 109.58280 * 174.41617 * 12 11 9 40 40 H 1.08988 * 109.58700 * 294.84650 * 12 11 9 41 41 H 0.97005 * 119.99709 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.58462 * 173.39987 * 22 13 12 43 43 H 1.08996 * 109.58616 * 293.82847 * 22 13 12 44 44 H 0.96696 * 113.99942 * 180.02562 * 25 23 9 45 45 H 1.08000 * 120.52464 * 180.22895 * 26 5 4 46 46 H 0.96698 * 114.00043 * 89.99861 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9131 1.8305 0.9805 5 6 3.3702 3.1530 0.9760 6 6 4.3119 3.6359 2.0131 7 8 4.6935 2.8814 2.8859 8 7 4.7452 4.9118 1.9884 9 6 5.6716 5.3909 3.0172 10 1 5.4393 4.9099 3.9673 11 6 7.1067 5.0492 2.6101 12 6 7.4181 5.6986 1.2581 13 7 7.1440 7.1391 1.3510 14 6 8.1021 8.0552 1.0078 15 1 9.1481 7.7995 1.0906 16 6 7.7289 9.3127 0.5533 17 7 8.5858 10.3106 0.6009 18 14 6.0108 9.5883 -0.1258 19 1 5.1292 10.1039 0.9522 20 1 6.0687 10.5765 -1.2328 21 1 5.4684 8.3038 -0.6368 22 6 5.8224 7.5779 1.8197 23 6 5.5291 6.9074 3.1652 24 1 6.2355 7.2679 3.9131 25 8 4.1971 7.2237 3.5749 26 6 2.9199 4.0037 -0.0352 27 6 2.0382 3.5087 -0.9868 28 8 1.5922 4.3235 -1.9759 29 7 1.6282 2.2528 -0.9401 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.2422 1.1405 1.7433 36 1 4.4409 5.5139 1.2914 37 1 7.7982 5.4272 3.3631 38 1 7.2138 3.9676 2.5281 39 1 8.4680 5.5417 1.0106 40 1 6.7884 5.2559 0.4864 41 1 8.3249 11.1894 0.2836 42 1 5.8194 8.6609 1.9427 43 1 5.0626 7.2883 1.0938 44 1 4.0347 8.1701 3.6883 45 1 3.2519 5.0306 -0.0765 46 1 2.1452 4.3181 -2.7692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090435992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:26 Heat of formation + Delta-G solvation = -91.696361 kcal Electronic energy + Delta-G solvation = -29843.865361 eV Core-core repulsion = 25733.435375 eV Total energy + Delta-G solvation = -4110.429987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.07723 -41.07989 -39.53671 -38.30111 -37.02992 -35.87827 -35.09497 -33.92438 -33.30994 -31.91256 -30.78034 -30.35980 -27.35671 -26.21901 -24.96313 -24.46754 -23.53448 -23.31414 -21.70950 -20.54668 -19.97289 -18.97219 -18.42574 -18.33793 -17.92318 -17.34173 -16.80715 -16.69850 -16.65436 -16.14284 -16.05919 -15.71148 -15.39054 -15.20539 -15.10045 -14.96335 -14.70116 -14.31297 -14.05361 -13.95590 -13.51069 -13.30118 -13.25939 -13.00787 -12.83396 -12.74957 -12.64458 -12.36942 -12.26322 -12.03127 -11.94914 -11.69183 -11.52650 -11.37706 -11.14171 -11.06352 -10.67601 -10.57022 -10.21381 -9.95040 -8.99812 -8.18015 -5.52606 -0.50576 -0.17656 1.27498 1.41796 1.49372 1.66103 1.88969 2.38600 2.39769 2.62342 2.86868 3.11543 3.29896 3.31645 3.43172 3.75410 3.79805 3.82650 3.89887 4.04080 4.14472 4.18413 4.22023 4.30870 4.38435 4.42941 4.50019 4.64728 4.66261 4.77314 4.80683 4.84151 4.87797 4.93287 5.02098 5.06648 5.18666 5.19070 5.29667 5.38200 5.45844 5.81924 6.10909 6.30262 6.50037 6.69043 6.76880 6.86963 6.95904 7.56104 7.94670 9.01269 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.003468 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.389562 B = 8071.096252 C = 8983.929640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 C 0.151 3.849 4 C -0.126 4.126 5 C -0.074 4.074 6 C 0.561 3.439 7 O -0.558 6.558 8 N -0.696 5.696 9 C 0.167 3.833 10 H 0.088 0.912 11 C -0.135 4.135 12 C 0.147 3.853 13 N -0.610 5.610 14 C -0.250 4.250 15 H 0.055 0.945 16 C -0.034 4.034 17 N -0.955 5.955 18 Si 0.944 3.056 19 H -0.271 1.271 20 H -0.315 1.315 21 H -0.254 1.254 22 C 0.096 3.904 23 C 0.090 3.910 24 H 0.074 0.926 25 O -0.571 6.571 26 C -0.162 4.162 27 C 0.311 3.689 28 O -0.487 6.487 29 N -0.499 5.499 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.161 0.839 36 H 0.405 0.595 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.035 0.965 41 H 0.262 0.738 42 H 0.061 0.939 43 H 0.040 0.960 44 H 0.394 0.606 45 H 0.150 0.850 46 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.844 -17.664 -0.590 23.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C 0.013 3.987 4 C -0.147 4.147 5 C -0.084 4.084 6 C 0.348 3.652 7 O -0.438 6.438 8 N -0.347 5.347 9 C 0.063 3.937 10 H 0.106 0.894 11 C -0.174 4.174 12 C 0.023 3.977 13 N -0.336 5.336 14 C -0.380 4.380 15 H 0.073 0.927 16 C -0.229 4.229 17 N -0.600 5.600 18 Si 0.773 3.227 19 H -0.198 1.198 20 H -0.245 1.245 21 H -0.178 1.178 22 C -0.029 4.029 23 C 0.029 3.971 24 H 0.092 0.908 25 O -0.378 6.378 26 C -0.184 4.184 27 C 0.132 3.868 28 O -0.298 6.298 29 N -0.220 5.220 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.178 0.822 36 H 0.242 0.758 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.244 0.756 45 H 0.168 0.832 46 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -15.591 -18.760 -0.298 24.395 hybrid contribution 0.614 2.248 -0.557 2.396 sum -14.977 -16.512 -0.855 22.309 Atomic orbital electron populations 1.21663 0.93787 1.02866 1.01667 1.20682 0.97192 0.87955 1.05186 1.21482 0.91897 0.96867 0.88478 1.22285 0.97282 0.95130 1.00007 1.20236 0.97665 0.95338 0.95209 1.18270 0.80385 0.82074 0.84460 1.90743 1.59141 1.55828 1.38067 1.45881 1.46537 1.11408 1.30862 1.20834 0.89146 0.92138 0.91630 0.89418 1.22283 0.94834 1.01106 0.99215 1.21048 0.99716 0.82078 0.94895 1.44328 1.11354 1.02073 1.75816 1.18835 0.88331 0.93500 1.37289 0.92726 1.25932 1.01202 0.95815 0.99960 1.69966 1.38227 1.01156 1.50681 0.85963 0.81221 0.77602 0.77944 1.19788 1.24462 1.17815 1.22055 0.87463 0.98674 0.94742 1.22461 0.84453 0.94203 0.96020 0.90831 1.86431 1.29438 1.31366 1.90519 1.22368 0.98117 1.01869 0.96066 1.19023 0.90584 0.86592 0.90606 1.84755 1.55603 1.61116 1.28280 1.66861 1.24783 1.03874 1.26459 0.93068 0.90085 0.93507 0.88474 0.87730 0.82150 0.75761 0.90326 0.90076 0.92024 0.94703 0.92908 0.92043 0.94220 0.75595 0.83214 0.71645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.77 71.98 0.70 -1.16 16 2 C -0.07 -0.94 6.33 29.85 0.19 -0.75 16 3 C 0.15 2.96 6.17 42.50 0.26 3.22 16 4 C -0.13 -2.69 9.27 22.63 0.21 -2.48 16 5 C -0.07 -1.79 5.91 -19.90 -0.12 -1.91 16 6 C 0.56 15.94 7.76 86.88 0.67 16.61 16 7 O -0.56 -18.46 16.11 -3.77 -0.06 -18.52 16 8 N -0.70 -19.44 4.11 -444.98 -1.83 -21.27 16 9 C 0.17 4.97 2.47 45.02 0.11 5.08 16 10 H 0.09 2.70 7.58 -2.39 -0.02 2.69 16 11 C -0.13 -4.05 5.77 30.67 0.18 -3.88 16 12 C 0.15 5.18 6.26 86.36 0.54 5.72 16 13 N -0.61 -25.74 2.77 -699.15 -1.94 -27.68 16 14 C -0.25 -13.18 10.04 84.04 0.84 -12.34 16 15 H 0.05 3.19 8.05 -2.91 -0.02 3.17 16 16 C -0.03 -1.87 5.24 84.86 0.44 -1.42 16 17 N -0.95 -57.29 13.97 21.65 0.30 -56.98 16 18 Si 0.94 42.69 24.35 68.60 1.67 44.36 16 19 H -0.27 -11.34 6.70 99.48 0.67 -10.67 16 20 H -0.32 -14.95 7.11 99.48 0.71 -14.25 16 21 H -0.25 -10.63 6.45 99.48 0.64 -9.99 16 22 C 0.10 3.55 3.52 86.35 0.30 3.85 16 23 C 0.09 2.77 3.36 30.66 0.10 2.87 16 24 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 25 O -0.57 -15.66 13.21 -148.98 -1.97 -17.63 16 26 C -0.16 -3.66 9.55 22.75 0.22 -3.45 16 27 C 0.31 7.00 7.74 84.78 0.66 7.65 16 28 O -0.49 -9.55 13.56 -90.05 -1.22 -10.77 16 29 N -0.50 -11.32 9.87 -297.17 -2.93 -14.26 16 30 H 0.05 0.83 7.94 -2.38 -0.02 0.81 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.10 0.94 7.86 -2.39 -0.02 0.92 16 35 H 0.16 3.05 7.62 -2.91 -0.02 3.03 16 36 H 0.40 10.86 5.01 -92.71 -0.46 10.40 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.06 2.24 7.93 -2.38 -0.02 2.22 16 40 H 0.03 1.17 7.74 -2.39 -0.02 1.15 16 41 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 42 H 0.06 2.49 4.49 -2.39 -0.01 2.48 16 43 H 0.04 1.39 5.48 -2.39 -0.01 1.38 16 44 H 0.39 8.12 9.08 -74.06 -0.67 7.45 16 45 H 0.15 3.11 6.53 -2.91 -0.02 3.09 16 46 H 0.42 4.17 9.06 -74.06 -0.67 3.50 16 Total: -1.00 -70.64 368.91 -3.52 -74.16 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: -0.86 Total: 30.95 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 5.32 Total: 17.64 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -6.40 Total: -120.19 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -3.25 Total: -46.92 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.67 Total: 44.36 kcal Total: -70.64 -3.52 -74.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090435992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.537 kcal (2) G-P(sol) polarization free energy of solvation -70.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds