Wall clock time and date at job start Tue Mar 31 2020 20:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.46929 * 2 1 4 4 C 1.38359 * 120.27277 * 89.99893 * 3 2 1 5 5 N 1.31881 * 121.18726 * 180.02562 * 4 3 2 6 6 C 1.32239 * 121.79752 * 359.97438 * 5 4 3 7 7 O 1.35430 * 119.79565 * 180.02562 * 6 5 4 8 8 C 1.40277 * 120.40291 * 0.02562 * 6 5 4 9 9 C 1.47522 * 120.59560 * 179.97438 * 8 6 5 10 10 O 1.21596 * 120.00253 * 0.02562 * 9 8 6 11 11 N 1.34775 * 119.99880 * 179.97438 * 9 8 6 12 12 C 1.46508 * 120.00124 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.45584 * 35.02780 * 12 11 9 14 14 C 1.53038 * 109.44654 * 275.06202 * 12 11 9 15 15 C 1.53631 * 109.24213 * 178.49587 * 14 12 11 16 16 N 1.46923 * 108.54036 * 54.85570 * 15 14 12 17 17 C 1.36940 * 120.62812 * 126.37121 * 16 15 14 18 18 H 1.07992 * 119.99796 * 332.04606 * 17 16 15 19 19 C 1.38808 * 119.99786 * 152.04325 * 17 16 15 20 20 N 1.31614 * 120.00335 * 342.64662 * 19 17 16 21 21 Si 1.86804 * 119.99838 * 162.64095 * 19 17 16 22 22 H 1.48506 * 109.47210 * 270.00074 * 21 19 17 23 23 H 1.48502 * 109.46891 * 30.00315 * 21 19 17 24 24 H 1.48502 * 109.47171 * 150.00370 * 21 19 17 25 25 C 1.46928 * 118.74171 * 306.09682 * 16 15 14 26 26 C 1.53041 * 109.46001 * 155.00322 * 12 11 9 27 27 H 1.08999 * 109.49799 * 61.42211 * 26 12 11 28 28 O 1.42895 * 109.49512 * 301.32239 * 26 12 11 29 29 C 1.38339 * 120.27240 * 270.25896 * 3 2 1 30 30 H 1.08999 * 109.47025 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47465 * 299.99810 * 1 2 3 32 32 H 1.08999 * 109.47390 * 60.00229 * 1 2 3 33 33 H 1.08998 * 109.47157 * 239.99759 * 2 1 3 34 34 H 1.09003 * 109.46955 * 119.99967 * 2 1 3 35 35 H 1.08000 * 119.40248 * 359.97438 * 4 3 2 36 36 H 0.96697 * 114.00334 * 270.02411 * 7 6 5 37 37 H 0.97001 * 120.00553 * 0.02562 * 11 9 8 38 38 H 1.08994 * 109.50474 * 298.57334 * 14 12 11 39 39 H 1.09007 * 109.49914 * 58.63728 * 14 12 11 40 40 H 1.09000 * 109.73449 * 295.11703 * 15 14 12 41 41 H 1.08998 * 109.66186 * 174.55352 * 15 14 12 42 42 H 0.97001 * 120.00091 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.58917 * 173.65023 * 25 16 15 44 44 H 1.09003 * 109.58668 * 293.93191 * 25 16 15 45 45 H 0.96702 * 114.00352 * 180.16637 * 28 26 12 46 46 H 1.07997 * 120.82634 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2647 2.0784 1.1949 5 7 2.7038 3.3218 1.2160 6 6 2.9420 3.9956 0.1033 7 8 3.3928 5.2708 0.1722 8 6 2.7305 3.3975 -1.1478 9 6 2.9943 4.1454 -2.3918 10 8 3.3992 5.2908 -2.3384 11 7 2.7875 3.5589 -3.5874 12 6 3.0500 4.3014 -4.8228 13 1 3.9075 4.9582 -4.6764 14 6 1.8216 5.1394 -5.1844 15 6 2.1154 5.9447 -6.4593 16 7 2.5412 5.0131 -7.5126 17 6 1.9137 5.0022 -8.7297 18 1 0.8798 5.3042 -8.8069 19 6 2.6068 4.6030 -9.8642 20 7 3.9223 4.5643 -9.8522 21 14 1.6722 4.1205 -11.4081 22 1 1.3816 2.6645 -11.3761 23 1 0.3969 4.8787 -11.4719 24 1 2.4953 4.4348 -12.6035 25 6 3.6569 4.0975 -7.2373 26 6 3.3493 3.3168 -5.9556 27 1 2.4829 2.6760 -6.1191 28 8 4.4778 2.5139 -5.6039 29 6 2.2596 2.0801 -1.1947 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0826 1.5644 2.1271 36 1 2.6908 5.9356 0.1926 37 1 2.4649 2.6451 -3.6301 38 1 0.9696 4.4815 -5.3550 39 1 1.5946 5.8239 -4.3669 40 1 2.9105 6.6646 -6.2649 41 1 1.2145 6.4693 -6.7776 42 1 4.4065 4.2850 -10.6449 43 1 3.7734 3.4029 -8.0692 44 1 4.5756 4.6697 -7.1076 45 1 4.7263 1.8674 -6.2787 46 1 2.0820 1.5893 -2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090681011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:01 Heat of formation + Delta-G solvation = -99.718273 kcal Electronic energy + Delta-G solvation = -29402.695968 eV Core-core repulsion = 25291.918126 eV Total energy + Delta-G solvation = -4110.777843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.01812 -40.68781 -39.27463 -38.35291 -36.90247 -35.84362 -35.19794 -34.25301 -33.22061 -31.10191 -30.49504 -30.02471 -27.21787 -25.75551 -24.99133 -24.20999 -23.63035 -22.65520 -21.52855 -21.05447 -19.93295 -19.04530 -18.36372 -18.24154 -18.10167 -17.17281 -17.07655 -16.59133 -16.01496 -15.88717 -15.59172 -15.41257 -15.30999 -14.99465 -14.87239 -14.61598 -14.41757 -14.21580 -13.85925 -13.71007 -13.54735 -13.35877 -13.10373 -13.06131 -12.80846 -12.66732 -12.54204 -12.32430 -12.11846 -12.01061 -11.89355 -11.81308 -11.43564 -11.18215 -11.00384 -10.96105 -10.60878 -10.45775 -10.13311 -9.78583 -8.77758 -7.91107 -5.38762 -0.50035 0.01275 1.48971 1.50324 1.59498 1.77042 1.98133 2.48017 2.49489 2.73642 3.09235 3.25500 3.44182 3.60651 3.65069 3.69506 3.82782 3.89926 4.04145 4.14739 4.28080 4.29822 4.39395 4.43734 4.51708 4.55016 4.65634 4.70690 4.83629 4.87159 4.92455 4.94381 5.03036 5.14544 5.19436 5.31441 5.34752 5.38224 5.41132 5.51409 5.55733 5.63681 6.32499 6.43309 6.54211 6.78942 6.81360 7.09298 7.15148 7.76677 8.29824 9.15430 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.002769 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.497103 B =10110.246093 C =10884.147637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 C -0.141 4.141 4 C 0.149 3.851 5 N -0.526 5.526 6 C 0.343 3.657 7 O -0.481 6.481 8 C -0.212 4.212 9 C 0.558 3.442 10 O -0.562 6.562 11 N -0.697 5.697 12 C 0.171 3.829 13 H 0.054 0.946 14 C -0.122 4.122 15 C 0.141 3.859 16 N -0.604 5.604 17 C -0.266 4.266 18 H 0.074 0.926 19 C -0.048 4.048 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.280 1.280 23 H -0.269 1.269 24 H -0.299 1.299 25 C 0.157 3.843 26 C 0.093 3.907 27 H 0.070 0.930 28 O -0.574 6.574 29 C -0.023 4.023 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.198 0.802 36 H 0.415 0.585 37 H 0.410 0.590 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.008 0.992 41 H 0.068 0.932 42 H 0.252 0.748 43 H 0.072 0.928 44 H -0.007 1.007 45 H 0.393 0.607 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.498 -13.036 20.513 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.143 4.143 4 C -0.009 4.009 5 N -0.245 5.245 6 C 0.164 3.836 7 O -0.291 6.291 8 C -0.219 4.219 9 C 0.345 3.655 10 O -0.442 6.442 11 N -0.348 5.348 12 C 0.066 3.934 13 H 0.073 0.927 14 C -0.162 4.162 15 C 0.015 3.985 16 N -0.329 5.329 17 C -0.396 4.396 18 H 0.091 0.909 19 C -0.244 4.244 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.206 1.206 23 H -0.194 1.194 24 H -0.226 1.226 25 C 0.030 3.970 26 C 0.032 3.968 27 H 0.088 0.912 28 O -0.381 6.381 29 C -0.049 4.049 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.214 0.786 36 H 0.277 0.723 37 H 0.247 0.753 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.026 0.974 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.011 0.989 45 H 0.242 0.758 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.428 -11.649 21.703 25.727 hybrid contribution -0.373 -0.355 -2.476 2.529 sum -7.802 -12.004 19.227 23.972 Atomic orbital electron populations 1.21792 0.93961 1.02862 1.02090 1.20569 0.96485 0.89074 1.05187 1.21180 1.00939 0.99584 0.92587 1.23311 0.89998 0.87828 0.99716 1.67379 1.14777 1.11317 1.30989 1.19351 0.90116 0.87146 0.86991 1.84674 1.36390 1.12588 1.95430 1.21020 1.09500 0.98009 0.93334 1.18211 0.77369 0.86130 0.83765 1.90795 1.46698 1.19129 1.87562 1.45731 1.67052 1.17672 1.04363 1.20695 0.97688 0.92746 0.82295 0.92742 1.22276 0.97050 0.98976 0.97860 1.21130 0.97839 0.91360 0.88149 1.44281 1.38252 1.38784 1.11558 1.19565 0.93959 1.41301 0.84735 0.90851 1.25847 0.95916 1.02186 1.00411 1.70191 1.06671 1.51612 1.29593 0.85223 0.77942 0.78380 0.78608 1.20626 1.19358 1.22577 1.21225 0.88602 0.92665 0.94557 1.22552 0.88598 0.91840 0.93786 0.91177 1.86403 1.50177 1.53564 1.47977 1.21926 0.91410 0.90853 1.00724 0.90803 0.92393 0.93159 0.89464 0.88363 0.78569 0.72348 0.75281 0.90385 0.91087 0.97426 0.91347 0.93925 0.90956 0.98888 0.75791 0.81901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 71.98 0.71 -0.22 16 2 C -0.08 -0.47 6.08 29.85 0.18 -0.29 16 3 C -0.14 -1.80 5.14 -19.81 -0.10 -1.90 16 4 C 0.15 2.21 10.84 84.71 0.92 3.13 16 5 N -0.53 -12.08 10.37 -307.99 -3.19 -15.28 16 6 C 0.34 9.14 7.77 85.13 0.66 9.81 16 7 O -0.48 -13.88 11.66 -66.44 -0.77 -14.65 16 8 C -0.21 -5.29 5.90 -19.91 -0.12 -5.41 16 9 C 0.56 17.46 7.73 86.69 0.67 18.13 16 10 O -0.56 -22.09 14.86 16.80 0.25 -21.84 16 11 N -0.70 -19.77 4.87 -445.57 -2.17 -21.94 16 12 C 0.17 6.02 2.12 45.02 0.10 6.11 16 13 H 0.05 2.34 7.58 -2.39 -0.02 2.32 16 14 C -0.12 -4.18 5.67 30.82 0.17 -4.00 16 15 C 0.14 5.91 6.54 86.51 0.57 6.47 16 16 N -0.60 -29.41 2.99 -698.25 -2.09 -31.50 16 17 C -0.27 -13.98 9.58 84.03 0.81 -13.17 16 18 H 0.07 3.73 7.89 -2.91 -0.02 3.70 16 19 C -0.05 -2.57 4.91 84.86 0.42 -2.15 16 20 N -0.94 -53.54 11.19 21.65 0.24 -53.29 16 21 Si 0.97 42.80 29.59 68.60 2.03 44.83 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.30 -13.49 7.11 99.48 0.71 -12.79 16 25 C 0.16 7.28 4.93 86.36 0.43 7.71 16 26 C 0.09 3.32 3.14 30.67 0.10 3.42 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 28 O -0.57 -18.57 13.16 -148.98 -1.96 -20.53 16 29 C -0.02 -0.39 9.31 22.72 0.21 -0.18 16 30 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.09 0.46 8.09 -2.39 -0.02 0.44 16 34 H 0.10 0.30 8.09 -2.39 -0.02 0.28 16 35 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.42 8.63 9.06 -74.06 -0.67 7.96 16 37 H 0.41 8.89 6.70 -92.71 -0.62 8.27 16 38 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.07 2.72 7.93 -2.39 -0.02 2.70 16 42 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 43 H 0.07 3.67 6.04 -2.39 -0.01 3.66 16 44 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 45 H 0.39 9.89 9.08 -74.06 -0.67 9.22 16 46 H 0.16 1.91 6.51 -2.91 -0.02 1.89 16 Total: -1.00 -75.48 378.06 -2.88 -78.35 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.93 Total: 28.40 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: 5.72 Total: 27.45 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -7.21 Total: -122.01 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -2.49 Total: -57.02 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -75.48 -2.88 -78.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090681011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.365 kcal (2) G-P(sol) polarization free energy of solvation -75.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds